HEADER CHAPERONE 24-APR-03 1UD0 TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL 10-KDA SUBDOMAIN OF HSC70 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 70 KDA HEAT-SHOCK-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: C-TERMINAL SUBDOMAIN; COMPND 5 SYNONYM: HSC70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 CELLULAR_LOCATION: CYTOPLASM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS HSC70, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR C.C.CHOU,F.FOROUHAR,Y.H.YEH,C.WANG,C.D.HSIAO REVDAT 5 13-NOV-24 1UD0 1 REMARK REVDAT 4 27-DEC-23 1UD0 1 REMARK SEQADV LINK REVDAT 3 16-NOV-11 1UD0 1 VERSN HETATM REVDAT 2 24-FEB-09 1UD0 1 VERSN REVDAT 1 11-MAY-04 1UD0 0 JRNL AUTH C.C.CHOU,F.FOROUHAR,Y.H.YEH,H.L.SHR,C.WANG,C.D.HSIAO JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL 10-KDA SUBDOMAIN OF JRNL TITL 2 HSC70 JRNL REF J.BIOL.CHEM. V. 278 30311 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12773536 JRNL DOI 10.1074/JBC.M304563200 REMARK 2 REMARK 2 RESOLUTION. 3.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 9139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 718 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2150 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 87 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.033 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2679 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.57 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.260 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.290 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.260 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.170 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.18 REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000005689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-18B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795, 0.9793, 0.940, 0.9802 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62784 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.450 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.19600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, 2-PROPANOL, SODIUM REMARK 280 ACETATE, PH 7.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.59233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 109.18467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.88850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 136.48083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.29617 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.59233 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 109.18467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 136.48083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 81.88850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.29617 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 27.29617 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 58.73950 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 101.73980 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 163.77700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA B 701 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 534 REMARK 465 VAL A 535 REMARK 465 PRO A 536 REMARK 465 MSE A 621 REMARK 465 PRO A 622 REMARK 465 GLY A 623 REMARK 465 GLY A 624 REMARK 465 PHE A 625 REMARK 465 PRO A 626 REMARK 465 GLY A 627 REMARK 465 GLY A 628 REMARK 465 GLY A 629 REMARK 465 ALA A 630 REMARK 465 PRO A 631 REMARK 465 PRO A 632 REMARK 465 SER A 633 REMARK 465 GLY A 634 REMARK 465 GLY A 635 REMARK 465 ALA A 636 REMARK 465 SER A 637 REMARK 465 SER A 638 REMARK 465 GLY A 639 REMARK 465 PRO A 640 REMARK 465 THR A 641 REMARK 465 ILE A 642 REMARK 465 GLU A 643 REMARK 465 GLU A 644 REMARK 465 VAL A 645 REMARK 465 ASP A 646 REMARK 465 LEU B 534 REMARK 465 VAL B 535 REMARK 465 PRO B 536 REMARK 465 GLY B 619 REMARK 465 GLY B 620 REMARK 465 MSE B 621 REMARK 465 PRO B 622 REMARK 465 GLY B 623 REMARK 465 GLY B 624 REMARK 465 PHE B 625 REMARK 465 PRO B 626 REMARK 465 GLY B 627 REMARK 465 GLY B 628 REMARK 465 GLY B 629 REMARK 465 ALA B 630 REMARK 465 PRO B 631 REMARK 465 PRO B 632 REMARK 465 SER B 633 REMARK 465 GLY B 634 REMARK 465 GLY B 635 REMARK 465 ALA B 636 REMARK 465 SER B 637 REMARK 465 SER B 638 REMARK 465 GLY B 639 REMARK 465 PRO B 640 REMARK 465 THR B 641 REMARK 465 ILE B 642 REMARK 465 GLU B 643 REMARK 465 GLU B 644 REMARK 465 VAL B 645 REMARK 465 ASP B 646 REMARK 465 PRO C 622 REMARK 465 GLY C 623 REMARK 465 GLY C 624 REMARK 465 PHE C 625 REMARK 465 PRO C 626 REMARK 465 GLY C 627 REMARK 465 GLY C 628 REMARK 465 GLY C 629 REMARK 465 ALA C 630 REMARK 465 PRO C 631 REMARK 465 PRO C 632 REMARK 465 SER C 633 REMARK 465 GLY C 634 REMARK 465 GLY C 635 REMARK 465 ALA C 636 REMARK 465 SER C 637 REMARK 465 SER C 638 REMARK 465 GLY C 639 REMARK 465 PRO C 640 REMARK 465 THR C 641 REMARK 465 ILE C 642 REMARK 465 GLU C 643 REMARK 465 GLU C 644 REMARK 465 VAL C 645 REMARK 465 ASP C 646 REMARK 465 LEU D 534 REMARK 465 VAL D 535 REMARK 465 PRO D 536 REMARK 465 GLY D 615 REMARK 465 GLY D 616 REMARK 465 MSE D 617 REMARK 465 PRO D 618 REMARK 465 GLY D 619 REMARK 465 GLY D 620 REMARK 465 MSE D 621 REMARK 465 PRO D 622 REMARK 465 GLY D 623 REMARK 465 GLY D 624 REMARK 465 PHE D 625 REMARK 465 PRO D 626 REMARK 465 GLY D 627 REMARK 465 GLY D 628 REMARK 465 GLY D 629 REMARK 465 ALA D 630 REMARK 465 PRO D 631 REMARK 465 PRO D 632 REMARK 465 SER D 633 REMARK 465 GLY D 634 REMARK 465 GLY D 635 REMARK 465 ALA D 636 REMARK 465 SER D 637 REMARK 465 SER D 638 REMARK 465 GLY D 639 REMARK 465 PRO D 640 REMARK 465 THR D 641 REMARK 465 ILE D 642 REMARK 465 GLU D 643 REMARK 465 GLU D 644 REMARK 465 VAL D 645 REMARK 465 ASP D 646 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 562 N ASP B 564 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU D 554 OE2 GLU D 554 7556 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER D 544 C TYR D 545 N 0.174 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 552 -71.42 -87.22 REMARK 500 VAL A 553 -19.64 -40.03 REMARK 500 GLN A 559 -39.66 -38.21 REMARK 500 GLN A 568 -76.80 -51.99 REMARK 500 LYS A 569 -40.54 -29.09 REMARK 500 ILE A 570 -82.78 -79.99 REMARK 500 LEU A 571 -71.45 -17.17 REMARK 500 ASP A 572 -75.19 -44.83 REMARK 500 GLU A 598 7.47 -59.33 REMARK 500 LEU A 599 -70.48 -105.21 REMARK 500 LYS A 601 -4.00 -59.23 REMARK 500 LYS A 609 -62.43 -162.72 REMARK 500 MSE A 617 -70.05 -105.43 REMARK 500 PRO A 618 98.38 5.24 REMARK 500 ASP B 555 -77.01 -14.52 REMARK 500 GLU B 556 -144.42 -166.75 REMARK 500 LYS B 557 45.03 -75.49 REMARK 500 GLN B 559 27.22 -53.44 REMARK 500 ILE B 562 26.95 -74.59 REMARK 500 ASN B 563 54.59 -18.37 REMARK 500 ASP B 564 -56.81 -162.65 REMARK 500 ASP B 566 31.19 -61.16 REMARK 500 LYS B 567 -38.39 -146.38 REMARK 500 SER B 579 -70.49 -73.09 REMARK 500 TRP B 580 -37.66 -33.25 REMARK 500 HIS B 594 -70.48 -64.51 REMARK 500 GLN B 612 31.64 -161.77 REMARK 500 SER B 613 -13.40 -155.93 REMARK 500 ALA B 614 59.69 -111.75 REMARK 500 MSE B 617 -22.17 -158.74 REMARK 500 VAL C 553 17.31 -68.43 REMARK 500 GLU C 556 -78.22 -149.62 REMARK 500 GLN C 559 -75.47 -75.98 REMARK 500 ASN C 563 129.45 -37.14 REMARK 500 LEU C 571 -73.42 -31.66 REMARK 500 GLU C 576 -70.62 -33.54 REMARK 500 ASP C 582 -72.69 -50.62 REMARK 500 LYS C 597 -78.68 -53.10 REMARK 500 GLU C 598 -30.75 -33.25 REMARK 500 SER C 613 -155.97 -110.42 REMARK 500 PRO C 618 34.42 -74.13 REMARK 500 SER D 539 125.33 -3.52 REMARK 500 LYS D 557 -12.23 -36.56 REMARK 500 GLN D 559 -67.97 -28.80 REMARK 500 LYS D 561 32.44 -67.47 REMARK 500 ASP D 566 -70.48 -74.88 REMARK 500 ILE D 577 -71.65 -50.75 REMARK 500 GLU D 590 -75.58 -44.50 REMARK 500 LYS D 597 -75.52 -70.48 REMARK 500 SER D 613 71.95 -105.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 702 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN D 563 OD1 REMARK 620 2 ASP D 564 OD1 94.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 703 DBREF 1UD0 A 542 646 UNP P63018 HSP7C_RAT 542 646 DBREF 1UD0 B 542 646 UNP P63018 HSP7C_RAT 542 646 DBREF 1UD0 C 542 646 UNP P63018 HSP7C_RAT 542 646 DBREF 1UD0 D 542 646 UNP P63018 HSP7C_RAT 542 646 SEQADV 1UD0 LEU A 534 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 VAL A 535 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 PRO A 536 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 ARG A 537 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 GLY A 538 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 SER A 539 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 HIS A 540 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 MSE A 541 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 MSE A 549 UNP P63018 MET 549 MODIFIED RESIDUE SEQADV 1UD0 MSE A 617 UNP P63018 MET 617 MODIFIED RESIDUE SEQADV 1UD0 MSE A 621 UNP P63018 MET 621 MODIFIED RESIDUE SEQADV 1UD0 LEU B 534 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 VAL B 535 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 PRO B 536 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 ARG B 537 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 GLY B 538 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 SER B 539 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 HIS B 540 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 MSE B 541 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 MSE B 549 UNP P63018 MET 549 MODIFIED RESIDUE SEQADV 1UD0 MSE B 617 UNP P63018 MET 617 MODIFIED RESIDUE SEQADV 1UD0 MSE B 621 UNP P63018 MET 621 MODIFIED RESIDUE SEQADV 1UD0 LEU C 534 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 VAL C 535 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 PRO C 536 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 ARG C 537 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 GLY C 538 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 SER C 539 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 HIS C 540 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 MSE C 541 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 MSE C 549 UNP P63018 MET 549 MODIFIED RESIDUE SEQADV 1UD0 MSE C 617 UNP P63018 MET 617 MODIFIED RESIDUE SEQADV 1UD0 MSE C 621 UNP P63018 MET 621 MODIFIED RESIDUE SEQADV 1UD0 LEU D 534 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 VAL D 535 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 PRO D 536 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 ARG D 537 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 GLY D 538 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 SER D 539 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 HIS D 540 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 MSE D 541 UNP P63018 CLONING ARTIFACT SEQADV 1UD0 MSE D 549 UNP P63018 MET 549 MODIFIED RESIDUE SEQADV 1UD0 MSE D 617 UNP P63018 MET 617 MODIFIED RESIDUE SEQADV 1UD0 MSE D 621 UNP P63018 MET 621 MODIFIED RESIDUE SEQRES 1 A 113 LEU VAL PRO ARG GLY SER HIS MSE LEU GLU SER TYR ALA SEQRES 2 A 113 PHE ASN MSE LYS ALA THR VAL GLU ASP GLU LYS LEU GLN SEQRES 3 A 113 GLY LYS ILE ASN ASP GLU ASP LYS GLN LYS ILE LEU ASP SEQRES 4 A 113 LYS CYS ASN GLU ILE ILE SER TRP LEU ASP LYS ASN GLN SEQRES 5 A 113 THR ALA GLU LYS GLU GLU PHE GLU HIS GLN GLN LYS GLU SEQRES 6 A 113 LEU GLU LYS VAL CYS ASN PRO ILE ILE THR LYS LEU TYR SEQRES 7 A 113 GLN SER ALA GLY GLY MSE PRO GLY GLY MSE PRO GLY GLY SEQRES 8 A 113 PHE PRO GLY GLY GLY ALA PRO PRO SER GLY GLY ALA SER SEQRES 9 A 113 SER GLY PRO THR ILE GLU GLU VAL ASP SEQRES 1 B 113 LEU VAL PRO ARG GLY SER HIS MSE LEU GLU SER TYR ALA SEQRES 2 B 113 PHE ASN MSE LYS ALA THR VAL GLU ASP GLU LYS LEU GLN SEQRES 3 B 113 GLY LYS ILE ASN ASP GLU ASP LYS GLN LYS ILE LEU ASP SEQRES 4 B 113 LYS CYS ASN GLU ILE ILE SER TRP LEU ASP LYS ASN GLN SEQRES 5 B 113 THR ALA GLU LYS GLU GLU PHE GLU HIS GLN GLN LYS GLU SEQRES 6 B 113 LEU GLU LYS VAL CYS ASN PRO ILE ILE THR LYS LEU TYR SEQRES 7 B 113 GLN SER ALA GLY GLY MSE PRO GLY GLY MSE PRO GLY GLY SEQRES 8 B 113 PHE PRO GLY GLY GLY ALA PRO PRO SER GLY GLY ALA SER SEQRES 9 B 113 SER GLY PRO THR ILE GLU GLU VAL ASP SEQRES 1 C 113 LEU VAL PRO ARG GLY SER HIS MSE LEU GLU SER TYR ALA SEQRES 2 C 113 PHE ASN MSE LYS ALA THR VAL GLU ASP GLU LYS LEU GLN SEQRES 3 C 113 GLY LYS ILE ASN ASP GLU ASP LYS GLN LYS ILE LEU ASP SEQRES 4 C 113 LYS CYS ASN GLU ILE ILE SER TRP LEU ASP LYS ASN GLN SEQRES 5 C 113 THR ALA GLU LYS GLU GLU PHE GLU HIS GLN GLN LYS GLU SEQRES 6 C 113 LEU GLU LYS VAL CYS ASN PRO ILE ILE THR LYS LEU TYR SEQRES 7 C 113 GLN SER ALA GLY GLY MSE PRO GLY GLY MSE PRO GLY GLY SEQRES 8 C 113 PHE PRO GLY GLY GLY ALA PRO PRO SER GLY GLY ALA SER SEQRES 9 C 113 SER GLY PRO THR ILE GLU GLU VAL ASP SEQRES 1 D 113 LEU VAL PRO ARG GLY SER HIS MSE LEU GLU SER TYR ALA SEQRES 2 D 113 PHE ASN MSE LYS ALA THR VAL GLU ASP GLU LYS LEU GLN SEQRES 3 D 113 GLY LYS ILE ASN ASP GLU ASP LYS GLN LYS ILE LEU ASP SEQRES 4 D 113 LYS CYS ASN GLU ILE ILE SER TRP LEU ASP LYS ASN GLN SEQRES 5 D 113 THR ALA GLU LYS GLU GLU PHE GLU HIS GLN GLN LYS GLU SEQRES 6 D 113 LEU GLU LYS VAL CYS ASN PRO ILE ILE THR LYS LEU TYR SEQRES 7 D 113 GLN SER ALA GLY GLY MSE PRO GLY GLY MSE PRO GLY GLY SEQRES 8 D 113 PHE PRO GLY GLY GLY ALA PRO PRO SER GLY GLY ALA SER SEQRES 9 D 113 SER GLY PRO THR ILE GLU GLU VAL ASP MODRES 1UD0 MSE A 541 MET SELENOMETHIONINE MODRES 1UD0 MSE A 549 MET SELENOMETHIONINE MODRES 1UD0 MSE A 617 MET SELENOMETHIONINE MODRES 1UD0 MSE B 541 MET SELENOMETHIONINE MODRES 1UD0 MSE B 549 MET SELENOMETHIONINE MODRES 1UD0 MSE B 617 MET SELENOMETHIONINE MODRES 1UD0 MSE C 541 MET SELENOMETHIONINE MODRES 1UD0 MSE C 549 MET SELENOMETHIONINE MODRES 1UD0 MSE C 617 MET SELENOMETHIONINE MODRES 1UD0 MSE C 621 MET SELENOMETHIONINE MODRES 1UD0 MSE D 541 MET SELENOMETHIONINE MODRES 1UD0 MSE D 549 MET SELENOMETHIONINE HET MSE A 541 8 HET MSE A 549 8 HET MSE A 617 8 HET MSE B 541 8 HET MSE B 549 8 HET MSE B 617 8 HET MSE C 541 8 HET MSE C 549 8 HET MSE C 617 8 HET MSE C 621 8 HET MSE D 541 8 HET MSE D 549 8 HET NA B 701 1 HET NA D 702 1 HET NA D 703 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 NA 3(NA 1+) FORMUL 8 HOH *23(H2 O) HELIX 1 1 GLY A 538 GLU A 554 1 17 HELIX 2 2 ASP A 555 GLN A 559 5 5 HELIX 3 3 ASN A 563 GLN A 596 1 34 HELIX 4 4 GLN A 596 TYR A 611 1 16 HELIX 5 5 ARG B 537 THR B 552 1 16 HELIX 6 6 LYS B 567 LYS B 601 1 35 HELIX 7 7 CYS B 603 TYR B 611 1 9 HELIX 8 8 VAL C 535 THR C 552 1 18 HELIX 9 9 ASN C 563 GLN C 612 1 50 HELIX 10 10 MSE D 541 GLU D 554 1 14 HELIX 11 11 ASP D 555 GLN D 559 5 5 HELIX 12 12 ASN D 563 SER D 613 1 51 LINK C HIS A 540 N MSE A 541 1555 1555 1.33 LINK C MSE A 541 N LEU A 542 1555 1555 1.32 LINK C ASN A 548 N MSE A 549 1555 1555 1.33 LINK C MSE A 549 N LYS A 550 1555 1555 1.33 LINK C GLY A 616 N MSE A 617 1555 1555 1.33 LINK C MSE A 617 N PRO A 618 1555 1555 1.35 LINK C HIS B 540 N MSE B 541 1555 1555 1.33 LINK C MSE B 541 N LEU B 542 1555 1555 1.33 LINK C ASN B 548 N MSE B 549 1555 1555 1.33 LINK C MSE B 549 N LYS B 550 1555 1555 1.33 LINK C GLY B 616 N MSE B 617 1555 1555 1.33 LINK C MSE B 617 N PRO B 618 1555 1555 1.35 LINK C HIS C 540 N MSE C 541 1555 1555 1.34 LINK C MSE C 541 N LEU C 542 1555 1555 1.32 LINK C ASN C 548 N MSE C 549 1555 1555 1.33 LINK C MSE C 549 N LYS C 550 1555 1555 1.33 LINK C GLY C 616 N MSE C 617 1555 1555 1.33 LINK C MSE C 617 N PRO C 618 1555 1555 1.36 LINK C GLY C 620 N MSE C 621 1555 1555 1.33 LINK C HIS D 540 N MSE D 541 1555 1555 1.33 LINK C MSE D 541 N LEU D 542 1555 1555 1.33 LINK C ASN D 548 N MSE D 549 1555 1555 1.33 LINK C MSE D 549 N LYS D 550 1555 1555 1.33 LINK OE2 GLU B 565 NA NA B 701 1555 1555 3.02 LINK OD1 ASN D 563 NA NA D 702 1555 1555 2.99 LINK OD1 ASP D 564 NA NA D 702 1555 1555 3.13 LINK OE2 GLU D 598 NA NA D 703 1555 1555 3.12 SITE 1 AC1 1 GLU B 565 SITE 1 AC2 2 ASN D 563 ASP D 564 SITE 1 AC3 2 HIS D 594 GLU D 598 CRYST1 117.479 117.479 163.777 90.00 90.00 120.00 P 61 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008512 0.004914 0.000000 0.00000 SCALE2 0.000000 0.009829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006106 0.00000