HEADER TRANSFERASE 23-JUL-04 1U4D TITLE STRUCTURE OF THE ACK1 KINASE DOMAIN BOUND TO DEBROMOHYMENIALDISINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIVATED CDC42 KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: ACK-1; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACK1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF-9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PACGP67 KEYWDS TYROSINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.C.LOUGHEED,R.H.CHEN,P.MAK,T.J.STOUT REVDAT 4 23-AUG-23 1U4D 1 REMARK SEQADV REVDAT 3 24-FEB-09 1U4D 1 VERSN REVDAT 2 19-OCT-04 1U4D 1 JRNL REVDAT 1 31-AUG-04 1U4D 0 JRNL AUTH J.C.LOUGHEED,R.H.CHEN,P.MAK,T.J.STOUT JRNL TITL CRYSTAL STRUCTURES OF THE PHOSPHORYLATED AND JRNL TITL 2 UNPHOSPHORYLATED KINASE DOMAINS OF THE CDC42-ASSOCIATED JRNL TITL 3 TYROSINE KINASE ACK1. JRNL REF J.BIOL.CHEM. V. 279 44039 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15308621 JRNL DOI 10.1074/JBC.M406703200 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1621 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2207 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4168 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.12000 REMARK 3 B22 (A**2) : 2.34000 REMARK 3 B33 (A**2) : -1.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.249 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.571 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4304 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3974 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5821 ; 1.810 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9208 ; 0.927 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 513 ; 6.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 630 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4710 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 905 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 835 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4411 ; 0.240 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2516 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 163 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.315 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 68 ; 0.320 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2584 ; 1.026 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4155 ; 1.852 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1720 ; 2.414 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1666 ; 3.829 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1U4D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB CODE 1U46 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000, SODIUM CHLORIDE, MAGNESIUM REMARK 280 CHLORIDE, TRIS, TCEP, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.45900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 107 REMARK 465 SER A 108 REMARK 465 ALA A 109 REMARK 465 GLY A 110 REMARK 465 GLU A 111 REMARK 465 GLY A 112 REMARK 465 PRO A 113 REMARK 465 LEU A 114 REMARK 465 GLN A 115 REMARK 465 SER A 116 REMARK 465 LEU A 160 REMARK 465 LYS A 161 REMARK 465 PRO A 162 REMARK 465 ASP A 163 REMARK 465 VAL A 164 REMARK 465 LEU A 165 REMARK 465 SER A 166 REMARK 465 GLN A 167 REMARK 465 ASN A 280 REMARK 465 ASP A 281 REMARK 465 GLN A 287 REMARK 465 GLU A 288 REMARK 465 HIS A 289 REMARK 465 ARG A 290 REMARK 465 LYS A 291 REMARK 465 PRO A 390 REMARK 465 THR A 391 REMARK 465 ASP A 392 REMARK 465 MET A 393 REMARK 465 ARG A 394 REMARK 465 ALA A 395 REMARK 465 GLU A 396 REMARK 465 PHE A 397 REMARK 465 GLY B 107 REMARK 465 SER B 108 REMARK 465 ALA B 109 REMARK 465 GLY B 110 REMARK 465 GLU B 111 REMARK 465 GLY B 112 REMARK 465 PRO B 113 REMARK 465 LEU B 114 REMARK 465 GLN B 115 REMARK 465 SER B 116 REMARK 465 LYS B 161 REMARK 465 PRO B 162 REMARK 465 ASP B 163 REMARK 465 VAL B 164 REMARK 465 LEU B 165 REMARK 465 SER B 166 REMARK 465 GLN B 167 REMARK 465 PRO B 168 REMARK 465 GLU B 169 REMARK 465 GLY B 222 REMARK 465 HIS B 223 REMARK 465 PHE B 224 REMARK 465 THR B 391 REMARK 465 ASP B 392 REMARK 465 MET B 393 REMARK 465 ARG B 394 REMARK 465 ALA B 395 REMARK 465 GLU B 396 REMARK 465 PHE B 397 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 185 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 215 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 375 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 375 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP B 125 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 142 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 142 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 231 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 231 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP B 252 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 256 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 256 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 129 -139.32 -125.51 REMARK 500 SER A 136 -60.33 -16.21 REMARK 500 GLN A 221 -107.75 35.34 REMARK 500 ASP A 252 37.06 -148.04 REMARK 500 ASP A 270 72.77 54.12 REMARK 500 ARG A 305 45.82 38.90 REMARK 500 LEU B 129 -147.44 -102.87 REMARK 500 SER B 149 -36.62 -39.84 REMARK 500 SER B 183 34.01 -87.84 REMARK 500 LYS B 219 52.64 -106.16 REMARK 500 ARG B 251 -2.19 79.02 REMARK 500 ASP B 252 40.12 -145.94 REMARK 500 ASP B 270 77.38 55.02 REMARK 500 ALA B 388 40.36 -91.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DBQ A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DBQ B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U46 RELATED DB: PDB REMARK 900 APO ACK1 (KINASE DOMAIN) REMARK 900 RELATED ID: 1U54 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF THE PHOSPHORYLATED AND UNPHOSPHORYLATED REMARK 900 KINASE DOMAINS OF THE TYROSINE KINASE ACK1 BOUND TO AMP-PCP DBREF 1U4D A 109 395 UNP Q07912 ACK1_HUMAN 10 296 DBREF 1U4D B 109 395 UNP Q07912 ACK1_HUMAN 10 296 SEQADV 1U4D GLY A 107 UNP Q07912 CLONING ARTIFACT SEQADV 1U4D SER A 108 UNP Q07912 CLONING ARTIFACT SEQADV 1U4D GLU A 396 UNP Q07912 CLONING ARTIFACT SEQADV 1U4D PHE A 397 UNP Q07912 CLONING ARTIFACT SEQADV 1U4D GLY B 107 UNP Q07912 CLONING ARTIFACT SEQADV 1U4D SER B 108 UNP Q07912 CLONING ARTIFACT SEQADV 1U4D GLU B 396 UNP Q07912 CLONING ARTIFACT SEQADV 1U4D PHE B 397 UNP Q07912 CLONING ARTIFACT SEQRES 1 A 291 GLY SER ALA GLY GLU GLY PRO LEU GLN SER LEU THR CYS SEQRES 2 A 291 LEU ILE GLY GLU LYS ASP LEU ARG LEU LEU GLU LYS LEU SEQRES 3 A 291 GLY ASP GLY SER PHE GLY VAL VAL ARG ARG GLY GLU TRP SEQRES 4 A 291 ASP ALA PRO SER GLY LYS THR VAL SER VAL ALA VAL LYS SEQRES 5 A 291 CYS LEU LYS PRO ASP VAL LEU SER GLN PRO GLU ALA MET SEQRES 6 A 291 ASP ASP PHE ILE ARG GLU VAL ASN ALA MET HIS SER LEU SEQRES 7 A 291 ASP HIS ARG ASN LEU ILE ARG LEU TYR GLY VAL VAL LEU SEQRES 8 A 291 THR PRO PRO MET LYS MET VAL THR GLU LEU ALA PRO LEU SEQRES 9 A 291 GLY SER LEU LEU ASP ARG LEU ARG LYS HIS GLN GLY HIS SEQRES 10 A 291 PHE LEU LEU GLY THR LEU SER ARG TYR ALA VAL GLN VAL SEQRES 11 A 291 ALA GLU GLY MET GLY TYR LEU GLU SER LYS ARG PHE ILE SEQRES 12 A 291 HIS ARG ASP LEU ALA ALA ARG ASN LEU LEU LEU ALA THR SEQRES 13 A 291 ARG ASP LEU VAL LYS ILE GLY ASP PHE GLY LEU MET ARG SEQRES 14 A 291 ALA LEU PRO GLN ASN ASP ASP HIS TYR VAL MET GLN GLU SEQRES 15 A 291 HIS ARG LYS VAL PRO PHE ALA TRP CYS ALA PRO GLU SER SEQRES 16 A 291 LEU LYS THR ARG THR PHE SER HIS ALA SER ASP THR TRP SEQRES 17 A 291 MET PHE GLY VAL THR LEU TRP GLU MET PHE THR TYR GLY SEQRES 18 A 291 GLN GLU PRO TRP ILE GLY LEU ASN GLY SER GLN ILE LEU SEQRES 19 A 291 HIS LYS ILE ASP LYS GLU GLY GLU ARG LEU PRO ARG PRO SEQRES 20 A 291 GLU ASP CYS PRO GLN ASP ILE TYR ASN VAL MET VAL GLN SEQRES 21 A 291 CYS TRP ALA HIS LYS PRO GLU ASP ARG PRO THR PHE VAL SEQRES 22 A 291 ALA LEU ARG ASP PHE LEU LEU GLU ALA GLN PRO THR ASP SEQRES 23 A 291 MET ARG ALA GLU PHE SEQRES 1 B 291 GLY SER ALA GLY GLU GLY PRO LEU GLN SER LEU THR CYS SEQRES 2 B 291 LEU ILE GLY GLU LYS ASP LEU ARG LEU LEU GLU LYS LEU SEQRES 3 B 291 GLY ASP GLY SER PHE GLY VAL VAL ARG ARG GLY GLU TRP SEQRES 4 B 291 ASP ALA PRO SER GLY LYS THR VAL SER VAL ALA VAL LYS SEQRES 5 B 291 CYS LEU LYS PRO ASP VAL LEU SER GLN PRO GLU ALA MET SEQRES 6 B 291 ASP ASP PHE ILE ARG GLU VAL ASN ALA MET HIS SER LEU SEQRES 7 B 291 ASP HIS ARG ASN LEU ILE ARG LEU TYR GLY VAL VAL LEU SEQRES 8 B 291 THR PRO PRO MET LYS MET VAL THR GLU LEU ALA PRO LEU SEQRES 9 B 291 GLY SER LEU LEU ASP ARG LEU ARG LYS HIS GLN GLY HIS SEQRES 10 B 291 PHE LEU LEU GLY THR LEU SER ARG TYR ALA VAL GLN VAL SEQRES 11 B 291 ALA GLU GLY MET GLY TYR LEU GLU SER LYS ARG PHE ILE SEQRES 12 B 291 HIS ARG ASP LEU ALA ALA ARG ASN LEU LEU LEU ALA THR SEQRES 13 B 291 ARG ASP LEU VAL LYS ILE GLY ASP PHE GLY LEU MET ARG SEQRES 14 B 291 ALA LEU PRO GLN ASN ASP ASP HIS TYR VAL MET GLN GLU SEQRES 15 B 291 HIS ARG LYS VAL PRO PHE ALA TRP CYS ALA PRO GLU SER SEQRES 16 B 291 LEU LYS THR ARG THR PHE SER HIS ALA SER ASP THR TRP SEQRES 17 B 291 MET PHE GLY VAL THR LEU TRP GLU MET PHE THR TYR GLY SEQRES 18 B 291 GLN GLU PRO TRP ILE GLY LEU ASN GLY SER GLN ILE LEU SEQRES 19 B 291 HIS LYS ILE ASP LYS GLU GLY GLU ARG LEU PRO ARG PRO SEQRES 20 B 291 GLU ASP CYS PRO GLN ASP ILE TYR ASN VAL MET VAL GLN SEQRES 21 B 291 CYS TRP ALA HIS LYS PRO GLU ASP ARG PRO THR PHE VAL SEQRES 22 B 291 ALA LEU ARG ASP PHE LEU LEU GLU ALA GLN PRO THR ASP SEQRES 23 B 291 MET ARG ALA GLU PHE HET DBQ A 398 18 HET CL B 502 1 HET DBQ B 401 18 HETNAM DBQ DEBROMOHYMENIALDISINE HETNAM CL CHLORIDE ION FORMUL 3 DBQ 2(C11 H11 N5 O2) FORMUL 4 CL CL 1- FORMUL 6 HOH *157(H2 O) HELIX 1 1 GLY A 122 LYS A 124 5 3 HELIX 2 2 PRO A 168 LEU A 184 1 17 HELIX 3 3 SER A 212 GLN A 221 1 10 HELIX 4 4 GLY A 222 PHE A 224 5 3 HELIX 5 5 LEU A 225 LYS A 246 1 22 HELIX 6 6 ALA A 254 ARG A 256 5 3 HELIX 7 7 PRO A 293 CYS A 297 5 5 HELIX 8 8 ALA A 298 ARG A 305 1 8 HELIX 9 9 SER A 308 THR A 325 1 18 HELIX 10 10 ASN A 335 LYS A 345 1 11 HELIX 11 11 PRO A 357 TRP A 368 1 12 HELIX 12 12 LYS A 371 ARG A 375 5 5 HELIX 13 13 THR A 377 GLN A 389 1 13 HELIX 14 14 GLY B 122 LYS B 124 5 3 HELIX 15 15 ALA B 170 SER B 183 1 14 HELIX 16 16 SER B 212 LYS B 219 1 8 HELIX 17 17 LEU B 225 LYS B 246 1 22 HELIX 18 18 ALA B 254 ARG B 256 5 3 HELIX 19 19 PRO B 293 CYS B 297 5 5 HELIX 20 20 ALA B 298 ARG B 305 1 8 HELIX 21 21 HIS B 309 THR B 325 1 17 HELIX 22 22 ASN B 335 LYS B 345 1 11 HELIX 23 23 PRO B 357 TRP B 368 1 12 HELIX 24 24 LYS B 371 ARG B 375 5 5 HELIX 25 25 THR B 377 ALA B 388 1 12 SHEET 1 A 6 CYS A 119 LEU A 120 0 SHEET 2 A 6 LEU A 192 VAL A 196 1 O VAL A 195 N CYS A 119 SHEET 3 A 6 LYS A 202 GLU A 206 -1 O VAL A 204 N GLY A 194 SHEET 4 A 6 THR A 152 LYS A 158 -1 N ALA A 156 O THR A 205 SHEET 5 A 6 GLY A 138 ASP A 146 -1 N ARG A 141 O VAL A 157 SHEET 6 A 6 LEU A 126 GLY A 135 -1 N LEU A 132 O VAL A 140 SHEET 1 B 2 PHE A 248 ILE A 249 0 SHEET 2 B 2 ARG A 275 ALA A 276 -1 O ARG A 275 N ILE A 249 SHEET 1 C 2 LEU A 258 THR A 262 0 SHEET 2 C 2 LEU A 265 ILE A 268 -1 O LYS A 267 N LEU A 259 SHEET 1 D 2 TYR A 284 VAL A 285 0 SHEET 2 D 2 THR A 306 PHE A 307 -1 O PHE A 307 N TYR A 284 SHEET 1 E 6 CYS B 119 LEU B 120 0 SHEET 2 E 6 LEU B 192 VAL B 196 1 O VAL B 195 N CYS B 119 SHEET 3 E 6 LYS B 202 GLU B 206 -1 O VAL B 204 N GLY B 194 SHEET 4 E 6 THR B 152 CYS B 159 -1 N ALA B 156 O THR B 205 SHEET 5 E 6 VAL B 139 ASP B 146 -1 N TRP B 145 O VAL B 153 SHEET 6 E 6 LEU B 126 ASP B 134 -1 N LEU B 132 O VAL B 140 SHEET 1 F 2 PHE B 248 ILE B 249 0 SHEET 2 F 2 ARG B 275 ALA B 276 -1 O ARG B 275 N ILE B 249 SHEET 1 G 2 LEU B 258 LEU B 260 0 SHEET 2 G 2 VAL B 266 ILE B 268 -1 O LYS B 267 N LEU B 259 SHEET 1 H 2 HIS B 283 VAL B 285 0 SHEET 2 H 2 THR B 306 SER B 308 -1 O PHE B 307 N TYR B 284 CISPEP 1 PRO A 199 PRO A 200 0 -3.91 CISPEP 2 PRO B 199 PRO B 200 0 -6.11 SITE 1 AC1 4 ARG B 251 GLN B 287 ARG B 290 HOH B 533 SITE 1 AC2 12 ASP A 134 ALA A 156 LYS A 158 THR A 205 SITE 2 AC2 12 GLU A 206 LEU A 207 ALA A 208 ASN A 257 SITE 3 AC2 12 ASP A 270 HOH A 415 HOH A 440 HOH A 450 SITE 1 AC3 14 LEU B 132 ALA B 156 LYS B 158 THR B 205 SITE 2 AC3 14 GLU B 206 LEU B 207 ALA B 208 ASN B 257 SITE 3 AC3 14 LEU B 259 ASP B 270 HOH B 503 HOH B 523 SITE 4 AC3 14 HOH B 584 HOH B 589 CRYST1 81.552 42.918 85.149 90.00 112.02 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012262 0.000000 0.004959 0.00000 SCALE2 0.000000 0.023300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012668 0.00000