HEADER RNA BINDING PROTEIN 24-MAR-03 1UAW TITLE SOLUTION STRUCTURE OF THE N-TERMINAL RNA-BINDING DOMAIN OF MOUSE TITLE 2 MUSASHI1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOUSE-MUSASHI-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL RNA-BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 TISSUE: NEURAL STEM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS RNP-TYPE STRUCTURE, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR Y.MIYANOIRI,H.KOBAYASHI,M.WATANABE,T.IKEDA,T.NAGATA,H.OKANO,S.UESUGI, AUTHOR 2 M.KATAHIRA REVDAT 5 27-DEC-23 1UAW 1 REMARK REVDAT 4 02-MAR-22 1UAW 1 REMARK REVDAT 3 24-FEB-09 1UAW 1 VERSN REVDAT 2 26-APR-05 1UAW 1 JRNL REVDAT 1 24-MAR-04 1UAW 0 JRNL AUTH Y.MIYANOIRI,H.KOBAYASHI,T.IMAI,M.WATANABE,T.NAGATA,S.UESUGI, JRNL AUTH 2 H.OKANO,M.KATAHIRA JRNL TITL ORIGIN OF HIGHER AFFINITY TO RNA OF THE N-TERMINAL JRNL TITL 2 RNA-BINDING DOMAIN THAN THAT OF THE C-TERMINAL ONE OF A JRNL TITL 3 MOUSE NEURAL PROTEIN, MUSASHI1, AS REVEALED BY COMPARISON OF JRNL TITL 4 THEIR STRUCTURES, MODES OF INTERACTION, SURFACE JRNL TITL 5 ELECTROSTATIC POTENTIALS, AND BACKBONE DYNAMICS JRNL REF J.BIOL.CHEM. V. 278 41309 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12907678 JRNL DOI 10.1074/JBC.M306210200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.NAGATA,R.KANNO,Y.KURIHARA,S.UESUGI,T.IMAI,S.SAKAKIBARA, REMARK 1 AUTH 2 H.OKANO,M.KATAHIRA REMARK 1 TITL STRUCTURE, BACKBONE DYNAMICS AND INTERACTIONS WITH RNA OF REMARK 1 TITL 2 THE C-TERMINAL RNA-BINDING DOMAIN OF A MOUSE NEURAL REMARK 1 TITL 3 RNA-BINDING PROTEIN, MUSASHI1. REMARK 1 REF J.MOL.BIOL. V. 287 315 1999 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 10080895 REMARK 1 DOI 10.1006/JMBI.1999.2596 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.KURIHARA,T.NAGATA,T.IMAI,A.HIWATASHI,M.HORIUCHI, REMARK 1 AUTH 2 S.SAKAKIBARA,M.KATAHIRA,H.OKANO,S.UESUGI REMARK 1 TITL STRUCTURAL PROPERTIES AND RNA-BINDING ACTIVITIES OF TWO RNA REMARK 1 TITL 2 RECOGNITION MOTIFS OF A MOUSE NEURAL RNA-BINDING PROTEIN, REMARK 1 TITL 3 MOUSE-MUSASHI-1. REMARK 1 REF GENE V. 186 21 1997 REMARK 1 REFN ISSN 0378-1119 REMARK 1 PMID 9047340 REMARK 1 DOI 10.1016/S0378-1119(96)00673-7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UAW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000005631. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.0MM REMARK 210 PRESSURE : 1.0ATM REMARK 210 SAMPLE CONTENTS : 2.0MM 15N LABELED MUSASHI1 RBD1, REMARK 210 20MM SODIUM PHOSPHATE, 1.0MM REMARK 210 SODIUM AZIDE, 10MM DEUTERATED REMARK 210 DTT, SMALL AMOUNTS OF DSS; 2.0MM REMARK 210 MUSASHI1 RBD1, 20MM SODIUM REMARK 210 PHOSPHATE, 1.0MM SODIUM AZIDE, REMARK 210 10MM DEUTERATED DTT, SMALL REMARK 210 AMOUNTS OF DSS; 2.0MM MUSASHI1 REMARK 210 RBD1, 20MM SODIUM PHOSPHATE, REMARK 210 1.0MM SODIUM AZIDE, 10MM REMARK 210 DEUTERATED DTT, SMALL AMOUNTS OF REMARK 210 DSS REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; HNHA; 2D REMARK 210 NOESY; 2D TOCSY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CAPP/PIPP/STAPP 4.2.5, XWINNMR REMARK 210 2.6 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 103 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING 2D HOMONUCLEAR AND 3D REMARK 210 15N-EDITED HETERONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 78 H SER A 81 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 28 173.95 -46.37 REMARK 500 1 GLN A 30 11.79 -151.57 REMARK 500 1 GLN A 33 -73.82 -88.47 REMARK 500 1 ASP A 54 81.91 62.71 REMARK 500 1 THR A 57 -148.50 -142.04 REMARK 500 1 ARG A 59 -161.85 -77.95 REMARK 500 1 SER A 60 -173.33 -52.52 REMARK 500 1 ARG A 61 28.12 -150.17 REMARK 500 1 THR A 67 53.94 -90.39 REMARK 500 1 MET A 69 117.18 -174.62 REMARK 500 1 GLN A 71 -71.17 -53.39 REMARK 500 1 ASP A 75 -82.67 -68.24 REMARK 500 1 SER A 81 -18.64 -49.14 REMARK 500 1 HIS A 83 -80.94 56.86 REMARK 500 1 GLU A 84 123.18 54.41 REMARK 500 1 LEU A 85 -88.55 -154.29 REMARK 500 1 ILE A 90 -173.96 -52.58 REMARK 500 1 ALA A 95 -154.72 42.34 REMARK 500 2 SER A 28 173.57 -56.58 REMARK 500 2 GLN A 33 -74.76 -90.16 REMARK 500 2 GLU A 48 151.89 179.95 REMARK 500 2 ARG A 53 -47.97 -150.06 REMARK 500 2 PRO A 55 56.81 -64.62 REMARK 500 2 LYS A 58 -10.68 75.24 REMARK 500 2 SER A 60 -152.40 -62.80 REMARK 500 2 ARG A 61 -42.96 -134.33 REMARK 500 2 THR A 67 59.20 -119.12 REMARK 500 2 PHE A 68 -161.84 -70.39 REMARK 500 2 MET A 69 -158.30 -89.01 REMARK 500 2 ASP A 70 -139.74 -122.03 REMARK 500 2 GLN A 71 -148.80 62.19 REMARK 500 2 HIS A 83 43.99 31.69 REMARK 500 2 LEU A 85 -83.38 -155.00 REMARK 500 2 THR A 89 64.97 -105.82 REMARK 500 2 ILE A 90 -176.18 -53.00 REMARK 500 2 ALA A 95 -156.16 -134.85 REMARK 500 3 SER A 28 170.70 -45.50 REMARK 500 3 GLN A 33 -73.10 -80.26 REMARK 500 3 GLU A 45 122.76 -37.87 REMARK 500 3 GLU A 48 145.16 -178.75 REMARK 500 3 ARG A 53 -160.60 -124.95 REMARK 500 3 ASP A 54 -58.65 175.39 REMARK 500 3 PRO A 55 -152.16 -57.85 REMARK 500 3 LEU A 56 -69.46 -93.98 REMARK 500 3 THR A 57 -30.82 179.54 REMARK 500 3 ARG A 59 -155.50 -59.60 REMARK 500 3 SER A 60 -111.91 -74.35 REMARK 500 3 ARG A 61 -42.30 -136.72 REMARK 500 3 ASP A 70 -159.99 -150.04 REMARK 500 3 GLN A 71 -72.36 -80.79 REMARK 500 REMARK 500 THIS ENTRY HAS 250 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 37 0.24 SIDE CHAIN REMARK 500 1 ARG A 53 0.27 SIDE CHAIN REMARK 500 1 ARG A 59 0.24 SIDE CHAIN REMARK 500 1 ARG A 82 0.18 SIDE CHAIN REMARK 500 2 ARG A 37 0.27 SIDE CHAIN REMARK 500 2 ARG A 53 0.27 SIDE CHAIN REMARK 500 2 ARG A 59 0.32 SIDE CHAIN REMARK 500 2 ARG A 61 0.21 SIDE CHAIN REMARK 500 3 ARG A 37 0.31 SIDE CHAIN REMARK 500 3 ARG A 53 0.15 SIDE CHAIN REMARK 500 3 ARG A 59 0.25 SIDE CHAIN REMARK 500 3 ARG A 61 0.29 SIDE CHAIN REMARK 500 3 ARG A 82 0.29 SIDE CHAIN REMARK 500 4 ARG A 37 0.27 SIDE CHAIN REMARK 500 4 ARG A 53 0.13 SIDE CHAIN REMARK 500 4 ARG A 59 0.22 SIDE CHAIN REMARK 500 4 ARG A 61 0.24 SIDE CHAIN REMARK 500 4 ARG A 82 0.19 SIDE CHAIN REMARK 500 5 ARG A 37 0.21 SIDE CHAIN REMARK 500 5 ARG A 53 0.22 SIDE CHAIN REMARK 500 5 ARG A 59 0.31 SIDE CHAIN REMARK 500 5 ARG A 61 0.26 SIDE CHAIN REMARK 500 6 ARG A 37 0.25 SIDE CHAIN REMARK 500 6 ARG A 53 0.20 SIDE CHAIN REMARK 500 6 ARG A 59 0.29 SIDE CHAIN REMARK 500 6 ARG A 61 0.32 SIDE CHAIN REMARK 500 6 ARG A 82 0.15 SIDE CHAIN REMARK 500 7 ARG A 37 0.25 SIDE CHAIN REMARK 500 7 ARG A 53 0.31 SIDE CHAIN REMARK 500 7 ARG A 59 0.32 SIDE CHAIN REMARK 500 7 ARG A 61 0.30 SIDE CHAIN REMARK 500 7 ARG A 82 0.28 SIDE CHAIN REMARK 500 8 ARG A 37 0.24 SIDE CHAIN REMARK 500 8 ARG A 53 0.28 SIDE CHAIN REMARK 500 8 ARG A 59 0.27 SIDE CHAIN REMARK 500 8 ARG A 61 0.20 SIDE CHAIN REMARK 500 8 ARG A 82 0.32 SIDE CHAIN REMARK 500 9 ARG A 37 0.22 SIDE CHAIN REMARK 500 9 ARG A 53 0.30 SIDE CHAIN REMARK 500 9 ARG A 59 0.32 SIDE CHAIN REMARK 500 9 ARG A 61 0.21 SIDE CHAIN REMARK 500 9 ARG A 82 0.26 SIDE CHAIN REMARK 500 10 ARG A 37 0.28 SIDE CHAIN REMARK 500 10 ARG A 59 0.27 SIDE CHAIN REMARK 500 10 ARG A 61 0.24 SIDE CHAIN REMARK 500 10 ARG A 82 0.27 SIDE CHAIN REMARK 500 11 ARG A 37 0.11 SIDE CHAIN REMARK 500 11 ARG A 53 0.09 SIDE CHAIN REMARK 500 11 ARG A 59 0.21 SIDE CHAIN REMARK 500 11 ARG A 61 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 70 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MSS RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE OF THE C-TERMINAL DOMAIN OF MOUSE REMARK 900 MUSASHI1 REMARK 900 RELATED ID: 2MST RELATED DB: PDB REMARK 900 20 ENSEMBLE STRUCTURES OF THE C-TERMINAL DOMAIN OF MOUSE MUSASHI1 DBREF 1UAW A 20 96 UNP Q61474 MSI1H_MOUSE 20 96 SEQRES 1 A 77 CYS LYS MET PHE ILE GLY GLY LEU SER TRP GLN THR THR SEQRES 2 A 77 GLN GLU GLY LEU ARG GLU TYR PHE GLY GLN PHE GLY GLU SEQRES 3 A 77 VAL LYS GLU CYS LEU VAL MET ARG ASP PRO LEU THR LYS SEQRES 4 A 77 ARG SER ARG GLY PHE GLY PHE VAL THR PHE MET ASP GLN SEQRES 5 A 77 ALA GLY VAL ASP LYS VAL LEU ALA GLN SER ARG HIS GLU SEQRES 6 A 77 LEU ASP SER LYS THR ILE ASP PRO LYS VAL ALA PHE HELIX 1 1 GLN A 33 PHE A 43 1 11 HELIX 2 2 ALA A 72 ALA A 79 1 8 SHEET 1 A 4 VAL A 46 MET A 52 0 SHEET 2 A 4 PHE A 63 PHE A 68 -1 N THR A 67 O GLU A 48 SHEET 3 A 4 LYS A 21 GLY A 25 -1 N ILE A 24 O GLY A 64 SHEET 4 A 4 ASP A 91 ALA A 95 -1 O LYS A 93 N PHE A 23 SHEET 1 B 2 LYS A 88 THR A 89 0 SHEET 2 B 2 GLU A 84 LEU A 85 -1 N LEU A 85 O LYS A 88 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1