HEADER TRANSCRIPTION 23-JUL-04 1U42 TITLE CRYSTAL STRUCTURE OF MLAM MUTANT OF DIMERISATION DOMAIN OF NF-KB P50 TITLE 2 TRANSCRIPTION FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DIMERIZATION DOMAIN; COMPND 5 SYNONYM: NF-KB P50 TRANSCRIPTION FACTOR; DNA-BINDING FACTOR KBF1; COMPND 6 EBP- 1; NF-KAPPA-B1 P84/NF-KAPPA-B1 P98 [CONTAINS: NUCLEAR FACTOR NF- COMPND 7 KAPPA-B P50 SUBUNIT]; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NFKB1, 18033; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS TRANSCRIPTION FACTOR; NF-KB; DIMERIZATION DOMAIN; INTERTWINED KEYWDS 2 FOLDING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.Y.CHIRGADZE,M.DEMYDCHUK,M.BECKER,S.MORAN,M.PAOLI REVDAT 6 23-AUG-23 1U42 1 REMARK REVDAT 5 20-OCT-21 1U42 1 SEQADV REVDAT 4 01-FEB-17 1U42 1 TITLE REVDAT 3 13-JUL-11 1U42 1 VERSN REVDAT 2 24-FEB-09 1U42 1 VERSN REVDAT 1 17-AUG-04 1U42 0 JRNL AUTH D.Y.CHIRGADZE,M.DEMYDCHUK,M.BECKER,S.MORAN,M.PAOLI JRNL TITL SNAPSHOT OF PROTEIN STRUCTURE EVOLUTION REVEALS CONSERVATION JRNL TITL 2 OF FUNCTIONAL DIMERIZATION THROUGH INTERTWINED FOLDING JRNL REF STRUCTURE V. 12 1489 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15296742 JRNL DOI 10.1016/J.STR.2004.06.011 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 2913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.200 REMARK 3 FREE R VALUE TEST SET COUNT : 295 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 198 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.4780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 801 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 75.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 0.86000 REMARK 3 B33 (A**2) : -1.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.468 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.477 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.110 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 820 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 739 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1107 ; 1.590 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1724 ; 3.511 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 99 ; 1.334 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 121 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 905 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 171 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 152 ; 0.272 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 708 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 426 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 15 ; 0.220 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.234 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 191 ; 0.381 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 505 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 815 ; 0.000 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 315 ; 0.000 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 292 ; 0.000 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 246 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5849 44.2761 23.3469 REMARK 3 T TENSOR REMARK 3 T11: 0.3046 T22: 0.3953 REMARK 3 T33: 0.2570 T12: -0.0488 REMARK 3 T13: 0.0339 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: -1.5216 L22: 6.1635 REMARK 3 L33: 3.6067 L12: 0.2808 REMARK 3 L13: -1.8650 L23: -0.6602 REMARK 3 S TENSOR REMARK 3 S11: 0.2391 S12: 0.6228 S13: -0.2237 REMARK 3 S21: -0.3941 S22: -0.3262 S23: 0.1137 REMARK 3 S31: 0.1187 S32: 0.1024 S33: 0.0871 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 273 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3241 47.7815 31.3526 REMARK 3 T TENSOR REMARK 3 T11: 0.0496 T22: 0.4884 REMARK 3 T33: 0.1878 T12: -0.0867 REMARK 3 T13: 0.0840 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 7.4541 L22: 15.6879 REMARK 3 L33: 8.2348 L12: -6.1037 REMARK 3 L13: 2.8974 L23: 0.0866 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: -0.3801 S13: -0.0737 REMARK 3 S21: 0.4796 S22: 0.0301 S23: 0.0114 REMARK 3 S31: -0.1561 S32: 0.4440 S33: -0.0098 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 290 A 305 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6685 50.1214 30.4306 REMARK 3 T TENSOR REMARK 3 T11: 0.1721 T22: 0.4492 REMARK 3 T33: 0.3426 T12: -0.0214 REMARK 3 T13: 0.0242 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 3.9776 L22: 4.5881 REMARK 3 L33: 12.5097 L12: -1.7367 REMARK 3 L13: 1.8171 L23: -3.4564 REMARK 3 S TENSOR REMARK 3 S11: -0.2274 S12: -0.5611 S13: 0.2585 REMARK 3 S21: 0.4010 S22: 0.2372 S23: 0.0238 REMARK 3 S31: -0.9469 S32: -0.0926 S33: -0.0098 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 306 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2255 54.8919 11.4699 REMARK 3 T TENSOR REMARK 3 T11: 0.4003 T22: 0.2972 REMARK 3 T33: 0.4878 T12: 0.1202 REMARK 3 T13: 0.0019 T23: 0.1062 REMARK 3 L TENSOR REMARK 3 L11: 60.0035 L22: -2.4018 REMARK 3 L33: 36.4383 L12: -0.4655 REMARK 3 L13: -8.9005 L23: 20.2420 REMARK 3 S TENSOR REMARK 3 S11: 1.7549 S12: -2.3013 S13: 1.3300 REMARK 3 S21: -0.2843 S22: -1.6328 S23: -0.6190 REMARK 3 S31: 1.2260 S32: -2.1588 S33: -0.1220 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 309 A 314 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2030 44.7687 2.8507 REMARK 3 T TENSOR REMARK 3 T11: 0.4422 T22: 0.3002 REMARK 3 T33: 0.3051 T12: -0.1899 REMARK 3 T13: -0.1241 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 6.4373 L22: 23.2657 REMARK 3 L33: -0.9505 L12: 2.7721 REMARK 3 L13: -5.2698 L23: -10.9416 REMARK 3 S TENSOR REMARK 3 S11: -0.9365 S12: -0.9662 S13: -2.1016 REMARK 3 S21: -0.1441 S22: 0.4395 S23: 1.8490 REMARK 3 S31: 0.5271 S32: 0.7256 S33: 0.4970 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 315 A 324 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3382 40.1352 -6.5294 REMARK 3 T TENSOR REMARK 3 T11: 0.6782 T22: 0.3868 REMARK 3 T33: 0.5898 T12: 0.0459 REMARK 3 T13: 0.0419 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.9843 L22: 1.1736 REMARK 3 L33: 6.5219 L12: -12.4814 REMARK 3 L13: -8.7186 L23: 4.5959 REMARK 3 S TENSOR REMARK 3 S11: 0.4872 S12: 0.6982 S13: -0.7060 REMARK 3 S21: 0.6193 S22: 0.2803 S23: -0.0140 REMARK 3 S31: -0.4345 S32: 0.1345 S33: -0.7675 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 325 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2817 51.4581 -0.5748 REMARK 3 T TENSOR REMARK 3 T11: 0.3545 T22: 0.3995 REMARK 3 T33: 0.3331 T12: -0.1202 REMARK 3 T13: 0.0993 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 9.6440 L22: 31.6331 REMARK 3 L33: 1.1623 L12: -22.8481 REMARK 3 L13: 5.3776 L23: 6.2787 REMARK 3 S TENSOR REMARK 3 S11: 1.4392 S12: 0.0333 S13: 0.8859 REMARK 3 S21: -1.7446 S22: -0.5953 S23: -1.5287 REMARK 3 S31: -0.1842 S32: 0.6175 S33: -0.8439 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 331 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0331 60.1691 -2.4686 REMARK 3 T TENSOR REMARK 3 T11: 0.4012 T22: 0.1804 REMARK 3 T33: 0.3002 T12: -0.1220 REMARK 3 T13: -0.0349 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 14.3641 L22: 1.1094 REMARK 3 L33: 13.3968 L12: -6.5387 REMARK 3 L13: 10.2387 L23: 1.0434 REMARK 3 S TENSOR REMARK 3 S11: 0.4576 S12: 0.0604 S13: 0.9999 REMARK 3 S21: 0.0424 S22: -0.6451 S23: -0.7491 REMARK 3 S31: 1.2046 S32: -0.2878 S33: 0.1875 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 342 A 350 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3538 45.2895 1.8575 REMARK 3 T TENSOR REMARK 3 T11: 0.2878 T22: 0.4206 REMARK 3 T33: 0.2620 T12: -0.0130 REMARK 3 T13: -0.0566 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 9.0296 L22: 24.3647 REMARK 3 L33: 4.8481 L12: -5.7878 REMARK 3 L13: 0.5619 L23: -1.4346 REMARK 3 S TENSOR REMARK 3 S11: 0.1649 S12: -0.4282 S13: 0.2231 REMARK 3 S21: -0.3833 S22: -0.2131 S23: -1.2807 REMARK 3 S31: 0.0295 S32: 0.3126 S33: 0.0482 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1U42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.864 REMARK 200 MONOCHROMATOR : DARESBURY REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3233 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.699 REMARK 200 RESOLUTION RANGE LOW (A) : 42.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1BFS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, AMMONIUM SULPHATE, REMARK 280 CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.92800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.70150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.70150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.96400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.70150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.70150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.89200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.70150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.70150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 14.96400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.70150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.70150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.89200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 29.92800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 59.40300 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 59.40300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 29.92800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 245 REMARK 465 GLU A 286 REMARK 465 GLU A 287 REMARK 465 ASN A 288 REMARK 465 GLY A 289 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 MET A 267 CG SD CE REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 305 NH1 ARG A 305 8665 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 300 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 247 -25.18 79.14 REMARK 500 VAL A 260 -15.77 -48.25 REMARK 500 ASP A 271 -161.62 -75.49 REMARK 500 ASN A 320 37.58 -92.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U36 RELATED DB: PDB REMARK 900 RELATED ID: 1U3J RELATED DB: PDB REMARK 900 RELATED ID: 1U3Y RELATED DB: PDB REMARK 900 RELATED ID: 1U3Z RELATED DB: PDB REMARK 900 RELATED ID: 1U41 RELATED DB: PDB DBREF 1U42 A 245 350 UNP P25799 NFKB1_MOUSE 245 350 SEQADV 1U42 MET A 267 UNP P25799 TYR 267 ENGINEERED MUTATION SEQADV 1U42 MET A 310 UNP P25799 VAL 310 ENGINEERED MUTATION SEQRES 1 A 106 ALA SER ASN LEU LYS ILE VAL ARG MET ASP ARG THR ALA SEQRES 2 A 106 GLY CYS VAL THR GLY GLY GLU GLU ILE MET LEU LEU CYS SEQRES 3 A 106 ASP LYS VAL GLN LYS ASP ASP ILE GLN ILE ARG PHE TYR SEQRES 4 A 106 GLU GLU GLU GLU ASN GLY GLY VAL TRP GLU GLY PHE GLY SEQRES 5 A 106 ASP PHE SER PRO THR ASP VAL HIS ARG GLN PHE ALA ILE SEQRES 6 A 106 MET PHE LYS THR PRO LYS TYR LYS ASP VAL ASN ILE THR SEQRES 7 A 106 LYS PRO ALA SER VAL PHE VAL GLN LEU ARG ARG LYS SER SEQRES 8 A 106 ASP LEU GLU THR SER GLU PRO LYS PRO PHE LEU TYR TYR SEQRES 9 A 106 PRO GLU FORMUL 2 HOH *13(H2 O) SHEET 1 A 2 ARG A 252 MET A 253 0 SHEET 2 A 2 LEU A 268 LEU A 269 -1 O LEU A 269 N ARG A 252 SHEET 1 B 2 ARG A 281 GLU A 284 0 SHEET 2 B 2 TRP A 292 PHE A 295 -1 O GLY A 294 N PHE A 282 SHEET 1 C 2 ALA A 325 VAL A 329 0 SHEET 2 C 2 LYS A 343 TYR A 347 -1 O PHE A 345 N VAL A 327 CRYST1 59.403 59.403 59.856 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016834 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016707 0.00000