HEADER LIGASE 04-AUG-04 1U7X TITLE CRYSTAL STRUCTURE OF A MUTANT M. JANNASHII TYROSYL-TRNA SYNTHETASE TITLE 2 SPECIFIC FOR O-METHYL-TYROSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TYROSINE--TRNA LIGASE, TYRRS; COMPND 5 EC: 6.1.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: TYRS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS ROSSMANN FOLD, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,L.WANG,P.G.SCHULTZ,I.A.WILSON REVDAT 5 23-AUG-23 1U7X 1 REMARK REVDAT 4 20-OCT-21 1U7X 1 REMARK SEQADV LINK REVDAT 3 12-NOV-14 1U7X 1 KEYWDS REVDAT 2 24-FEB-09 1U7X 1 VERSN REVDAT 1 24-MAY-05 1U7X 0 JRNL AUTH Y.ZHANG,L.WANG,P.G.SCHULTZ,I.A.WILSON JRNL TITL CRYSTAL STRUCTURES OF APO WILD-TYPE M. JANNASCHII JRNL TITL 2 TYROSYL-TRNA SYNTHETASE (TYRRS) AND AN ENGINEERED TYRRS JRNL TITL 3 SPECIFIC FOR O-METHYL-L-TYROSINE. JRNL REF PROTEIN SCI. V. 14 1340 2005 JRNL REFN ISSN 0961-8368 JRNL PMID 15840835 JRNL DOI 10.1110/PS.041239305 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 14836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1471 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.14 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.033 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4887 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.38000 REMARK 3 B22 (A**2) : -7.95000 REMARK 3 B33 (A**2) : -5.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023357. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96860 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14836 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14800 REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51700 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1U7D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-15% PEG4000, 0.2M AMMONIUM SULFATE, REMARK 280 0.2M SODIUM ACETATE, , PH 5.0, LIQUID DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.68550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.88250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 92.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.88250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.68550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 92.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 HIS B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 139 CG CD NE CZ NH1 NH2 REMARK 470 SER B 208 OG REMARK 470 LYS B 209 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 140 O ASP A 141 1.70 REMARK 500 NH2 ARG A 131 OE1 GLU A 140 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 140 C ASP A 141 N 0.222 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 139 CA - C - N ANGL. DEV. = 16.9 DEGREES REMARK 500 ARG A 139 O - C - N ANGL. DEV. = -24.3 DEGREES REMARK 500 PRO A 144 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 2 100.33 71.83 REMARK 500 GLU A 13 153.18 174.58 REMARK 500 ILE A 15 98.35 -58.06 REMARK 500 SER A 16 87.29 77.87 REMARK 500 ASN A 57 28.05 -75.77 REMARK 500 ASN A 74 31.43 -64.55 REMARK 500 GLN A 75 87.61 49.14 REMARK 500 GLN A 109 7.56 -69.56 REMARK 500 ASP A 111 155.42 -45.10 REMARK 500 LYS A 112 -75.40 -49.93 REMARK 500 ILE A 137 -97.96 -64.20 REMARK 500 ARG A 139 -75.89 -63.26 REMARK 500 GLU A 140 87.15 150.74 REMARK 500 ASP A 141 151.77 -7.08 REMARK 500 GLU A 202 -105.87 -119.74 REMARK 500 MET A 205 50.28 -68.90 REMARK 500 ALA A 229 141.53 -28.90 REMARK 500 CYS A 231 75.92 -170.36 REMARK 500 ASN A 239 98.85 -61.66 REMARK 500 ARG A 257 137.00 167.45 REMARK 500 GLU A 259 -3.87 -52.75 REMARK 500 LEU A 265 -154.69 -123.46 REMARK 500 THR A 266 81.65 -176.10 REMARK 500 LYS A 280 -21.26 83.98 REMARK 500 LYS A 304 -72.42 -42.50 REMARK 500 ARG A 305 32.98 -65.67 REMARK 500 ASP B 2 80.12 47.89 REMARK 500 GLU B 13 158.56 171.85 REMARK 500 ILE B 15 98.36 -61.07 REMARK 500 SER B 16 72.47 86.76 REMARK 500 PRO B 37 130.66 -34.20 REMARK 500 ALA B 67 74.78 -67.86 REMARK 500 ASN B 74 38.27 -75.63 REMARK 500 GLN B 75 28.31 43.55 REMARK 500 LYS B 76 -107.30 -81.12 REMARK 500 LEU B 79 -82.64 15.25 REMARK 500 PHE B 108 -42.74 -141.99 REMARK 500 GLN B 109 -0.49 -54.89 REMARK 500 ILE B 137 -78.93 -74.01 REMARK 500 ARG B 139 -131.52 31.08 REMARK 500 VAL B 188 151.80 -47.59 REMARK 500 LEU B 199 -1.79 -53.38 REMARK 500 LYS B 209 52.37 118.44 REMARK 500 PHE B 212 153.00 167.41 REMARK 500 CYS B 231 81.16 -163.25 REMARK 500 ASP B 264 142.36 -30.46 REMARK 500 ARG B 305 0.50 -67.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 139 21.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 500 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 2 OD2 REMARK 620 2 GLU A 5 OE1 70.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U7D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO M. JANNASHII TYROSYL-TRNA SYNTHETASE DBREF 1U7X A 1 306 UNP Q57834 SYY_METJA 1 306 DBREF 1U7X B 1 306 UNP Q57834 SYY_METJA 1 306 SEQADV 1U7X GLN A 32 UNP Q57834 TYR 32 ENGINEERED MUTATION SEQADV 1U7X THR A 107 UNP Q57834 GLU 107 ENGINEERED MUTATION SEQADV 1U7X ALA A 158 UNP Q57834 ASP 158 ENGINEERED MUTATION SEQADV 1U7X PRO A 162 UNP Q57834 LEU 162 ENGINEERED MUTATION SEQADV 1U7X HIS A 307 UNP Q57834 EXPRESSION TAG SEQADV 1U7X HIS A 308 UNP Q57834 EXPRESSION TAG SEQADV 1U7X HIS A 309 UNP Q57834 EXPRESSION TAG SEQADV 1U7X HIS A 310 UNP Q57834 EXPRESSION TAG SEQADV 1U7X HIS A 311 UNP Q57834 EXPRESSION TAG SEQADV 1U7X HIS A 312 UNP Q57834 EXPRESSION TAG SEQADV 1U7X GLN B 32 UNP Q57834 TYR 32 ENGINEERED MUTATION SEQADV 1U7X THR B 107 UNP Q57834 GLU 107 ENGINEERED MUTATION SEQADV 1U7X ALA B 158 UNP Q57834 ASP 158 ENGINEERED MUTATION SEQADV 1U7X PRO B 162 UNP Q57834 LEU 162 ENGINEERED MUTATION SEQADV 1U7X HIS B 307 UNP Q57834 EXPRESSION TAG SEQADV 1U7X HIS B 308 UNP Q57834 EXPRESSION TAG SEQADV 1U7X HIS B 309 UNP Q57834 EXPRESSION TAG SEQADV 1U7X HIS B 310 UNP Q57834 EXPRESSION TAG SEQADV 1U7X HIS B 311 UNP Q57834 EXPRESSION TAG SEQADV 1U7X HIS B 312 UNP Q57834 EXPRESSION TAG SEQRES 1 A 312 MET ASP GLU PHE GLU MET ILE LYS ARG ASN THR SER GLU SEQRES 2 A 312 ILE ILE SER GLU GLU GLU LEU ARG GLU VAL LEU LYS LYS SEQRES 3 A 312 ASP GLU LYS SER ALA GLN ILE GLY PHE GLU PRO SER GLY SEQRES 4 A 312 LYS ILE HIS LEU GLY HIS TYR LEU GLN ILE LYS LYS MET SEQRES 5 A 312 ILE ASP LEU GLN ASN ALA GLY PHE ASP ILE ILE ILE LEU SEQRES 6 A 312 LEU ALA ASP LEU HIS ALA TYR LEU ASN GLN LYS GLY GLU SEQRES 7 A 312 LEU ASP GLU ILE ARG LYS ILE GLY ASP TYR ASN LYS LYS SEQRES 8 A 312 VAL PHE GLU ALA MET GLY LEU LYS ALA LYS TYR VAL TYR SEQRES 9 A 312 GLY SER THR PHE GLN LEU ASP LYS ASP TYR THR LEU ASN SEQRES 10 A 312 VAL TYR ARG LEU ALA LEU LYS THR THR LEU LYS ARG ALA SEQRES 11 A 312 ARG ARG SER MET GLU LEU ILE ALA ARG GLU ASP GLU ASN SEQRES 12 A 312 PRO LYS VAL ALA GLU VAL ILE TYR PRO ILE MET GLN VAL SEQRES 13 A 312 ASN ALA ILE HIS TYR PRO GLY VAL ASP VAL ALA VAL GLY SEQRES 14 A 312 GLY MET GLU GLN ARG LYS ILE HIS MET LEU ALA ARG GLU SEQRES 15 A 312 LEU LEU PRO LYS LYS VAL VAL CYS ILE HIS ASN PRO VAL SEQRES 16 A 312 LEU THR GLY LEU ASP GLY GLU GLY LYS MET SER SER SER SEQRES 17 A 312 LYS GLY ASN PHE ILE ALA VAL ASP ASP SER PRO GLU GLU SEQRES 18 A 312 ILE ARG ALA LYS ILE LYS LYS ALA TYR CYS PRO ALA GLY SEQRES 19 A 312 VAL VAL GLU GLY ASN PRO ILE MET GLU ILE ALA LYS TYR SEQRES 20 A 312 PHE LEU GLU TYR PRO LEU THR ILE LYS ARG PRO GLU LYS SEQRES 21 A 312 PHE GLY GLY ASP LEU THR VAL ASN SER TYR GLU GLU LEU SEQRES 22 A 312 GLU SER LEU PHE LYS ASN LYS GLU LEU HIS PRO MET ASP SEQRES 23 A 312 LEU LYS ASN ALA VAL ALA GLU GLU LEU ILE LYS ILE LEU SEQRES 24 A 312 GLU PRO ILE ARG LYS ARG LEU HIS HIS HIS HIS HIS HIS SEQRES 1 B 312 MET ASP GLU PHE GLU MET ILE LYS ARG ASN THR SER GLU SEQRES 2 B 312 ILE ILE SER GLU GLU GLU LEU ARG GLU VAL LEU LYS LYS SEQRES 3 B 312 ASP GLU LYS SER ALA GLN ILE GLY PHE GLU PRO SER GLY SEQRES 4 B 312 LYS ILE HIS LEU GLY HIS TYR LEU GLN ILE LYS LYS MET SEQRES 5 B 312 ILE ASP LEU GLN ASN ALA GLY PHE ASP ILE ILE ILE LEU SEQRES 6 B 312 LEU ALA ASP LEU HIS ALA TYR LEU ASN GLN LYS GLY GLU SEQRES 7 B 312 LEU ASP GLU ILE ARG LYS ILE GLY ASP TYR ASN LYS LYS SEQRES 8 B 312 VAL PHE GLU ALA MET GLY LEU LYS ALA LYS TYR VAL TYR SEQRES 9 B 312 GLY SER THR PHE GLN LEU ASP LYS ASP TYR THR LEU ASN SEQRES 10 B 312 VAL TYR ARG LEU ALA LEU LYS THR THR LEU LYS ARG ALA SEQRES 11 B 312 ARG ARG SER MET GLU LEU ILE ALA ARG GLU ASP GLU ASN SEQRES 12 B 312 PRO LYS VAL ALA GLU VAL ILE TYR PRO ILE MET GLN VAL SEQRES 13 B 312 ASN ALA ILE HIS TYR PRO GLY VAL ASP VAL ALA VAL GLY SEQRES 14 B 312 GLY MET GLU GLN ARG LYS ILE HIS MET LEU ALA ARG GLU SEQRES 15 B 312 LEU LEU PRO LYS LYS VAL VAL CYS ILE HIS ASN PRO VAL SEQRES 16 B 312 LEU THR GLY LEU ASP GLY GLU GLY LYS MET SER SER SER SEQRES 17 B 312 LYS GLY ASN PHE ILE ALA VAL ASP ASP SER PRO GLU GLU SEQRES 18 B 312 ILE ARG ALA LYS ILE LYS LYS ALA TYR CYS PRO ALA GLY SEQRES 19 B 312 VAL VAL GLU GLY ASN PRO ILE MET GLU ILE ALA LYS TYR SEQRES 20 B 312 PHE LEU GLU TYR PRO LEU THR ILE LYS ARG PRO GLU LYS SEQRES 21 B 312 PHE GLY GLY ASP LEU THR VAL ASN SER TYR GLU GLU LEU SEQRES 22 B 312 GLU SER LEU PHE LYS ASN LYS GLU LEU HIS PRO MET ASP SEQRES 23 B 312 LEU LYS ASN ALA VAL ALA GLU GLU LEU ILE LYS ILE LEU SEQRES 24 B 312 GLU PRO ILE ARG LYS ARG LEU HIS HIS HIS HIS HIS HIS HET K A 500 1 HETNAM K POTASSIUM ION FORMUL 3 K K 1+ HELIX 1 1 ASP A 2 ARG A 9 1 8 HELIX 2 2 SER A 16 LYS A 26 1 11 HELIX 3 3 HIS A 42 ASN A 57 1 16 HELIX 4 4 ALA A 67 ASN A 74 1 8 HELIX 5 5 GLU A 78 GLY A 97 1 20 HELIX 6 6 SER A 106 PHE A 108 5 3 HELIX 7 7 ASP A 111 LYS A 124 1 14 HELIX 8 8 THR A 126 ALA A 138 1 13 HELIX 9 9 LYS A 145 TYR A 161 1 17 HELIX 10 10 GLN A 173 LEU A 184 1 12 HELIX 11 11 SER A 218 ALA A 229 1 12 HELIX 12 12 ASN A 239 LEU A 249 1 11 HELIX 13 13 SER A 269 LYS A 280 1 12 HELIX 14 14 HIS A 283 ARG A 305 1 23 HELIX 15 15 ASP B 2 ARG B 9 1 8 HELIX 16 16 SER B 16 LYS B 26 1 11 HELIX 17 17 HIS B 42 ALA B 58 1 17 HELIX 18 18 ALA B 67 ASN B 74 1 8 HELIX 19 19 LEU B 79 ALA B 95 1 17 HELIX 20 20 SER B 106 PHE B 108 5 3 HELIX 21 21 ASP B 111 LEU B 123 1 13 HELIX 22 22 THR B 126 ALA B 138 1 13 HELIX 23 23 LYS B 145 TYR B 161 1 17 HELIX 24 24 GLN B 173 LEU B 184 1 12 HELIX 25 25 SER B 218 ALA B 229 1 12 HELIX 26 26 ASN B 239 LEU B 249 1 11 HELIX 27 27 PRO B 258 GLY B 262 5 5 HELIX 28 28 SER B 269 LYS B 280 1 12 HELIX 29 29 HIS B 283 ARG B 305 1 23 SHEET 1 A 6 GLU A 13 ILE A 15 0 SHEET 2 A 6 VAL A 189 ASN A 193 -1 O CYS A 190 N ILE A 15 SHEET 3 A 6 VAL A 166 GLY A 170 1 N ALA A 167 O ILE A 191 SHEET 4 A 6 LYS A 29 PHE A 35 1 N GLN A 32 O VAL A 166 SHEET 5 A 6 PHE A 60 LEU A 66 1 O ASP A 61 N LYS A 29 SHEET 6 A 6 LYS A 101 TYR A 104 1 O VAL A 103 N LEU A 66 SHEET 1 B 6 GLU B 13 ILE B 15 0 SHEET 2 B 6 VAL B 189 ASN B 193 -1 O CYS B 190 N ILE B 15 SHEET 3 B 6 VAL B 166 GLY B 170 1 N ALA B 167 O VAL B 189 SHEET 4 B 6 SER B 30 PHE B 35 1 N GLN B 32 O VAL B 166 SHEET 5 B 6 ASP B 61 LEU B 66 1 O LEU B 65 N PHE B 35 SHEET 6 B 6 LYS B 101 TYR B 104 1 O LYS B 101 N ILE B 64 LINK OD2 ASP A 2 K K A 500 1555 1555 2.49 LINK OE1 GLU A 5 K K A 500 1555 1555 2.66 CISPEP 1 TYR A 251 PRO A 252 0 0.24 CISPEP 2 TYR B 251 PRO B 252 0 0.11 SITE 1 AC1 2 ASP A 2 GLU A 5 CRYST1 45.371 185.000 93.765 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005405 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010665 0.00000