HEADER ENDOCYTOSIS/EXOCYTOSIS 09-MAR-03 1UAD TITLE CRYSTAL STRUCTURE OF THE RALA-GPPNHP-SEC5 RAL-BINDING DOMAIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAL-A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 9-183; COMPND 5 SYNONYM: RALA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: EXOCYST COMPLEX COMPONENT SEC5; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: N-TERMINAL DOMAIN, SEC5 RAL-BINDING DOMAIN; COMPND 11 SYNONYM: RSEC5; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX2T; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 12 ORGANISM_COMMON: NORWAY RAT; SOURCE 13 ORGANISM_TAXID: 10116; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21-RIL; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGEX2T KEYWDS SMALL GTP-BINDING PROTEIN, IMMUNOGLOBLIN-LIKE FOLD, BETA-SANDWICH, KEYWDS 2 ENDOCYTOSIS-EXOCYTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.FUKAI,H.T.MATERN,R.H.SCHELLER,A.T.BRUNGER REVDAT 3 25-OCT-23 1UAD 1 REMARK LINK REVDAT 2 24-FEB-09 1UAD 1 VERSN REVDAT 1 15-JUL-03 1UAD 0 JRNL AUTH S.FUKAI,H.T.MATERN,J.R.JAGATH,R.H.SCHELLER,A.T.BRUNGER JRNL TITL STRUCTURAL BASIS OF THE INTERACTION BETWEEN RALA AND SEC5, A JRNL TITL 2 SUBUNIT OF THE SEC6/8 COMPLEX JRNL REF EMBO J. V. 22 3267 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 12839989 JRNL DOI 10.1093/EMBOJ/CDG329 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2588488.640 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 40357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4051 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5940 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 675 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4132 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.03000 REMARK 3 B22 (A**2) : 5.03000 REMARK 3 B33 (A**2) : -10.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.760 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.540 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.540 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.990 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.930 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 44.29 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GNP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GNP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000005614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40357 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 40.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CTQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, SODIUM ACETATE, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.70900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.70900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.33800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.70900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.70900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.33800 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 58.70900 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 58.70900 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 51.33800 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 58.70900 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 58.70900 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 51.33800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 9 REMARK 465 ASN A 10 REMARK 465 GLN B 9 REMARK 465 ASN B 10 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ARG C 3 REMARK 465 GLU C 96 REMARK 465 LYS C 97 REMARK 465 ILE C 98 REMARK 465 GLY C 99 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ARG D 3 REMARK 465 GLU D 96 REMARK 465 LYS D 97 REMARK 465 ILE D 98 REMARK 465 GLY D 99 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLN A 72 REMARK 475 GLU A 73 REMARK 475 ASP A 74 REMARK 475 TYR A 75 REMARK 475 ALA A 76 REMARK 475 GLU B 73 REMARK 475 ASP B 74 REMARK 475 TYR B 75 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 44 81.79 -152.39 REMARK 500 LYS A 47 -66.64 -102.18 REMARK 500 ALA A 48 116.76 -169.54 REMARK 500 ALA A 76 -74.24 -126.00 REMARK 500 LYS A 128 35.43 75.57 REMARK 500 LEU A 131 50.42 -103.63 REMARK 500 ASN A 163 7.44 58.46 REMARK 500 GLU B 41 81.77 -69.47 REMARK 500 LYS B 47 -68.31 -102.85 REMARK 500 ALA B 48 113.70 -167.87 REMARK 500 LYS B 128 34.27 74.96 REMARK 500 LEU B 131 49.72 -103.90 REMARK 500 ASN B 163 8.12 56.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 300 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 28 OG REMARK 620 2 THR A 46 OG1 79.1 REMARK 620 3 GNP A 200 O2B 91.3 167.1 REMARK 620 4 GNP A 200 O2G 168.1 89.0 100.5 REMARK 620 5 HOH A 348 O 81.9 87.3 82.9 97.1 REMARK 620 6 HOH A 352 O 91.7 88.7 100.3 88.5 173.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 300 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 28 OG REMARK 620 2 THR B 46 OG1 77.3 REMARK 620 3 GNP B1200 O2B 91.6 167.9 REMARK 620 4 GNP B1200 N3B 140.6 137.3 54.8 REMARK 620 5 GNP B1200 O2G 160.9 89.3 100.2 57.5 REMARK 620 6 HOH B1255 O 84.6 89.7 94.1 78.7 109.2 REMARK 620 7 HOH B1263 O 89.1 81.9 93.2 110.6 75.3 170.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 1200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C1Y RELATED DB: PDB REMARK 900 RELATED ID: 1HE8 RELATED DB: PDB REMARK 900 RELATED ID: 1K8R RELATED DB: PDB REMARK 900 RELATED ID: 1LFD RELATED DB: PDB DBREF 1UAD A 9 183 UNP P11233 RALA_HUMAN 9 183 DBREF 1UAD B 9 183 UNP P11233 RALA_HUMAN 9 183 DBREF 1UAD C 1 99 UNP O54921 SEC5_RAT 1 99 DBREF 1UAD D 1 99 UNP O54921 SEC5_RAT 1 99 SEQRES 1 A 175 GLN ASN SER LEU ALA LEU HIS LYS VAL ILE MET VAL GLY SEQRES 2 A 175 SER GLY GLY VAL GLY LYS SER ALA LEU THR LEU GLN PHE SEQRES 3 A 175 MET TYR ASP GLU PHE VAL GLU ASP TYR GLU PRO THR LYS SEQRES 4 A 175 ALA ASP SER TYR ARG LYS LYS VAL VAL LEU ASP GLY GLU SEQRES 5 A 175 GLU VAL GLN ILE ASP ILE LEU ASP THR ALA GLY GLN GLU SEQRES 6 A 175 ASP TYR ALA ALA ILE ARG ASP ASN TYR PHE ARG SER GLY SEQRES 7 A 175 GLU GLY PHE LEU CYS VAL PHE SER ILE THR GLU MET GLU SEQRES 8 A 175 SER PHE ALA ALA THR ALA ASP PHE ARG GLU GLN ILE LEU SEQRES 9 A 175 ARG VAL LYS GLU ASP GLU ASN VAL PRO PHE LEU LEU VAL SEQRES 10 A 175 GLY ASN LYS SER ASP LEU GLU ASP LYS ARG GLN VAL SER SEQRES 11 A 175 VAL GLU GLU ALA LYS ASN ARG ALA GLU GLN TRP ASN VAL SEQRES 12 A 175 ASN TYR VAL GLU THR SER ALA LYS THR ARG ALA ASN VAL SEQRES 13 A 175 ASP LYS VAL PHE PHE ASP LEU MET ARG GLU ILE ARG ALA SEQRES 14 A 175 ARG LYS MET GLU ASP SER SEQRES 1 B 175 GLN ASN SER LEU ALA LEU HIS LYS VAL ILE MET VAL GLY SEQRES 2 B 175 SER GLY GLY VAL GLY LYS SER ALA LEU THR LEU GLN PHE SEQRES 3 B 175 MET TYR ASP GLU PHE VAL GLU ASP TYR GLU PRO THR LYS SEQRES 4 B 175 ALA ASP SER TYR ARG LYS LYS VAL VAL LEU ASP GLY GLU SEQRES 5 B 175 GLU VAL GLN ILE ASP ILE LEU ASP THR ALA GLY GLN GLU SEQRES 6 B 175 ASP TYR ALA ALA ILE ARG ASP ASN TYR PHE ARG SER GLY SEQRES 7 B 175 GLU GLY PHE LEU CYS VAL PHE SER ILE THR GLU MET GLU SEQRES 8 B 175 SER PHE ALA ALA THR ALA ASP PHE ARG GLU GLN ILE LEU SEQRES 9 B 175 ARG VAL LYS GLU ASP GLU ASN VAL PRO PHE LEU LEU VAL SEQRES 10 B 175 GLY ASN LYS SER ASP LEU GLU ASP LYS ARG GLN VAL SER SEQRES 11 B 175 VAL GLU GLU ALA LYS ASN ARG ALA GLU GLN TRP ASN VAL SEQRES 12 B 175 ASN TYR VAL GLU THR SER ALA LYS THR ARG ALA ASN VAL SEQRES 13 B 175 ASP LYS VAL PHE PHE ASP LEU MET ARG GLU ILE ARG ALA SEQRES 14 B 175 ARG LYS MET GLU ASP SER SEQRES 1 C 99 MET SER ARG SER ARG GLN PRO PRO LEU VAL THR GLY ILE SEQRES 2 C 99 SER PRO ASN GLU GLY ILE PRO TRP THR LYS VAL THR ILE SEQRES 3 C 99 ARG GLY GLU ASN LEU GLY THR GLY PRO THR ASP LEU ILE SEQRES 4 C 99 GLY LEU THR ILE CYS GLY HIS ASN CYS LEU LEU THR ALA SEQRES 5 C 99 GLU TRP MET SER ALA SER LYS ILE VAL CYS ARG VAL GLY SEQRES 6 C 99 GLN ALA LYS ASN ASP LYS GLY ASP ILE ILE VAL THR THR SEQRES 7 C 99 LYS SER GLY GLY ARG GLY THR SER THR VAL SER PHE LYS SEQRES 8 C 99 LEU LEU LYS PRO GLU LYS ILE GLY SEQRES 1 D 99 MET SER ARG SER ARG GLN PRO PRO LEU VAL THR GLY ILE SEQRES 2 D 99 SER PRO ASN GLU GLY ILE PRO TRP THR LYS VAL THR ILE SEQRES 3 D 99 ARG GLY GLU ASN LEU GLY THR GLY PRO THR ASP LEU ILE SEQRES 4 D 99 GLY LEU THR ILE CYS GLY HIS ASN CYS LEU LEU THR ALA SEQRES 5 D 99 GLU TRP MET SER ALA SER LYS ILE VAL CYS ARG VAL GLY SEQRES 6 D 99 GLN ALA LYS ASN ASP LYS GLY ASP ILE ILE VAL THR THR SEQRES 7 D 99 LYS SER GLY GLY ARG GLY THR SER THR VAL SER PHE LYS SEQRES 8 D 99 LEU LEU LYS PRO GLU LYS ILE GLY HET MG A 300 1 HET GNP A 200 32 HET MG B 300 1 HET GNP B1200 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 5 MG 2(MG 2+) FORMUL 6 GNP 2(C10 H17 N6 O13 P3) FORMUL 9 HOH *222(H2 O) HELIX 1 1 GLY A 26 ASP A 37 1 12 HELIX 2 2 ALA A 76 GLY A 86 1 11 HELIX 3 3 GLU A 97 GLU A 116 1 20 HELIX 4 4 LEU A 131 ARG A 135 5 5 HELIX 5 5 SER A 138 ASN A 150 1 13 HELIX 6 6 ASN A 163 ASP A 182 1 20 HELIX 7 7 GLY B 26 ASP B 37 1 12 HELIX 8 8 ALA B 76 GLY B 86 1 11 HELIX 9 9 GLU B 97 GLU B 116 1 20 HELIX 10 10 LYS B 128 ARG B 135 5 8 HELIX 11 11 SER B 138 ASN B 150 1 13 HELIX 12 12 ASN B 163 MET B 180 1 18 HELIX 13 13 GLY C 34 THR C 36 5 3 HELIX 14 14 LEU C 49 ALA C 52 5 4 HELIX 15 15 GLY D 34 THR D 36 5 3 HELIX 16 16 LEU D 49 ALA D 52 5 4 SHEET 1 A10 ASN A 152 GLU A 155 0 SHEET 2 A10 PHE A 122 ASN A 127 1 N LEU A 124 O ASN A 152 SHEET 3 A10 GLY A 88 SER A 94 1 N CYS A 91 O VAL A 125 SHEET 4 A10 LEU A 14 VAL A 20 1 N VAL A 20 O VAL A 92 SHEET 5 A10 GLU A 60 THR A 69 1 O ASP A 65 N VAL A 17 SHEET 6 A10 ALA A 48 LEU A 57 -1 N TYR A 51 O ILE A 66 SHEET 7 A10 LEU C 9 SER C 14 -1 O ILE C 13 N SER A 50 SHEET 8 A10 LYS C 23 GLU C 29 -1 O THR C 25 N SER C 14 SHEET 9 A10 LYS C 59 ARG C 63 -1 O ILE C 60 N ILE C 26 SHEET 10 A10 GLU C 53 SER C 56 -1 N GLU C 53 O VAL C 61 SHEET 1 B 8 ASN A 152 GLU A 155 0 SHEET 2 B 8 PHE A 122 ASN A 127 1 N LEU A 124 O ASN A 152 SHEET 3 B 8 GLY A 88 SER A 94 1 N CYS A 91 O VAL A 125 SHEET 4 B 8 LEU A 14 VAL A 20 1 N VAL A 20 O VAL A 92 SHEET 5 B 8 GLU A 60 THR A 69 1 O ASP A 65 N VAL A 17 SHEET 6 B 8 ALA A 48 LEU A 57 -1 N TYR A 51 O ILE A 66 SHEET 7 B 8 LEU C 9 SER C 14 -1 O ILE C 13 N SER A 50 SHEET 8 B 8 THR C 85 SER C 86 1 O THR C 85 N VAL C 10 SHEET 1 C10 ASN B 152 GLU B 155 0 SHEET 2 C10 PHE B 122 ASN B 127 1 N LEU B 124 O ASN B 152 SHEET 3 C10 GLY B 88 SER B 94 1 N CYS B 91 O VAL B 125 SHEET 4 C10 LEU B 14 VAL B 20 1 N VAL B 20 O VAL B 92 SHEET 5 C10 GLU B 60 THR B 69 1 O ASP B 65 N VAL B 17 SHEET 6 C10 ALA B 48 LEU B 57 -1 N LEU B 57 O GLU B 60 SHEET 7 C10 LEU D 9 SER D 14 -1 O ILE D 13 N SER B 50 SHEET 8 C10 LYS D 23 GLU D 29 -1 O THR D 25 N SER D 14 SHEET 9 C10 LYS D 59 ARG D 63 -1 O ILE D 60 N ILE D 26 SHEET 10 C10 GLU D 53 SER D 56 -1 N GLU D 53 O VAL D 61 SHEET 1 D 8 ASN B 152 GLU B 155 0 SHEET 2 D 8 PHE B 122 ASN B 127 1 N LEU B 124 O ASN B 152 SHEET 3 D 8 GLY B 88 SER B 94 1 N CYS B 91 O VAL B 125 SHEET 4 D 8 LEU B 14 VAL B 20 1 N VAL B 20 O VAL B 92 SHEET 5 D 8 GLU B 60 THR B 69 1 O ASP B 65 N VAL B 17 SHEET 6 D 8 ALA B 48 LEU B 57 -1 N LEU B 57 O GLU B 60 SHEET 7 D 8 LEU D 9 SER D 14 -1 O ILE D 13 N SER B 50 SHEET 8 D 8 THR D 85 SER D 86 1 O THR D 85 N VAL D 10 SHEET 1 E 2 GLU C 17 GLY C 18 0 SHEET 2 E 2 LYS C 91 LEU C 92 1 O LYS C 91 N GLY C 18 SHEET 1 F 4 HIS C 46 ASN C 47 0 SHEET 2 F 4 LEU C 38 ILE C 43 -1 N ILE C 43 O HIS C 46 SHEET 3 F 4 ILE C 74 THR C 78 -1 O ILE C 75 N THR C 42 SHEET 4 F 4 GLY C 82 ARG C 83 -1 O GLY C 82 N THR C 78 SHEET 1 G 2 GLU D 17 GLY D 18 0 SHEET 2 G 2 LYS D 91 LEU D 92 1 O LYS D 91 N GLY D 18 SHEET 1 H 4 HIS D 46 ASN D 47 0 SHEET 2 H 4 LEU D 38 ILE D 43 -1 N ILE D 43 O HIS D 46 SHEET 3 H 4 ILE D 74 THR D 78 -1 O THR D 77 N GLY D 40 SHEET 4 H 4 GLY D 82 ARG D 83 -1 O GLY D 82 N THR D 78 LINK OG SER A 28 MG MG A 300 1555 1555 2.37 LINK OG1 THR A 46 MG MG A 300 1555 1555 2.26 LINK O2B GNP A 200 MG MG A 300 1555 1555 2.12 LINK O2G GNP A 200 MG MG A 300 1555 1555 2.28 LINK MG MG A 300 O HOH A 348 1555 1555 2.45 LINK MG MG A 300 O HOH A 352 1555 1555 2.20 LINK OG SER B 28 MG MG B 300 1555 1555 2.31 LINK OG1 THR B 46 MG MG B 300 1555 1555 2.39 LINK MG MG B 300 O2B GNP B1200 1555 1555 2.22 LINK MG MG B 300 N3B GNP B1200 1555 1555 3.11 LINK MG MG B 300 O2G GNP B1200 1555 1555 2.28 LINK MG MG B 300 O HOH B1255 1555 1555 2.41 LINK MG MG B 300 O HOH B1263 1555 1555 2.43 CISPEP 1 SER C 14 PRO C 15 0 -0.14 CISPEP 2 SER D 14 PRO D 15 0 -0.25 SITE 1 AC1 5 SER A 28 THR A 46 GNP A 200 HOH A 348 SITE 2 AC1 5 HOH A 352 SITE 1 AC2 5 SER B 28 THR B 46 GNP B1200 HOH B1255 SITE 2 AC2 5 HOH B1263 SITE 1 AC3 23 GLY A 23 GLY A 24 VAL A 25 GLY A 26 SITE 2 AC3 23 LYS A 27 SER A 28 ALA A 29 PHE A 39 SITE 3 AC3 23 VAL A 40 GLU A 41 ASP A 42 PRO A 45 SITE 4 AC3 23 THR A 46 GLY A 71 ASN A 127 LYS A 128 SITE 5 AC3 23 ASP A 130 SER A 157 ALA A 158 MG A 300 SITE 6 AC3 23 HOH A 332 HOH A 335 HOH A 348 SITE 1 AC4 26 GLY B 23 GLY B 24 VAL B 25 GLY B 26 SITE 2 AC4 26 LYS B 27 SER B 28 ALA B 29 PHE B 39 SITE 3 AC4 26 VAL B 40 GLU B 41 ASP B 42 TYR B 43 SITE 4 AC4 26 PRO B 45 THR B 46 GLY B 71 ASN B 127 SITE 5 AC4 26 LYS B 128 ASP B 130 LEU B 131 SER B 157 SITE 6 AC4 26 ALA B 158 MG B 300 HOH B1246 HOH B1255 SITE 7 AC4 26 HOH B1262 HOH B1263 CRYST1 117.418 117.418 102.676 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008517 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009739 0.00000