HEADER PROTEIN TRANSPORT 04-AUG-04 1U81 TITLE DELTA-17 HUMAN ADP RIBOSYLATION FACTOR 1 COMPLEXED WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3 KEYWDS DELTA17ARF1, D17ARF1, ARF1, GDP-BINDING, MEMBRANE TRAFFICKING, RDC KEYWDS 2 REFINEMENT, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 11 AUTHOR R.D.SEIDEL,J.C.AMOR,R.A.KAHN,J.H.PRESTEGARD REVDAT 6 01-MAY-24 1U81 1 REMARK REVDAT 5 15-SEP-10 1U81 1 JRNL AUTHOR REVDAT 4 29-DEC-09 1U81 1 JRNL REVDAT 3 24-FEB-09 1U81 1 VERSN REVDAT 2 26-APR-05 1U81 1 JRNL REVDAT 1 05-OCT-04 1U81 0 JRNL AUTH R.D.SEIDEL,J.C.AMOR,R.A.KAHN,J.H.PRESTEGARD JRNL TITL CONFORMATIONAL CHANGES IN HUMAN ARF1 ON NUCLEOTIDE EXCHANGE JRNL TITL 2 AND DELETION OF MEMBRANE-BINDING ELEMENTS. JRNL REF J.BIOL.CHEM. V. 279 48307 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15308674 JRNL DOI 10.1074/JBC.M402109200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR-NIH 2.9.1 REMARK 3 AUTHORS : C.D.SCHWIETERS, J.J.KUSZEWSKI, N.TJANDRA, REMARK 3 G.M.CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U81 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023361. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305; 301; 298 REMARK 210 PH : 7; 7; 7 REMARK 210 IONIC STRENGTH : 50MM SALT; 50MM SALT; 50MM SALT REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 10MM KPO4, 50MM NACL, 1MM MGCL2, REMARK 210 5MM NAN3, 90% H2O, 10% D2O; 7.5% REMARK 210 (W/V) ETHERBICELLE IN 10MM KPO4, REMARK 210 50MM NACL, 1MM MGCL2, 90% H2O, REMARK 210 10% D2O; 4% PENTAETHYLENE GLYCOL REMARK 210 OCTYLETHER IN 10MM KPO4, 50MM REMARK 210 NACL, 1MM MGCL2, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : ASSIGNMENT SUITE; IPAP-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 300 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : CARTESIAN MIN (NO RDC), TORSION REMARK 210 ANGLE MIN (RAMP RDC), CARTESIAN REMARK 210 MIN (RAMP RDC), CARTESIAN MIN REMARK 210 (RO RDC), TORSION ANGLE MIN (RDC) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 11 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-11 REMARK 470 RES CSSEQI ATOMS REMARK 470 LYS A 181 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 22 89.33 -68.75 REMARK 500 1 LEU A 25 -159.95 -70.51 REMARK 500 1 LYS A 38 61.75 60.07 REMARK 500 1 GLU A 41 128.72 -24.46 REMARK 500 1 PRO A 47 -76.11 -59.11 REMARK 500 1 ILE A 49 87.31 -31.97 REMARK 500 1 THR A 55 64.96 -65.65 REMARK 500 1 LYS A 59 -143.64 74.45 REMARK 500 1 TRP A 66 -178.25 176.15 REMARK 500 1 GLN A 71 50.55 177.16 REMARK 500 1 ASP A 72 -148.84 51.85 REMARK 500 1 ILE A 74 81.05 45.86 REMARK 500 1 PRO A 76 11.37 -63.42 REMARK 500 1 LEU A 88 96.42 -178.36 REMARK 500 1 ASP A 93 85.06 -50.42 REMARK 500 1 ASP A 96 92.27 -46.72 REMARK 500 1 VAL A 100 -54.08 -7.74 REMARK 500 1 MET A 110 13.68 -60.16 REMARK 500 1 GLU A 113 121.02 -29.35 REMARK 500 1 LEU A 116 56.69 -109.84 REMARK 500 1 ARG A 117 -74.58 -75.01 REMARK 500 1 ALA A 119 108.00 -28.66 REMARK 500 1 LYS A 127 25.35 81.91 REMARK 500 1 ASP A 129 3.89 -58.88 REMARK 500 1 ALA A 133 164.25 -37.44 REMARK 500 1 GLU A 138 1.59 -65.18 REMARK 500 1 ASP A 141 -86.11 -106.01 REMARK 500 1 LYS A 142 -5.49 -39.59 REMARK 500 1 ARG A 149 -169.34 -121.34 REMARK 500 1 HIS A 150 -44.65 70.37 REMARK 500 1 TYR A 154 137.05 -172.37 REMARK 500 2 ILE A 20 116.78 -160.26 REMARK 500 2 LEU A 25 -168.15 -62.79 REMARK 500 2 PRO A 47 -73.11 -59.13 REMARK 500 2 ILE A 49 101.72 -22.44 REMARK 500 2 THR A 55 72.50 -62.54 REMARK 500 2 TYR A 58 134.99 -170.01 REMARK 500 2 LYS A 59 -137.65 66.70 REMARK 500 2 SER A 62 73.68 -150.14 REMARK 500 2 TRP A 66 -179.79 163.85 REMARK 500 2 GLN A 71 49.90 177.10 REMARK 500 2 ASP A 72 -153.95 55.36 REMARK 500 2 ILE A 74 76.25 46.99 REMARK 500 2 PRO A 76 22.61 -67.22 REMARK 500 2 ASN A 84 34.55 -144.75 REMARK 500 2 LEU A 88 90.13 -179.91 REMARK 500 2 ASP A 93 94.03 -43.42 REMARK 500 2 ASP A 96 88.27 -47.86 REMARK 500 2 VAL A 100 -30.18 -37.74 REMARK 500 2 ARG A 104 -26.72 -34.79 REMARK 500 REMARK 500 THIS ENTRY HAS 343 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 1 DBREF 1U81 A 18 181 UNP P84077 ARF1_HUMAN 17 180 SEQRES 1 A 164 MET ARG ILE LEU MET VAL GLY LEU ASP ALA ALA GLY LYS SEQRES 2 A 164 THR THR ILE LEU TYR LYS LEU LYS LEU GLY GLU ILE VAL SEQRES 3 A 164 THR THR ILE PRO THR ILE GLY PHE ASN VAL GLU THR VAL SEQRES 4 A 164 GLU TYR LYS ASN ILE SER PHE THR VAL TRP ASP VAL GLY SEQRES 5 A 164 GLY GLN ASP LYS ILE ARG PRO LEU TRP ARG HIS TYR PHE SEQRES 6 A 164 GLN ASN THR GLN GLY LEU ILE PHE VAL VAL ASP SER ASN SEQRES 7 A 164 ASP ARG GLU ARG VAL ASN GLU ALA ARG GLU GLU LEU MET SEQRES 8 A 164 ARG MET LEU ALA GLU ASP GLU LEU ARG ASP ALA VAL LEU SEQRES 9 A 164 LEU VAL PHE ALA ASN LYS GLN ASP LEU PRO ASN ALA MET SEQRES 10 A 164 ASN ALA ALA GLU ILE THR ASP LYS LEU GLY LEU HIS SER SEQRES 11 A 164 LEU ARG HIS ARG ASN TRP TYR ILE GLN ALA THR CYS ALA SEQRES 12 A 164 THR SER GLY ASP GLY LEU TYR GLU GLY LEU ASP TRP LEU SEQRES 13 A 164 SER ASN GLN LEU ARG ASN GLN LYS HET MG A 2 1 HET GDP A 1 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 HELIX 1 1 GLY A 29 LYS A 38 1 10 HELIX 2 2 PRO A 76 THR A 85 1 10 HELIX 3 3 ASN A 101 MET A 108 1 8 HELIX 4 4 ALA A 137 ASP A 141 5 5 HELIX 5 5 GLY A 165 LYS A 181 1 17 SHEET 1 A 4 MET A 22 GLY A 24 0 SHEET 2 A 4 ILE A 89 VAL A 91 1 O VAL A 91 N VAL A 23 SHEET 3 A 4 LEU A 121 ALA A 125 1 O PHE A 124 N PHE A 90 SHEET 4 A 4 TRP A 153 ALA A 157 1 O TYR A 154 N VAL A 123 SHEET 1 B 2 GLU A 54 TYR A 58 0 SHEET 2 B 2 ILE A 61 VAL A 65 -1 O PHE A 63 N VAL A 56 LINK MG MG A 2 OE2 GLU A 54 1555 1555 2.23 SITE 1 AC1 1 GLU A 54 SITE 1 AC2 9 LEU A 25 ALA A 27 ALA A 28 GLY A 29 SITE 2 AC2 9 LYS A 30 THR A 31 THR A 32 ASN A 126 SITE 3 AC2 9 LYS A 127 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1