HEADER TRANSPORT PROTEIN 28-JUL-04 1U5T TITLE STRUCTURE OF THE ESCRT-II ENDOSOMAL TRAFFICKING COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: APPEARS TO BE FUNCTIONALLY RELATED TO SNF7; SNF8P; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DEFECTIVE IN VACUOLAR PROTEIN SORTING; VPS36P; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HYPOTHETICAL 23.6 KDA PROTEIN IN YUH1-URA8 INTERGENIC COMPND 11 REGION; COMPND 12 CHAIN: C, D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PST39; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PST39; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 21 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 22 ORGANISM_TAXID: 4932; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PST39 KEYWDS ESCRT, ENDOSOMAL, TRAFFICKING, PROTEIN COMPLEX, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.HIERRO,J.SUN,A.S.RUSNAK,J.KIM,G.PRAG,S.D.EMR,J.H.HURLEY REVDAT 3 14-FEB-24 1U5T 1 REMARK REVDAT 2 24-FEB-09 1U5T 1 VERSN REVDAT 1 21-SEP-04 1U5T 0 JRNL AUTH A.HIERRO,J.SUN,A.S.RUSNAK,J.KIM,G.PRAG,S.D.EMR,J.H.HURLEY JRNL TITL STRUCTURE OF ESCRT-II ENDOSOMAL TRAFFICKING COMPLEX JRNL REF NATURE V. 431 221 2004 JRNL REFN ISSN 0028-0836 JRNL PMID 15329733 JRNL DOI 10.1038/NATURE02914 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.TEO,O.PERISIC,B.GONZALEZ,R.L.WILLIAMS REMARK 1 TITL ESCRT-II, AN ENDOSOME-ASSOCIATED COMPLEX REQUIRED FOR REMARK 1 TITL 2 PROTEIN SORTING: CRYSTAL STRUCTURE AND INTERACTIONS WITH REMARK 1 TITL 3 ESCRT-III AND MEMBRANES REMARK 1 REF DEV.CELL 2004 REMARK 1 REFN ISSN 1534-5807 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 41210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4013 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6055 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.165 REMARK 3 BOND ANGLES (DEGREES) : 2.557 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 9.329 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 15.436; 10.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 18.178; 10.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 25.154; 15.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U5T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023281. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41210 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 6.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NAACETATE, HEPES, PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.88000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.32000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.44000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.88000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.44000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 139.32000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLN A 3 REMARK 465 PHE A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 PHE A 9 REMARK 465 ASP A 10 REMARK 465 GLU A 11 REMARK 465 LEU A 12 REMARK 465 LYS A 13 REMARK 465 ASP A 14 REMARK 465 GLY A 15 REMARK 465 LYS A 16 REMARK 465 TYR A 17 REMARK 465 ASN A 18 REMARK 465 ASP A 19 REMARK 465 LEU A 233 REMARK 465 MET C 1 REMARK 465 VAL C 52 REMARK 465 ILE C 53 REMARK 465 ASN C 54 REMARK 465 ASP C 55 REMARK 465 ASN C 56 REMARK 465 GLU C 57 REMARK 465 LEU C 58 REMARK 465 ASP C 59 REMARK 465 SER C 60 REMARK 465 GLY C 61 REMARK 465 SER C 62 REMARK 465 THR C 63 REMARK 465 ASP C 64 REMARK 465 ASN C 65 REMARK 465 ASP C 66 REMARK 465 ASP C 67 REMARK 465 SER C 68 REMARK 465 LYS C 69 REMARK 465 LYS C 70 REMARK 465 ILE C 71 REMARK 465 LYS C 200 REMARK 465 VAL C 201 REMARK 465 VAL C 202 REMARK 465 MET D 1 REMARK 465 VAL D 52 REMARK 465 ILE D 53 REMARK 465 ASN D 54 REMARK 465 ASP D 55 REMARK 465 ASN D 56 REMARK 465 GLU D 57 REMARK 465 LEU D 58 REMARK 465 ASP D 59 REMARK 465 SER D 60 REMARK 465 GLY D 61 REMARK 465 SER D 62 REMARK 465 THR D 63 REMARK 465 ASP D 64 REMARK 465 ASN D 65 REMARK 465 ASP D 66 REMARK 465 ASP D 67 REMARK 465 SER D 68 REMARK 465 LYS D 69 REMARK 465 LYS D 70 REMARK 465 ILE D 71 REMARK 465 LYS D 200 REMARK 465 VAL D 201 REMARK 465 VAL D 202 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS C 166 N MET C 168 1.94 REMARK 500 O ARG D 24 N GLN D 26 1.94 REMARK 500 O VAL A 196 N SER A 198 2.11 REMARK 500 O GLU A 53 OG SER A 57 2.12 REMARK 500 O LEU C 151 N GLU C 153 2.13 REMARK 500 O THR C 98 N GLY C 101 2.14 REMARK 500 O LEU A 78 N ASP A 80 2.14 REMARK 500 O LEU A 141 N SER A 143 2.15 REMARK 500 O SER C 155 N GLY C 157 2.17 REMARK 500 O GLU A 174 OG SER A 177 2.17 REMARK 500 O THR A 106 N ASP A 108 2.18 REMARK 500 O ASN D 78 N ASP D 80 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 97 CA - CB - CG ANGL. DEV. = -15.3 DEGREES REMARK 500 LEU A 131 CA - CB - CG ANGL. DEV. = -15.0 DEGREES REMARK 500 PRO A 162 C - N - CA ANGL. DEV. = 12.6 DEGREES REMARK 500 ILE B 434 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 ASN B 481 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 PRO B 563 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 PRO C 6 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP C 49 N - CA - C ANGL. DEV. = -20.4 DEGREES REMARK 500 ILE C 197 N - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 PRO D 6 C - N - CA ANGL. DEV. = -18.7 DEGREES REMARK 500 VAL D 48 N - CA - C ANGL. DEV. = -19.9 DEGREES REMARK 500 SER D 84 N - CA - C ANGL. DEV. = 21.1 DEGREES REMARK 500 PRO D 105 C - N - CA ANGL. DEV. = 11.9 DEGREES REMARK 500 LYS D 195 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 22 -39.35 -155.10 REMARK 500 ILE A 24 2.35 -53.34 REMARK 500 LEU A 25 -40.71 -135.46 REMARK 500 SER A 29 -78.79 -49.53 REMARK 500 ASP A 34 -71.11 -49.80 REMARK 500 GLN A 35 -39.61 -31.45 REMARK 500 VAL A 38 -76.95 -78.66 REMARK 500 PHE A 39 -29.65 -30.39 REMARK 500 GLU A 41 -17.19 -49.56 REMARK 500 ARG A 42 -70.53 -76.68 REMARK 500 HIS A 50 48.56 -64.75 REMARK 500 SER A 57 76.55 -158.60 REMARK 500 PRO A 58 -63.42 -24.67 REMARK 500 ARG A 61 -81.21 -54.02 REMARK 500 PHE A 64 -5.91 -52.79 REMARK 500 HIS A 66 -2.69 -52.44 REMARK 500 MET A 67 -67.17 -95.46 REMARK 500 LEU A 76 -23.12 -33.09 REMARK 500 PHE A 79 67.71 -50.43 REMARK 500 ASP A 80 -45.37 -164.64 REMARK 500 LYS A 83 -54.98 -15.86 REMARK 500 PHE A 86 21.09 -68.44 REMARK 500 GLN A 105 -4.13 -48.72 REMARK 500 LYS A 107 -23.94 -24.26 REMARK 500 ASN A 110 -92.01 -98.13 REMARK 500 GLU A 120 -81.35 -74.84 REMARK 500 LYS A 121 39.28 -75.88 REMARK 500 VAL A 122 -72.99 -153.84 REMARK 500 PHE A 124 54.50 -116.93 REMARK 500 ASN A 128 89.83 44.48 REMARK 500 LEU A 131 -59.60 -25.82 REMARK 500 ASP A 133 -76.24 -44.74 REMARK 500 LYS A 142 -20.35 -35.48 REMARK 500 ASP A 168 -71.02 -94.80 REMARK 500 SER A 177 -27.20 -32.40 REMARK 500 LEU A 186 -29.30 -35.02 REMARK 500 ALA A 189 -79.20 -38.69 REMARK 500 GLU A 194 -145.96 -52.54 REMARK 500 ARG A 197 39.00 -58.80 REMARK 500 SER A 198 -72.50 -142.63 REMARK 500 ASP A 214 110.63 -165.28 REMARK 500 ARG A 231 107.44 -46.54 REMARK 500 GLU B 399 72.94 -60.56 REMARK 500 LYS B 400 73.41 -156.07 REMARK 500 LYS B 404 -60.56 -25.82 REMARK 500 GLU B 405 37.71 -68.21 REMARK 500 LEU B 406 -63.75 -125.16 REMARK 500 PHE B 407 -38.90 -38.43 REMARK 500 LEU B 408 -79.98 -70.38 REMARK 500 ASP B 409 -56.98 -20.94 REMARK 500 REMARK 500 THIS ENTRY HAS 202 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE C 165 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1U5T A 1 233 UNP Q12483 SNF8_YEAST 1 233 DBREF 1U5T B 396 564 UNP Q06696 VPS36_YEAST 396 564 DBREF 1U5T C 1 202 UNP P47142 VPS25_YEAST 1 202 DBREF 1U5T D 1 202 UNP P47142 VPS25_YEAST 1 202 SEQRES 1 A 233 MET LYS GLN PHE GLY LEU ALA ALA PHE ASP GLU LEU LYS SEQRES 2 A 233 ASP GLY LYS TYR ASN ASP VAL ASN LYS THR ILE LEU GLU SEQRES 3 A 233 LYS GLN SER VAL GLU LEU ARG ASP GLN LEU MET VAL PHE SEQRES 4 A 233 GLN GLU ARG LEU VAL GLU PHE ALA LYS LYS HIS ASN SER SEQRES 5 A 233 GLU LEU GLN ALA SER PRO GLU PHE ARG SER LYS PHE MET SEQRES 6 A 233 HIS MET CYS SER SER ILE GLY ILE ASP PRO LEU SER LEU SEQRES 7 A 233 PHE ASP ARG ASP LYS HIS LEU PHE THR VAL ASN ASP PHE SEQRES 8 A 233 TYR TYR GLU VAL CYS LEU LYS VAL ILE GLU ILE CYS ARG SEQRES 9 A 233 GLN THR LYS ASP MET ASN GLY GLY VAL ILE SER PHE GLN SEQRES 10 A 233 GLU LEU GLU LYS VAL HIS PHE ARG LYS LEU ASN VAL GLY SEQRES 11 A 233 LEU ASP ASP LEU GLU LYS SER ILE ASP MET LEU LYS SER SEQRES 12 A 233 LEU GLU CYS PHE GLU ILE PHE GLN ILE ARG GLY LYS LYS SEQRES 13 A 233 PHE LEU ARG SER VAL PRO ASN GLU LEU THR SER ASP GLN SEQRES 14 A 233 THR LYS ILE LEU GLU ILE CYS SER ILE LEU GLY TYR SER SEQRES 15 A 233 SER ILE SER LEU LEU LYS ALA ASN LEU GLY TRP GLU ALA SEQRES 16 A 233 VAL ARG SER LYS SER ALA LEU ASP GLU MET VAL ALA ASN SEQRES 17 A 233 GLY LEU LEU TRP ILE ASP TYR GLN GLY GLY ALA GLU ALA SEQRES 18 A 233 LEU TYR TRP ASP PRO SER TRP ILE THR ARG GLN LEU SEQRES 1 B 169 LEU ASP ARG GLU LYS PHE LEU ASN LYS GLU LEU PHE LEU SEQRES 2 B 169 ASP GLU ILE ALA ARG GLU ILE TYR GLU PHE THR LEU SER SEQRES 3 B 169 GLU PHE LYS ASP LEU ASN SER ASP THR ASN TYR MET ILE SEQRES 4 B 169 ILE THR LEU VAL ASP LEU TYR ALA MET TYR ASN LYS SER SEQRES 5 B 169 MET ARG ILE GLY THR GLY LEU ILE SER PRO MET GLU MET SEQRES 6 B 169 ARG GLU ALA CYS GLU ARG PHE GLU HIS LEU GLY LEU ASN SEQRES 7 B 169 GLU LEU LYS LEU VAL LYS VAL ASN LYS ARG ILE LEU CYS SEQRES 8 B 169 VAL THR SER GLU LYS PHE ASP VAL VAL LYS GLU LYS LEU SEQRES 9 B 169 VAL ASP LEU ILE GLY ASP ASN PRO GLY SER ASP LEU LEU SEQRES 10 B 169 ARG LEU THR GLN ILE LEU SER SER ASN ASN SER LYS SER SEQRES 11 B 169 ASN TRP THR LEU GLY ILE LEU MET GLU VAL LEU GLN ASN SEQRES 12 B 169 CYS VAL ASP GLU GLY ASP LEU LEU ILE ASP LYS GLN LEU SEQRES 13 B 169 SER GLY ILE TYR TYR TYR LYS ASN SER TYR TRP PRO SER SEQRES 1 C 202 MET SER ALA LEU PRO PRO VAL TYR SER PHE PRO PRO LEU SEQRES 2 C 202 TYR THR ARG GLN PRO ASN SER LEU THR ARG ARG GLN GLN SEQRES 3 C 202 ILE SER THR TRP ILE ASP ILE ILE SER GLN TYR CYS LYS SEQRES 4 C 202 THR LYS LYS ILE TRP TYR MET SER VAL ASP GLY THR VAL SEQRES 5 C 202 ILE ASN ASP ASN GLU LEU ASP SER GLY SER THR ASP ASN SEQRES 6 C 202 ASP ASP SER LYS LYS ILE SER LYS ASN LEU PHE ASN ASN SEQRES 7 C 202 GLU ASP ILE GLN ARG SER VAL SER GLN VAL PHE ILE ASP SEQRES 8 C 202 GLU ILE TRP SER GLN MET THR LYS GLU GLY LYS CYS LEU SEQRES 9 C 202 PRO ILE ASP GLN SER GLY ARG ARG SER SER ASN THR THR SEQRES 10 C 202 THR THR ARG TYR PHE ILE LEU TRP LYS SER LEU ASP SER SEQRES 11 C 202 TRP ALA SER LEU ILE LEU GLN TRP PHE GLU ASP SER GLY SEQRES 12 C 202 LYS LEU ASN GLN VAL ILE THR LEU TYR GLU LEU SER GLU SEQRES 13 C 202 GLY ASP GLU THR VAL ASN TRP GLU PHE HIS ARG MET PRO SEQRES 14 C 202 GLU SER LEU LEU TYR TYR CYS LEU LYS PRO LEU CYS ASP SEQRES 15 C 202 ARG ASN ARG ALA THR MET LEU LYS ASP GLU ASN ASP LYS SEQRES 16 C 202 VAL ILE ALA ILE LYS VAL VAL SEQRES 1 D 202 MET SER ALA LEU PRO PRO VAL TYR SER PHE PRO PRO LEU SEQRES 2 D 202 TYR THR ARG GLN PRO ASN SER LEU THR ARG ARG GLN GLN SEQRES 3 D 202 ILE SER THR TRP ILE ASP ILE ILE SER GLN TYR CYS LYS SEQRES 4 D 202 THR LYS LYS ILE TRP TYR MET SER VAL ASP GLY THR VAL SEQRES 5 D 202 ILE ASN ASP ASN GLU LEU ASP SER GLY SER THR ASP ASN SEQRES 6 D 202 ASP ASP SER LYS LYS ILE SER LYS ASN LEU PHE ASN ASN SEQRES 7 D 202 GLU ASP ILE GLN ARG SER VAL SER GLN VAL PHE ILE ASP SEQRES 8 D 202 GLU ILE TRP SER GLN MET THR LYS GLU GLY LYS CYS LEU SEQRES 9 D 202 PRO ILE ASP GLN SER GLY ARG ARG SER SER ASN THR THR SEQRES 10 D 202 THR THR ARG TYR PHE ILE LEU TRP LYS SER LEU ASP SER SEQRES 11 D 202 TRP ALA SER LEU ILE LEU GLN TRP PHE GLU ASP SER GLY SEQRES 12 D 202 LYS LEU ASN GLN VAL ILE THR LEU TYR GLU LEU SER GLU SEQRES 13 D 202 GLY ASP GLU THR VAL ASN TRP GLU PHE HIS ARG MET PRO SEQRES 14 D 202 GLU SER LEU LEU TYR TYR CYS LEU LYS PRO LEU CYS ASP SEQRES 15 D 202 ARG ASN ARG ALA THR MET LEU LYS ASP GLU ASN ASP LYS SEQRES 16 D 202 VAL ILE ALA ILE LYS VAL VAL HELIX 1 1 LYS A 22 HIS A 50 1 29 HELIX 2 2 SER A 57 GLY A 72 1 16 HELIX 3 3 ASP A 74 PHE A 79 1 6 HELIX 4 4 ASP A 82 PHE A 86 5 5 HELIX 5 5 THR A 87 LYS A 107 1 21 HELIX 6 6 PHE A 116 VAL A 122 1 7 HELIX 7 7 GLY A 130 LYS A 142 1 13 HELIX 8 8 ASP A 168 ILE A 175 1 8 HELIX 9 9 SER A 183 GLY A 192 1 10 HELIX 10 10 ALA A 195 ASN A 208 1 14 HELIX 11 11 ASP A 225 ARG A 231 5 7 HELIX 12 12 LEU B 406 SER B 421 1 16 HELIX 13 13 VAL B 438 SER B 447 1 10 HELIX 14 14 SER B 456 GLU B 465 1 10 HELIX 15 15 ARG B 466 GLY B 471 5 6 HELIX 16 16 PHE B 492 ASN B 506 1 15 HELIX 17 17 ASP B 510 SER B 519 1 10 HELIX 18 18 THR B 528 GLY B 543 1 16 HELIX 19 19 PRO C 5 THR C 15 5 11 HELIX 20 20 ASN C 19 LYS C 39 1 21 HELIX 21 21 SER C 86 LYS C 99 1 14 HELIX 22 22 SER C 127 GLY C 143 1 17 HELIX 23 23 THR C 150 SER C 155 1 6 HELIX 24 24 PRO C 169 LYS C 178 1 10 HELIX 25 25 PRO D 6 TYR D 14 5 9 HELIX 26 26 ASN D 19 LYS D 39 1 21 HELIX 27 27 SER D 86 GLY D 101 1 16 HELIX 28 28 LEU D 128 SER D 133 1 6 HELIX 29 29 THR D 150 SER D 155 1 6 HELIX 30 30 PRO D 169 LYS D 178 1 10 HELIX 31 31 PRO D 179 ARG D 183 5 5 SHEET 1 A 3 ILE A 114 SER A 115 0 SHEET 2 A 3 LYS A 155 LEU A 158 -1 O LEU A 158 N ILE A 114 SHEET 3 A 3 ILE A 149 ILE A 152 -1 N PHE A 150 O PHE A 157 SHEET 1 B 2 TRP A 212 ASP A 214 0 SHEET 2 B 2 LEU A 222 TRP A 224 -1 O TRP A 224 N TRP A 212 SHEET 1 C 3 ILE B 435 THR B 436 0 SHEET 2 C 3 ILE B 484 THR B 488 -1 O VAL B 487 N ILE B 435 SHEET 3 C 3 LYS B 476 VAL B 480 -1 N VAL B 478 O CYS B 486 SHEET 1 D 2 LEU B 545 LYS B 549 0 SHEET 2 D 2 ILE B 554 LYS B 558 -1 O TYR B 557 N LEU B 546 SHEET 1 E 3 TYR C 45 MET C 46 0 SHEET 2 E 3 TYR C 121 ILE C 123 -1 O TYR C 121 N MET C 46 SHEET 3 E 3 CYS C 103 PRO C 105 -1 N LEU C 104 O PHE C 122 SHEET 1 F 3 VAL C 148 ILE C 149 0 SHEET 2 F 3 ILE C 197 ALA C 198 -1 O ILE C 197 N ILE C 149 SHEET 3 F 3 THR C 187 MET C 188 -1 N THR C 187 O ALA C 198 SHEET 1 G 2 TYR D 45 MET D 46 0 SHEET 2 G 2 TYR D 121 PHE D 122 -1 O TYR D 121 N MET D 46 CRYST1 150.040 150.040 185.760 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006665 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005383 0.00000