HEADER TRANSFERASE 14-OCT-96 1UBW TITLE STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FPS; COMPND 5 EC: 2.5.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: COMPLEXED WITH GERANYL DIPHOSPHATE AND MAGNESIUM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 ORGAN: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PUC KEYWDS TRANSFERASE, ISOPRENE BIOSYNTHESIS, CHOLESTEROL BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR L.C.TARSHIS,P.PROTEAU,C.D.POULTER,J.C.SACCHETTINI REVDAT 4 14-FEB-24 1UBW 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1UBW 1 VERSN REVDAT 2 24-FEB-09 1UBW 1 VERSN REVDAT 1 12-MAR-97 1UBW 0 JRNL AUTH L.C.TARSHIS,P.J.PROTEAU,B.A.KELLOGG,J.C.SACCHETTINI, JRNL AUTH 2 C.D.POULTER JRNL TITL REGULATION OF PRODUCT CHAIN LENGTH BY ISOPRENYL DIPHOSPHATE JRNL TITL 2 SYNTHASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 93 15018 1996 JRNL REFN ISSN 0027-8424 JRNL PMID 8986756 JRNL DOI 10.1073/PNAS.93.26.15018 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.C.TARSHIS,M.YAN,C.D.POULTER,J.C.SACCHETTINI REMARK 1 TITL CRYSTAL STRUCTURE OF RECOMBINANT FARNESYL DIPHOSPHATE REMARK 1 TITL 2 SYNTHASE AT 2.6-A RESOLUTION REMARK 1 REF BIOCHEMISTRY V. 33 10871 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 17007 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1920 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.017 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.374 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-95 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET X100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SADIE REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19489 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 44.35000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 137.45000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.72500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.35000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 206.17500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 206.17500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.35000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.72500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 44.35000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 137.45000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.35000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 137.45000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.35000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 206.17500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 68.72500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.35000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 68.72500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 206.17500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.35000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.35000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 137.45000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 88.70000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 LYS A 3 REMARK 465 PHE A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 VAL A 7 REMARK 465 ASN A 8 REMARK 465 ALA A 9 REMARK 465 LYS A 10 REMARK 465 PHE A 11 REMARK 465 GLN A 12 REMARK 465 GLN A 13 REMARK 465 PRO A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 ARG A 17 REMARK 465 ASN A 18 REMARK 465 LEU A 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 36 C - N - CD ANGL. DEV. = -19.1 DEGREES REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 PRO A 50 C - N - CD ANGL. DEV. = -13.4 DEGREES REMARK 500 ASN A 66 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 GLY A 69 N - CA - C ANGL. DEV. = 15.7 DEGREES REMARK 500 LEU A 85 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ASP A 92 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 LEU A 124 CB - CG - CD1 ANGL. DEV. = -10.6 DEGREES REMARK 500 CYS A 161 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 LEU A 171 CA - CB - CG ANGL. DEV. = 18.9 DEGREES REMARK 500 LEU A 175 CB - CG - CD1 ANGL. DEV. = 14.5 DEGREES REMARK 500 LEU A 189 CA - CB - CG ANGL. DEV. = -15.1 DEGREES REMARK 500 PRO A 294 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 ILE A 362 CG1 - CB - CG2 ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 34.52 -76.02 REMARK 500 VAL A 22 -55.83 -137.40 REMARK 500 PHE A 35 -37.33 -37.98 REMARK 500 CYS A 72 17.23 81.60 REMARK 500 LYS A 91 21.50 -76.86 REMARK 500 ARG A 127 65.10 34.24 REMARK 500 VAL A 138 -90.38 -90.18 REMARK 500 CYS A 161 -0.81 -144.30 REMARK 500 GLN A 163 62.73 -115.70 REMARK 500 VAL A 194 55.44 -92.38 REMARK 500 SER A 195 38.83 171.43 REMARK 500 LYS A 196 106.65 174.00 REMARK 500 ASP A 198 101.43 15.57 REMARK 500 THR A 215 -36.61 -140.47 REMARK 500 CYS A 262 -81.34 -104.27 REMARK 500 PHE A 263 19.25 -68.91 REMARK 500 ASP A 265 -50.10 -162.66 REMARK 500 PRO A 266 87.03 -49.71 REMARK 500 ALA A 267 11.52 81.15 REMARK 500 THR A 269 62.11 -17.85 REMARK 500 VAL A 272 56.02 -107.37 REMARK 500 ASP A 275 36.30 -154.23 REMARK 500 ASN A 279 98.28 -58.40 REMARK 500 LEU A 289 -85.63 -43.63 REMARK 500 GLN A 290 -23.87 -32.51 REMARK 500 PRO A 294 -19.93 -35.06 REMARK 500 ARG A 297 -8.15 -52.60 REMARK 500 ARG A 338 -17.35 -47.51 REMARK 500 SER A 347 38.03 -98.92 REMARK 500 ILE A 362 -74.64 -108.19 REMARK 500 LYS A 364 -68.04 -129.89 REMARK 500 ARG A 365 167.24 83.41 REMARK 500 GLN A 366 78.38 -152.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 117 OD2 REMARK 620 2 ASP A 121 OD2 88.6 REMARK 620 3 GPP A 401 O3A 87.9 133.4 REMARK 620 4 GPP A 401 O1A 78.2 75.4 58.3 REMARK 620 5 GPP A 401 O2B 79.1 167.0 50.9 105.5 REMARK 620 6 HOH A 463 O 68.0 85.9 134.3 141.6 85.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 117 OD1 REMARK 620 2 ASP A 121 OD2 75.9 REMARK 620 3 GPP A 401 O1A 74.8 84.9 REMARK 620 4 HOH A 490 O 171.6 108.1 112.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GPP A 401 DBREF 1UBW A 1 367 UNP P08836 FPPS_CHICK 1 367 SEQADV 1UBW ALA A 112 UNP P08836 PHE 112 CONFLICT SEQADV 1UBW SER A 113 UNP P08836 PHE 113 CONFLICT SEQADV 1UBW ALA A 271 UNP P08836 LYS 271 CONFLICT SEQRES 1 A 367 MET HIS LYS PHE THR GLY VAL ASN ALA LYS PHE GLN GLN SEQRES 2 A 367 PRO ALA LEU ARG ASN LEU SER PRO VAL VAL VAL GLU ARG SEQRES 3 A 367 GLU ARG GLU GLU PHE VAL GLY PHE PHE PRO GLN ILE VAL SEQRES 4 A 367 ARG ASP LEU THR GLU ASP GLY ILE GLY HIS PRO GLU VAL SEQRES 5 A 367 GLY ASP ALA VAL ALA ARG LEU LYS GLU VAL LEU GLN TYR SEQRES 6 A 367 ASN ALA PRO GLY GLY LYS CYS ASN ARG GLY LEU THR VAL SEQRES 7 A 367 VAL ALA ALA TYR ARG GLU LEU SER GLY PRO GLY GLN LYS SEQRES 8 A 367 ASP ALA GLU SER LEU ARG CYS ALA LEU ALA VAL GLY TRP SEQRES 9 A 367 CYS ILE GLU LEU PHE GLN ALA ALA SER LEU VAL ALA ASP SEQRES 10 A 367 ASP ILE MET ASP GLN SER LEU THR ARG ARG GLY GLN LEU SEQRES 11 A 367 CYS TRP TYR LYS LYS GLU GLY VAL GLY LEU ASP ALA ILE SEQRES 12 A 367 ASN ASP SER PHE LEU LEU GLU SER SER VAL TYR ARG VAL SEQRES 13 A 367 LEU LYS LYS TYR CYS ARG GLN ARG PRO TYR TYR VAL HIS SEQRES 14 A 367 LEU LEU GLU LEU PHE LEU GLN THR ALA TYR GLN THR GLU SEQRES 15 A 367 LEU GLY GLN MET LEU ASP LEU ILE THR ALA PRO VAL SER SEQRES 16 A 367 LYS VAL ASP LEU SER HIS PHE SER GLU GLU ARG TYR LYS SEQRES 17 A 367 ALA ILE VAL LYS TYR LYS THR ALA PHE TYR SER PHE TYR SEQRES 18 A 367 LEU PRO VAL ALA ALA ALA MET TYR MET VAL GLY ILE ASP SEQRES 19 A 367 SER LYS GLU GLU HIS GLU ASN ALA LYS ALA ILE LEU LEU SEQRES 20 A 367 GLU MET GLY GLU TYR PHE GLN ILE GLN ASP ASP TYR LEU SEQRES 21 A 367 ASP CYS PHE GLY ASP PRO ALA LEU THR GLY ALA VAL GLY SEQRES 22 A 367 THR ASP ILE GLN ASP ASN LYS CYS SER TRP LEU VAL VAL SEQRES 23 A 367 GLN CYS LEU GLN ARG VAL THR PRO GLU GLN ARG GLN LEU SEQRES 24 A 367 LEU GLU ASP ASN TYR GLY ARG LYS GLU PRO GLU LYS VAL SEQRES 25 A 367 ALA LYS VAL LYS GLU LEU TYR GLU ALA VAL GLY MET ARG SEQRES 26 A 367 ALA ALA PHE GLN GLN TYR GLU GLU SER SER TYR ARG ARG SEQRES 27 A 367 LEU GLN GLU LEU ILE GLU LYS HIS SER ASN ARG LEU PRO SEQRES 28 A 367 LYS GLU ILE PHE LEU GLY LEU ALA GLN LYS ILE TYR LYS SEQRES 29 A 367 ARG GLN LYS HET MG A 402 1 HET MG A 403 1 HET GPP A 401 19 HETNAM MG MAGNESIUM ION HETNAM GPP GERANYL DIPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 4 GPP C10 H20 O7 P2 FORMUL 5 HOH *81(H2 O) HELIX 1 1 VAL A 23 THR A 43 1 21 HELIX 2 2 GLY A 46 GLY A 48 5 3 HELIX 3 3 GLY A 53 ASN A 66 1 14 HELIX 4 4 ASN A 73 LEU A 85 1 13 HELIX 5 5 ALA A 93 ASP A 121 1 29 HELIX 6 6 GLY A 139 CYS A 161 5 23 HELIX 7 7 TYR A 167 THR A 191 1 25 HELIX 8 8 GLU A 204 LYS A 214 1 11 HELIX 9 9 ALA A 216 SER A 219 1 4 HELIX 10 10 TYR A 221 VAL A 231 1 11 HELIX 11 11 LYS A 236 PHE A 263 1 28 HELIX 12 12 TRP A 283 ARG A 291 1 9 HELIX 13 13 GLN A 296 ASN A 303 1 8 HELIX 14 14 PRO A 309 VAL A 322 1 14 HELIX 15 15 MET A 324 HIS A 346 1 23 HELIX 16 16 LYS A 352 LYS A 361 1 10 SHEET 1 A 2 THR A 125 ARG A 126 0 SHEET 2 A 2 GLN A 129 LEU A 130 -1 N GLN A 129 O ARG A 126 LINK OD2 ASP A 117 MG MG A 402 1555 1555 2.02 LINK OD1 ASP A 117 MG MG A 403 1555 1555 2.32 LINK OD2 ASP A 121 MG MG A 402 1555 1555 2.23 LINK OD2 ASP A 121 MG MG A 403 1555 1555 2.66 LINK O3A GPP A 401 MG MG A 402 1555 1555 2.22 LINK O1A GPP A 401 MG MG A 402 1555 1555 2.91 LINK O2B GPP A 401 MG MG A 402 1555 1555 2.80 LINK O1A GPP A 401 MG MG A 403 1555 1555 2.01 LINK MG MG A 402 O HOH A 463 1555 1555 2.49 LINK MG MG A 403 O HOH A 490 1555 1555 2.88 SITE 1 AC1 4 ASP A 117 ASP A 121 GPP A 401 HOH A 463 SITE 1 AC2 5 ASP A 117 ASP A 121 ASP A 188 GPP A 401 SITE 2 AC2 5 HOH A 490 SITE 1 AC3 13 SER A 113 ASP A 117 ASP A 121 ARG A 126 SITE 2 AC3 13 ASN A 144 GLU A 182 GLN A 185 ASP A 188 SITE 3 AC3 13 LYS A 214 LYS A 280 MG A 402 MG A 403 SITE 4 AC3 13 HOH A 456 CRYST1 88.700 88.700 274.900 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011274 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011274 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003638 0.00000