HEADER LIGASE 10-JUN-03 1UFV TITLE CRYSTAL STRUCTURE OF PANTOTHENATE SYNTHETASE FROM THERMUS THERMOPHILUS TITLE 2 HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTOATE-BETA-ALANINE LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PANTOTHENATE SYNTHETASE; COMPND 5 EC: 6.3.2.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: MUTATION OF VAL 48 TO ALA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: PANC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS STRUCTURAL GENOMICS, DIMER, DOMAINS, ROSSMANN FOLD, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR B.BAGAUTDINOV,S.KURAMITSU,S.YOKOYAMA,M.MIYANO,T.H.TAHIROV,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 7 30-OCT-24 1UFV 1 REMARK REVDAT 6 15-NOV-23 1UFV 1 REMARK REVDAT 5 25-OCT-23 1UFV 1 REMARK LINK REVDAT 4 13-JUL-11 1UFV 1 VERSN REVDAT 3 24-FEB-09 1UFV 1 VERSN REVDAT 2 16-DEC-03 1UFV 1 COMPND REVDAT 1 24-JUN-03 1UFV 0 JRNL AUTH B.BAGAUTDINOV,S.KURAMITSU,S.YOKOYAMA,M.MIYANO,T.H.TAHIROV JRNL TITL CRYSTAL STRUCTURE OF PANTOTHENATE SYNTHETASE FROM THERMUS JRNL TITL 2 THERMOPHILUS HB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 70612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3480 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 375 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 478 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.18000 REMARK 3 B22 (A**2) : 8.18000 REMARK 3 B33 (A**2) : -16.35000 REMARK 3 B12 (A**2) : 5.74000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.26 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.34 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT PERFORMED USING ANOMALOUS REMARK 3 F', F'' LIBRARY FILE FOR SE, CL AT 1 ANGSTROM REMARK 4 REMARK 4 1UFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000005782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 602601 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: 1N2E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, TRIS, LITHIUM CLORIDE, PH 8, REMARK 280 MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.99133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 177.98267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 133.48700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 222.47833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.49567 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.99133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 177.98267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 222.47833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 133.48700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.49567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BILOGICAL ASSEMBLY IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 132.83700 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 76.69348 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -355.96533 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1551 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 206 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 206 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 51 113.24 -160.12 REMARK 500 GLU A 61 -155.37 -85.91 REMARK 500 ASP A 69 80.91 -165.39 REMARK 500 ALA A 99 10.45 -142.29 REMARK 500 TRP A 112 -109.98 45.24 REMARK 500 ARG A 117 76.56 -119.91 REMARK 500 ASP B 62 50.63 -91.34 REMARK 500 ASP B 69 76.50 -159.10 REMARK 500 TRP B 112 -116.62 50.47 REMARK 500 PRO B 196 -3.67 -58.14 REMARK 500 VAL B 229 74.28 -119.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000263.1 RELATED DB: TARGETDB DBREF 1UFV A 1 276 UNP P83701 P83701_THETH 1 276 DBREF 1UFV B 1 276 UNP P83701 P83701_THETH 1 276 SEQRES 1 A 276 MSE ARG THR VAL SER THR VAL ALA GLU LEU ARG ALA ALA SEQRES 2 A 276 LEU PRO ARG GLU GLY VAL GLY PHE VAL PRO THR MSE GLY SEQRES 3 A 276 TYR LEU HIS ARG GLY HIS LEU ALA LEU VAL GLU ARG ALA SEQRES 4 A 276 ARG ARG GLU ASN PRO PHE VAL VAL ALA SER VAL PHE VAL SEQRES 5 A 276 ASN PRO LEU GLN PHE GLY PRO GLY GLU ASP TYR HIS ARG SEQRES 6 A 276 TYR PRO ARG ASP LEU GLU ARG ASP ARG ALA LEU LEU GLN SEQRES 7 A 276 GLU ALA GLY VAL ASP LEU LEU PHE ALA PRO GLY VAL GLU SEQRES 8 A 276 GLU MSE TYR PRO GLU GLY PHE ALA THR ARG VAL GLN VAL SEQRES 9 A 276 GLU GLY PRO LEU THR ALA LEU TRP GLU GLY ALA VAL ARG SEQRES 10 A 276 PRO GLY HIS PHE GLN GLY VAL ALA THR VAL VAL ALA ARG SEQRES 11 A 276 LEU PHE LEU LEU VAL GLN PRO GLN ARG ALA TYR PHE GLY SEQRES 12 A 276 GLU LYS ASP TYR GLN GLN LEU LEU VAL VAL ARG ARG MSE SEQRES 13 A 276 VAL ARG ASP LEU GLY PHE PRO VAL GLU VAL VAL GLY VAL SEQRES 14 A 276 PRO THR VAL ARG GLU GLU ASP GLY LEU ALA LEU SER SER SEQRES 15 A 276 ARG ASN VAL TYR LEU SER PRO GLU THR ARG LYS LYS ALA SEQRES 16 A 276 PRO VAL LEU TYR ARG ALA LEU LEU ALA MSE ARG GLU VAL SEQRES 17 A 276 ALA GLY GLN GLY GLY SER VAL ALA GLU ALA LEU ARG ALA SEQRES 18 A 276 GLY GLU GLU ALA LEU ARG ALA VAL PRO GLU PHE ARG LYS SEQRES 19 A 276 ASP TYR LEU ALA ILE VAL HIS PRO GLU THR LEU LEU PRO SEQRES 20 A 276 LEU SER ASP TRP VAL ALA GLY ALA ARG GLY ILE VAL ALA SEQRES 21 A 276 GLY ARG PHE PRO GLU ALA ARG LEU ILE ASP ASN LEU GLU SEQRES 22 A 276 VAL TYR PRO SEQRES 1 B 276 MSE ARG THR VAL SER THR VAL ALA GLU LEU ARG ALA ALA SEQRES 2 B 276 LEU PRO ARG GLU GLY VAL GLY PHE VAL PRO THR MSE GLY SEQRES 3 B 276 TYR LEU HIS ARG GLY HIS LEU ALA LEU VAL GLU ARG ALA SEQRES 4 B 276 ARG ARG GLU ASN PRO PHE VAL VAL ALA SER VAL PHE VAL SEQRES 5 B 276 ASN PRO LEU GLN PHE GLY PRO GLY GLU ASP TYR HIS ARG SEQRES 6 B 276 TYR PRO ARG ASP LEU GLU ARG ASP ARG ALA LEU LEU GLN SEQRES 7 B 276 GLU ALA GLY VAL ASP LEU LEU PHE ALA PRO GLY VAL GLU SEQRES 8 B 276 GLU MSE TYR PRO GLU GLY PHE ALA THR ARG VAL GLN VAL SEQRES 9 B 276 GLU GLY PRO LEU THR ALA LEU TRP GLU GLY ALA VAL ARG SEQRES 10 B 276 PRO GLY HIS PHE GLN GLY VAL ALA THR VAL VAL ALA ARG SEQRES 11 B 276 LEU PHE LEU LEU VAL GLN PRO GLN ARG ALA TYR PHE GLY SEQRES 12 B 276 GLU LYS ASP TYR GLN GLN LEU LEU VAL VAL ARG ARG MSE SEQRES 13 B 276 VAL ARG ASP LEU GLY PHE PRO VAL GLU VAL VAL GLY VAL SEQRES 14 B 276 PRO THR VAL ARG GLU GLU ASP GLY LEU ALA LEU SER SER SEQRES 15 B 276 ARG ASN VAL TYR LEU SER PRO GLU THR ARG LYS LYS ALA SEQRES 16 B 276 PRO VAL LEU TYR ARG ALA LEU LEU ALA MSE ARG GLU VAL SEQRES 17 B 276 ALA GLY GLN GLY GLY SER VAL ALA GLU ALA LEU ARG ALA SEQRES 18 B 276 GLY GLU GLU ALA LEU ARG ALA VAL PRO GLU PHE ARG LYS SEQRES 19 B 276 ASP TYR LEU ALA ILE VAL HIS PRO GLU THR LEU LEU PRO SEQRES 20 B 276 LEU SER ASP TRP VAL ALA GLY ALA ARG GLY ILE VAL ALA SEQRES 21 B 276 GLY ARG PHE PRO GLU ALA ARG LEU ILE ASP ASN LEU GLU SEQRES 22 B 276 VAL TYR PRO MODRES 1UFV MSE A 1 MET SELENOMETHIONINE MODRES 1UFV MSE A 25 MET SELENOMETHIONINE MODRES 1UFV MSE A 93 MET SELENOMETHIONINE MODRES 1UFV MSE A 156 MET SELENOMETHIONINE MODRES 1UFV MSE A 205 MET SELENOMETHIONINE MODRES 1UFV MSE B 1 MET SELENOMETHIONINE MODRES 1UFV MSE B 25 MET SELENOMETHIONINE MODRES 1UFV MSE B 93 MET SELENOMETHIONINE MODRES 1UFV MSE B 156 MET SELENOMETHIONINE MODRES 1UFV MSE B 205 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 25 8 HET MSE A 93 8 HET MSE A 156 8 HET MSE A 205 8 HET MSE B 1 8 HET MSE B 25 8 HET MSE B 93 8 HET MSE B 156 8 HET MSE B 205 8 HET CL A1001 1 HET CL A1002 1 HET GOL A1300 6 HET GOL A1400 6 HET GOL A 600 6 HET GOL A 700 6 HET CL B1003 1 HET GOL B 500 6 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 CL 3(CL 1-) FORMUL 5 GOL 5(C3 H8 O3) FORMUL 11 HOH *478(H2 O) HELIX 1 1 THR A 6 LEU A 14 1 9 HELIX 2 2 HIS A 29 ASN A 43 1 15 HELIX 3 3 ASN A 53 PHE A 57 5 5 HELIX 4 4 ASP A 69 GLY A 81 1 13 HELIX 5 5 GLY A 89 TYR A 94 1 6 HELIX 6 6 GLY A 106 LEU A 111 1 6 HELIX 7 7 TRP A 112 ARG A 117 1 6 HELIX 8 8 GLY A 119 GLN A 136 1 18 HELIX 9 9 ASP A 146 GLY A 161 1 16 HELIX 10 10 SER A 181 LEU A 187 5 7 HELIX 11 11 SER A 188 ALA A 195 1 8 HELIX 12 12 PRO A 196 GLN A 211 1 16 HELIX 13 13 SER A 214 ARG A 227 1 14 HELIX 14 14 THR B 6 LEU B 14 1 9 HELIX 15 15 HIS B 29 ASN B 43 1 15 HELIX 16 16 ASN B 53 PHE B 57 5 5 HELIX 17 17 ASP B 69 GLY B 81 1 13 HELIX 18 18 GLY B 89 TYR B 94 1 6 HELIX 19 19 GLY B 106 LEU B 111 1 6 HELIX 20 20 TRP B 112 ARG B 117 1 6 HELIX 21 21 GLY B 119 GLN B 136 1 18 HELIX 22 22 ASP B 146 GLY B 161 1 16 HELIX 23 23 SER B 181 LEU B 187 5 7 HELIX 24 24 SER B 188 ALA B 195 1 8 HELIX 25 25 PRO B 196 GLN B 211 1 16 HELIX 26 26 SER B 214 ALA B 228 1 15 SHEET 1 A 6 ARG A 2 VAL A 4 0 SHEET 2 A 6 LEU A 84 PHE A 86 1 O LEU A 85 N VAL A 4 SHEET 3 A 6 PHE A 45 VAL A 50 1 N ALA A 48 O PHE A 86 SHEET 4 A 6 VAL A 19 THR A 24 1 N GLY A 20 O PHE A 45 SHEET 5 A 6 ARG A 139 GLY A 143 1 O TYR A 141 N PHE A 21 SHEET 6 A 6 GLU A 165 VAL A 169 1 O VAL A 167 N ALA A 140 SHEET 1 B 2 THR A 100 VAL A 104 0 SHEET 2 B 2 THR B 100 VAL B 104 -1 O GLN B 103 N ARG A 101 SHEET 1 C 3 ARG A 233 VAL A 240 0 SHEET 2 C 3 ARG A 256 PHE A 263 -1 O ARG A 256 N VAL A 240 SHEET 3 C 3 ALA A 266 GLU A 273 -1 O ALA A 266 N PHE A 263 SHEET 1 D 6 ARG B 2 VAL B 4 0 SHEET 2 D 6 LEU B 84 PHE B 86 1 O LEU B 85 N VAL B 4 SHEET 3 D 6 PHE B 45 VAL B 50 1 N ALA B 48 O PHE B 86 SHEET 4 D 6 VAL B 19 THR B 24 1 N GLY B 20 O PHE B 45 SHEET 5 D 6 ARG B 139 GLY B 143 1 O ARG B 139 N PHE B 21 SHEET 6 D 6 GLU B 165 VAL B 169 1 O VAL B 167 N ALA B 140 SHEET 1 E 3 ARG B 233 VAL B 240 0 SHEET 2 E 3 ARG B 256 PHE B 263 -1 O ARG B 256 N VAL B 240 SHEET 3 E 3 ALA B 266 GLU B 273 -1 O LEU B 272 N GLY B 257 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C THR A 24 N MSE A 25 1555 1555 1.33 LINK C MSE A 25 N GLY A 26 1555 1555 1.33 LINK C GLU A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N TYR A 94 1555 1555 1.33 LINK C ARG A 155 N MSE A 156 1555 1555 1.33 LINK C MSE A 156 N VAL A 157 1555 1555 1.32 LINK C ALA A 204 N MSE A 205 1555 1555 1.33 LINK C MSE A 205 N ARG A 206 1555 1555 1.33 LINK C MSE B 1 N ARG B 2 1555 1555 1.33 LINK C THR B 24 N MSE B 25 1555 1555 1.33 LINK C MSE B 25 N GLY B 26 1555 1555 1.33 LINK C GLU B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N TYR B 94 1555 1555 1.33 LINK C ARG B 155 N MSE B 156 1555 1555 1.33 LINK C MSE B 156 N VAL B 157 1555 1555 1.33 LINK C ALA B 204 N MSE B 205 1555 1555 1.33 LINK C MSE B 205 N ARG B 206 1555 1555 1.33 CISPEP 1 TYR A 275 PRO A 276 0 0.37 CISPEP 2 TYR B 275 PRO B 276 0 0.10 SITE 1 AC1 4 GLN A 56 ARG A 117 HIS A 120 ARG A 183 SITE 1 AC2 3 HIS A 29 SER A 182 GOL A1300 SITE 1 AC3 4 MSE B 25 GLN B 56 ARG B 117 ARG B 183 SITE 1 AC4 10 PRO A 23 THR A 24 MSE A 25 HIS A 32 SITE 2 AC4 10 LEU A 35 CL A1002 GOL A1400 HOH A1423 SITE 3 AC4 10 HOH A1431 HOH A1562 SITE 1 AC5 6 GLN A 56 VAL A 127 GLN A 149 GOL A1300 SITE 2 AC5 6 HOH A1401 HOH A1567 SITE 1 AC6 4 GLN B 56 VAL B 127 GLN B 149 HOH B1032 SITE 1 AC7 6 GLU A 61 ASP A 62 ARG A 117 ARG A 183 SITE 2 AC7 6 ARG A 267 HOH A1409 SITE 1 AC8 6 LEU A 55 TYR A 94 ARG A 101 PRO A 118 SITE 2 AC8 6 HOH A1559 HOH A1653 CRYST1 88.558 88.558 266.974 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011290 0.006520 0.000000 0.00000 SCALE2 0.000000 0.013040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003750 0.00000 HETATM 1 N MSE A 1 76.216 16.776-212.001 1.00 46.63 N HETATM 2 CA MSE A 1 75.931 17.793-210.946 1.00 45.11 C HETATM 3 C MSE A 1 77.197 18.454-210.416 1.00 45.04 C HETATM 4 O MSE A 1 78.204 17.789-210.176 1.00 44.53 O HETATM 5 CB MSE A 1 75.188 17.145-209.778 1.00 44.57 C HETATM 6 CG MSE A 1 74.966 18.074-208.591 1.00 44.06 C HETATM 7 SE MSE A 1 74.082 17.173-207.135 1.00 44.23 SE HETATM 8 CE MSE A 1 75.626 16.387-206.284 1.00 40.79 C