HEADER TRANSFERASE 21-MAY-03 1UET TITLE DIVERGENT EVOLUTIONS OF TRINUCLEOTIDE POLYMERIZATION REVEALED BY AN TITLE 2 ARCHAEAL CCA-ADDING ENZYME STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA NUCLEOTIDYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.25; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS TRANSFERASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 2 STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR O.NUREKI,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1UET 1 REMARK LINK REVDAT 3 13-JUL-11 1UET 1 VERSN REVDAT 2 24-FEB-09 1UET 1 VERSN REVDAT 1 02-DEC-03 1UET 0 JRNL AUTH M.OKABE,K.TOMITA,R.ISHITANI,R.ISHII,N.TAKEUCHI,F.ARISAKA, JRNL AUTH 2 O.NUREKI,S.YOKOYAMA JRNL TITL DIVERGENT EVOLUTIONS OF TRINUCLEOTIDE POLYMERIZATION JRNL TITL 2 REVEALED BY AN ARCHAEAL CCA-ADDING ENZYME STRUCTURE. JRNL REF EMBO J. V. 22 5918 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 14592988 JRNL DOI 10.1093/EMBOJ/CDG563 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1969248.820 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 32180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3221 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4507 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 490 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3559 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.07000 REMARK 3 B22 (A**2) : 4.76000 REMARK 3 B33 (A**2) : -3.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.95000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.970 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.860 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.730 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.560 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.160 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 53.89 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ACETATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ACETAET.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UET COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000005744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.974 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32180 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, PH 7.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.67550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.27400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.67550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.27400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 87.35100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 89 REMARK 465 TYR A 90 REMARK 465 GLU A 91 REMARK 465 ILE A 92 REMARK 465 ARG A 93 REMARK 465 TYR A 94 REMARK 465 ALA A 95 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 LYS A 121 REMARK 475 LYS A 124 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PRO A 67 C O REMARK 480 GLU A 68 N REMARK 480 SER A 71 CA C O CB OG REMARK 480 SER A 125 N CA CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 708 O HOH A 719 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 18 -55.94 -2.99 REMARK 500 GLU A 68 170.22 -52.41 REMARK 500 GLU A 77 -70.11 -63.85 REMARK 500 HIS A 97 -59.29 150.26 REMARK 500 CYS A 114 167.79 176.14 REMARK 500 LYS A 118 55.78 -70.00 REMARK 500 GLU A 119 161.68 65.00 REMARK 500 PRO A 120 72.01 -2.65 REMARK 500 LYS A 121 32.86 -145.97 REMARK 500 LYS A 124 45.49 38.23 REMARK 500 SER A 125 162.62 -31.94 REMARK 500 ALA A 126 -70.83 150.97 REMARK 500 ALA A 248 80.00 -154.43 REMARK 500 SER A 323 -161.58 -100.19 REMARK 500 TYR A 411 138.01 -172.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 59 OE2 REMARK 620 2 ASP A 61 OD2 85.4 REMARK 620 3 ASP A 110 OD2 166.1 98.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 166 O REMARK 620 2 ACT A 601 OXT 82.2 REMARK 620 3 HOH A 785 O 104.7 154.4 REMARK 620 4 HOH A 821 O 73.6 81.9 76.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 383 OG1 REMARK 620 2 GLU A 387 OE2 81.9 REMARK 620 3 GLU A 387 OE1 126.3 48.2 REMARK 620 4 HOH A 607 O 81.7 97.4 85.7 REMARK 620 5 HOH A 657 O 157.5 118.1 70.6 85.3 REMARK 620 6 HOH A 715 O 83.3 165.0 146.3 83.0 76.9 REMARK 620 7 HOH A 719 O 97.9 82.1 94.1 179.4 95.2 97.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACT A 601 O REMARK 620 2 ACT A 601 OXT 45.5 REMARK 620 3 HOH A 631 O 71.5 75.3 REMARK 620 4 HOH A 681 O 78.4 123.5 81.9 REMARK 620 5 HOH A 865 O 73.0 85.3 143.7 83.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UEU RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH CYTIDINE-5'-TRIPHOSPHATE REMARK 900 RELATED ID: 1UEV RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH ADENOSINE-5'-TRIPHOSPHATE REMARK 900 RELATED ID: MY_001000010.1 RELATED DB: TARGETDB DBREF 1UET A 1 437 UNP O28126 CCA_ARCFU 1 437 SEQRES 1 A 437 MET LYS VAL GLU GLU ILE LEU GLU LYS ALA LEU GLU LEU SEQRES 2 A 437 VAL ILE PRO ASP GLU GLU GLU VAL ARG LYS GLY ARG GLU SEQRES 3 A 437 ALA GLU GLU GLU LEU ARG ARG ARG LEU ASP GLU LEU GLY SEQRES 4 A 437 VAL GLU TYR VAL PHE VAL GLY SER TYR ALA ARG ASN THR SEQRES 5 A 437 TRP LEU LYS GLY SER LEU GLU ILE ASP VAL PHE LEU LEU SEQRES 6 A 437 PHE PRO GLU GLU PHE SER LYS GLU GLU LEU ARG GLU ARG SEQRES 7 A 437 GLY LEU GLU ILE GLY LYS ALA VAL LEU ASP SER TYR GLU SEQRES 8 A 437 ILE ARG TYR ALA GLU HIS PRO TYR VAL HIS GLY VAL VAL SEQRES 9 A 437 LYS GLY VAL GLU VAL ASP VAL VAL PRO CYS TYR LYS LEU SEQRES 10 A 437 LYS GLU PRO LYS ASN ILE LYS SER ALA VAL ASP ARG THR SEQRES 11 A 437 PRO PHE HIS HIS LYS TRP LEU GLU GLY ARG ILE LYS GLY SEQRES 12 A 437 LYS GLU ASN GLU VAL ARG LEU LEU LYS GLY PHE LEU LYS SEQRES 13 A 437 ALA ASN GLY ILE TYR GLY ALA GLU TYR LYS VAL ARG GLY SEQRES 14 A 437 PHE SER GLY TYR LEU CYS GLU LEU LEU ILE VAL PHE TYR SEQRES 15 A 437 GLY SER PHE LEU GLU THR VAL LYS ASN ALA ARG ARG TRP SEQRES 16 A 437 THR ARG ARG THR VAL ILE ASP VAL ALA LYS GLY GLU VAL SEQRES 17 A 437 ARG LYS GLY GLU GLU PHE PHE VAL VAL ASP PRO VAL ASP SEQRES 18 A 437 GLU LYS ARG ASN VAL ALA ALA ASN LEU SER LEU ASP ASN SEQRES 19 A 437 LEU ALA ARG PHE VAL HIS LEU CYS ARG GLU PHE MET GLU SEQRES 20 A 437 ALA PRO SER LEU GLY PHE PHE LYS PRO LYS HIS PRO LEU SEQRES 21 A 437 GLU ILE GLU PRO GLU ARG LEU ARG LYS ILE VAL GLU GLU SEQRES 22 A 437 ARG GLY THR ALA VAL PHE ALA VAL LYS PHE ARG LYS PRO SEQRES 23 A 437 ASP ILE VAL ASP ASP ASN LEU TYR PRO GLN LEU GLU ARG SEQRES 24 A 437 ALA SER ARG LYS ILE PHE GLU PHE LEU GLU ARG GLU ASN SEQRES 25 A 437 PHE MET PRO LEU ARG SER ALA PHE LYS ALA SER GLU GLU SEQRES 26 A 437 PHE CYS TYR LEU LEU PHE GLU CYS GLN ILE LYS GLU ILE SEQRES 27 A 437 SER ARG VAL PHE ARG ARG MET GLY PRO GLN PHE GLU ASP SEQRES 28 A 437 GLU ARG ASN VAL LYS LYS PHE LEU SER ARG ASN ARG ALA SEQRES 29 A 437 PHE ARG PRO PHE ILE GLU ASN GLY ARG TRP TRP ALA PHE SEQRES 30 A 437 GLU MET ARG LYS PHE THR THR PRO GLU GLU GLY VAL ARG SEQRES 31 A 437 SER TYR ALA SER THR HIS TRP HIS THR LEU GLY LYS ASN SEQRES 32 A 437 VAL GLY GLU SER ILE ARG GLU TYR PHE GLU ILE ILE SER SEQRES 33 A 437 GLY GLU LYS LEU PHE LYS GLU PRO VAL THR ALA GLU LEU SEQRES 34 A 437 CYS GLU MET MET GLY VAL LYS ASP HET ACT A 601 4 HET CA A 501 1 HET MG A 502 1 HET CA A 503 1 HET CA A 504 1 HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 CA 3(CA 2+) FORMUL 4 MG MG 2+ FORMUL 7 HOH *304(H2 O) HELIX 1 1 LYS A 2 ILE A 15 1 14 HELIX 2 2 ASP A 17 LEU A 38 1 22 HELIX 3 3 SER A 71 GLY A 83 1 13 HELIX 4 4 ARG A 129 LYS A 142 1 14 HELIX 5 5 LYS A 144 ASN A 158 1 15 HELIX 6 6 SER A 171 GLY A 183 1 13 HELIX 7 7 SER A 184 ARG A 193 1 10 HELIX 8 8 ALA A 204 GLY A 206 5 3 HELIX 9 9 SER A 231 ALA A 248 1 18 HELIX 10 10 SER A 250 LYS A 255 5 6 HELIX 11 11 GLU A 263 GLY A 275 1 13 HELIX 12 12 VAL A 289 GLU A 311 1 23 HELIX 13 13 ASP A 351 ARG A 361 1 11 HELIX 14 14 THR A 384 HIS A 396 1 13 HELIX 15 15 TRP A 397 LEU A 400 5 4 HELIX 16 16 GLY A 401 TYR A 411 1 11 HELIX 17 17 GLY A 417 GLU A 423 1 7 HELIX 18 18 VAL A 425 GLY A 434 1 10 SHEET 1 A 5 TYR A 42 PHE A 44 0 SHEET 2 A 5 ILE A 60 LEU A 65 -1 O PHE A 63 N VAL A 43 SHEET 3 A 5 VAL A 107 CYS A 114 1 O VAL A 112 N LEU A 64 SHEET 4 A 5 VAL A 100 VAL A 104 -1 N VAL A 100 O VAL A 111 SHEET 5 A 5 ALA A 85 LEU A 87 -1 N LEU A 87 O HIS A 101 SHEET 1 B 3 GLU A 207 LYS A 210 0 SHEET 2 B 3 THR A 199 ASP A 202 -1 N VAL A 200 O ARG A 209 SHEET 3 B 3 PHE A 215 VAL A 217 1 O PHE A 215 N ILE A 201 SHEET 1 C 4 PRO A 315 ALA A 322 0 SHEET 2 C 4 PHE A 326 CYS A 333 -1 O LEU A 330 N ALA A 319 SHEET 3 C 4 ALA A 277 ARG A 284 -1 N PHE A 283 O CYS A 327 SHEET 4 C 4 GLU A 413 SER A 416 -1 O GLU A 413 N LYS A 282 SHEET 1 D 3 VAL A 341 GLN A 348 0 SHEET 2 D 3 ARG A 373 MET A 379 -1 O ALA A 376 N ARG A 344 SHEET 3 D 3 PHE A 368 GLU A 370 -1 N GLU A 370 O ARG A 373 LINK OE2 GLU A 59 MG MG A 502 1555 1555 2.25 LINK OD2 ASP A 61 MG MG A 502 1555 1555 2.59 LINK OD2 ASP A 110 MG MG A 502 1555 1555 2.37 LINK O LYS A 166 CA CA A 504 1555 1555 2.56 LINK OG1 THR A 383 CA CA A 503 1555 1555 2.65 LINK OE2 GLU A 387 CA CA A 503 1555 1555 2.66 LINK OE1 GLU A 387 CA CA A 503 1555 1555 2.76 LINK CA CA A 501 O ACT A 601 1555 1555 3.00 LINK CA CA A 501 OXT ACT A 601 1555 1555 2.64 LINK CA CA A 501 O HOH A 631 1555 1555 2.62 LINK CA CA A 501 O HOH A 681 1555 1555 2.80 LINK CA CA A 501 O HOH A 865 1555 1555 3.03 LINK CA CA A 503 O HOH A 607 1555 1555 2.69 LINK CA CA A 503 O HOH A 657 1555 3545 2.73 LINK CA CA A 503 O HOH A 715 1555 3545 2.57 LINK CA CA A 503 O HOH A 719 1555 1555 2.61 LINK CA CA A 504 OXT ACT A 601 1555 1555 2.64 LINK CA CA A 504 O HOH A 785 1555 1555 2.67 LINK CA CA A 504 O HOH A 821 1555 1555 2.79 SITE 1 AC1 7 LYS A 166 VAL A 167 ARG A 168 ASN A 234 SITE 2 AC1 7 CA A 501 CA A 504 HOH A 831 SITE 1 AC2 4 ACT A 601 HOH A 631 HOH A 681 HOH A 865 SITE 1 AC3 3 GLU A 59 ASP A 61 ASP A 110 SITE 1 AC4 6 THR A 383 GLU A 387 HOH A 607 HOH A 657 SITE 2 AC4 6 HOH A 715 HOH A 719 SITE 1 AC5 4 LYS A 166 ACT A 601 HOH A 785 HOH A 821 CRYST1 87.351 76.548 76.771 90.00 98.33 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011448 0.000000 0.001676 0.00000 SCALE2 0.000000 0.013064 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013165 0.00000