HEADER TRANSPORT PROTEIN/HYDROLASE 12-AUG-03 1UJW TITLE STRUCTURE OF THE COMPLEX BETWEEN BTUB AND COLICIN E3 RECEPTOR BINDING TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN B12 RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COBALAMIN TRANSPORTER; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: COLICIN E3; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: R-DOMAIN(RESIDUES 314-448); COMPND 10 SYNONYM: COLICIN E3 A CHAIN, RIBONUCLEASE; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PJC3; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET-216(+) KEYWDS BETA-BARREL, COILED-COIL, TRANSPORT PROTEIN-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.KURISU,S.D.ZAKHAROV,M.V.ZHALNINA,S.BANO,V.Y.EROUKOVA, AUTHOR 2 T.I.ROKITSKAYA,Y.N.ANTONENKO,M.C.WIENER,W.A.CRAMER REVDAT 5 25-OCT-23 1UJW 1 HETSYN LINK REVDAT 4 29-JUL-20 1UJW 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 1UJW 1 VERSN REVDAT 2 24-FEB-09 1UJW 1 VERSN REVDAT 1 25-NOV-03 1UJW 0 JRNL AUTH G.KURISU,S.D.ZAKHAROV,M.V.ZHALNINA,S.BANO,V.Y.EROUKOVA, JRNL AUTH 2 T.I.ROKITSKAYA,Y.N.ANTONENKO,M.C.WIENER,W.A.CRAMER JRNL TITL THE STRUCTURE OF BTUB WITH BOUND COLICIN E3 R-DOMAIN IMPLIES JRNL TITL 2 A TRANSLOCON JRNL REF NAT.STRUCT.BIOL. V. 10 948 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 14528295 JRNL DOI 10.1038/NSB997 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 35281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1864 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2370 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 232 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.66000 REMARK 3 B22 (A**2) : 6.60000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.469 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.333 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.275 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.189 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5816 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5103 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7851 ; 1.868 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11889 ; 0.936 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 689 ; 8.574 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 812 ; 0.160 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6442 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1224 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1251 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6191 ; 0.249 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3760 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 98 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.102 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 66 ; 0.228 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3412 ; 0.500 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5452 ; 0.969 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2404 ; 1.754 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2399 ; 2.782 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4610 37.1010 108.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.3741 T22: 0.1796 REMARK 3 T33: 0.0479 T12: -0.0627 REMARK 3 T13: 0.0323 T23: 0.0819 REMARK 3 L TENSOR REMARK 3 L11: 4.0485 L22: 2.4505 REMARK 3 L33: 2.8904 L12: -0.8507 REMARK 3 L13: 0.5600 L23: -0.5865 REMARK 3 S TENSOR REMARK 3 S11: 0.1103 S12: 0.2689 S13: 0.2505 REMARK 3 S21: 0.1042 S22: -0.0086 S23: -0.0295 REMARK 3 S31: -0.8151 S32: 0.1827 S33: -0.1016 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 594 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1180 36.3830 104.1220 REMARK 3 T TENSOR REMARK 3 T11: 0.3478 T22: 0.3450 REMARK 3 T33: 0.0475 T12: -0.0049 REMARK 3 T13: 0.0287 T23: 0.0942 REMARK 3 L TENSOR REMARK 3 L11: 1.5866 L22: 1.0422 REMARK 3 L33: 3.1437 L12: -0.1616 REMARK 3 L13: 0.1097 L23: -0.2074 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: 0.3747 S13: 0.2645 REMARK 3 S21: -0.0705 S22: 0.0095 S23: 0.0504 REMARK 3 S31: -0.6582 S32: 0.1207 S33: -0.0452 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 323 B 438 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3960 8.3000 59.0160 REMARK 3 T TENSOR REMARK 3 T11: 0.6668 T22: 0.8210 REMARK 3 T33: 0.2975 T12: 0.0519 REMARK 3 T13: -0.1526 T23: -0.1103 REMARK 3 L TENSOR REMARK 3 L11: 0.2135 L22: 6.6473 REMARK 3 L33: 6.1573 L12: -0.3343 REMARK 3 L13: -0.7978 L23: 5.9531 REMARK 3 S TENSOR REMARK 3 S11: 0.1126 S12: 0.3052 S13: -0.1384 REMARK 3 S21: 0.0061 S22: 0.3562 S23: -0.5903 REMARK 3 S31: 0.3558 S32: 0.0013 S33: -0.4688 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1UJW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000005908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37175 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1NQE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.46650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.79750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.04900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 116.79750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.46650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.04900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 THR A 3 REMARK 465 TYR A 178 REMARK 465 ASP A 179 REMARK 465 VAL A 180 REMARK 465 VAL A 181 REMARK 465 ALA A 182 REMARK 465 TYR A 183 REMARK 465 GLY A 184 REMARK 465 ASN A 185 REMARK 465 THR A 186 REMARK 465 GLY A 187 REMARK 465 THR A 188 REMARK 465 GLN A 189 REMARK 465 ALA A 190 REMARK 465 GLN A 191 REMARK 465 THR A 192 REMARK 465 HIS B 314 REMARK 465 PRO B 315 REMARK 465 VAL B 316 REMARK 465 GLU B 317 REMARK 465 ALA B 318 REMARK 465 ALA B 319 REMARK 465 GLU B 320 REMARK 465 ARG B 321 REMARK 465 ASN B 322 REMARK 465 LYS B 439 REMARK 465 ARG B 440 REMARK 465 SER B 441 REMARK 465 ALA B 442 REMARK 465 GLU B 443 REMARK 465 ASN B 444 REMARK 465 ASN B 445 REMARK 465 LEU B 446 REMARK 465 ASN B 447 REMARK 465 ASP B 448 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 436 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 106 O1 GOL A 703 1.42 REMARK 500 O ASP A 528 O THR A 538 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 354 CG GLU A 354 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 33 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 81 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 171 CB - CG - OD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 193 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 195 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 230 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 274 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 285 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 VAL A 304 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP A 331 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 360 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 411 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 492 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 508 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 513 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 336 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 359 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 14 -23.25 80.72 REMARK 500 ARG A 47 -25.46 -30.75 REMARK 500 ASN A 57 57.27 -91.98 REMARK 500 ARG A 114 34.87 -166.25 REMARK 500 ASP A 121 -4.27 82.13 REMARK 500 ALA A 122 47.88 -84.44 REMARK 500 PRO A 136 156.36 -46.92 REMARK 500 SER A 146 164.92 -47.70 REMARK 500 ASP A 162 -24.84 72.12 REMARK 500 ASN A 194 -138.06 -100.50 REMARK 500 ASP A 195 61.91 -67.35 REMARK 500 PHE A 197 112.72 170.41 REMARK 500 ASP A 230 102.69 -23.15 REMARK 500 PRO A 238 151.52 -42.91 REMARK 500 ARG A 283 -40.67 156.41 REMARK 500 TYR A 284 67.99 -115.35 REMARK 500 SER A 363 -48.00 -20.14 REMARK 500 ASN A 407 99.90 -160.52 REMARK 500 ASN A 469 145.25 -176.42 REMARK 500 PRO A 474 41.20 -92.98 REMARK 500 ALA A 489 32.21 -82.53 REMARK 500 ILE A 490 -60.58 -132.44 REMARK 500 ASP A 492 28.24 48.44 REMARK 500 ARG A 497 -11.22 86.19 REMARK 500 ASP A 513 -5.37 72.33 REMARK 500 TYR A 531 -3.07 -54.48 REMARK 500 GLN A 537 -143.66 -96.35 REMARK 500 VAL A 539 128.08 6.04 REMARK 500 THR A 556 152.14 166.69 REMARK 500 ASP A 570 20.72 44.73 REMARK 500 TYR A 573 -167.38 -172.60 REMARK 500 ALA A 582 135.07 -35.63 REMARK 500 HIS B 380 36.04 -96.64 REMARK 500 ASP B 381 81.83 -158.09 REMARK 500 ASP B 437 103.15 -40.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 160 GLY A 161 -149.21 REMARK 500 TYR A 229 ASP A 230 147.56 REMARK 500 PRO A 474 LEU A 475 -149.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NQE RELATED DB: PDB REMARK 900 COBALAMIN TRANSPORTER REMARK 900 RELATED ID: 1JCH RELATED DB: PDB REMARK 900 COLICIN E3 DBREF 1UJW A 1 594 UNP P06129 BTUB_ECOLI 21 614 DBREF 1UJW B 314 448 UNP P00646 CEA3_ECOLI 314 448 SEQRES 1 A 594 GLN ASP THR SER PRO ASP THR LEU VAL VAL THR ALA ASN SEQRES 2 A 594 ARG PHE GLU GLN PRO ARG SER THR VAL LEU ALA PRO THR SEQRES 3 A 594 THR VAL VAL THR ARG GLN ASP ILE ASP ARG TRP GLN SER SEQRES 4 A 594 THR SER VAL ASN ASP VAL LEU ARG ARG LEU PRO GLY VAL SEQRES 5 A 594 ASP ILE THR GLN ASN GLY GLY SER GLY GLN LEU SER SER SEQRES 6 A 594 ILE PHE ILE ARG GLY THR ASN ALA SER HIS VAL LEU VAL SEQRES 7 A 594 LEU ILE ASP GLY VAL ARG LEU ASN LEU ALA GLY VAL SER SEQRES 8 A 594 GLY SER ALA ASP LEU SER GLN PHE PRO ILE ALA LEU VAL SEQRES 9 A 594 GLN ARG VAL GLU TYR ILE ARG GLY PRO ARG SER ALA VAL SEQRES 10 A 594 TYR GLY SER ASP ALA ILE GLY GLY VAL VAL ASN ILE ILE SEQRES 11 A 594 THR THR ARG ASP GLU PRO GLY THR GLU ILE SER ALA GLY SEQRES 12 A 594 TRP GLY SER ASN SER TYR GLN ASN TYR ASP VAL SER THR SEQRES 13 A 594 GLN GLN GLN LEU GLY ASP LYS THR ARG VAL THR LEU LEU SEQRES 14 A 594 GLY ASP TYR ALA HIS THR HIS GLY TYR ASP VAL VAL ALA SEQRES 15 A 594 TYR GLY ASN THR GLY THR GLN ALA GLN THR ASP ASN ASP SEQRES 16 A 594 GLY PHE LEU SER LYS THR LEU TYR GLY ALA LEU GLU HIS SEQRES 17 A 594 ASN PHE THR ASP ALA TRP SER GLY PHE VAL ARG GLY TYR SEQRES 18 A 594 GLY TYR ASP ASN ARG THR ASN TYR ASP ALA TYR TYR SER SEQRES 19 A 594 PRO GLY SER PRO LEU LEU ASP THR ARG LYS LEU TYR SER SEQRES 20 A 594 GLN SER TRP ASP ALA GLY LEU ARG TYR ASN GLY GLU LEU SEQRES 21 A 594 ILE LYS SER GLN LEU ILE THR SER TYR SER HIS SER LYS SEQRES 22 A 594 ASP TYR ASN TYR ASP PRO HIS TYR GLY ARG TYR ASP SER SEQRES 23 A 594 SER ALA THR LEU ASP GLU MET LYS GLN TYR THR VAL GLN SEQRES 24 A 594 TRP ALA ASN ASN VAL ILE VAL GLY HIS GLY SER ILE GLY SEQRES 25 A 594 ALA GLY VAL ASP TRP GLN LYS GLN THR THR THR PRO GLY SEQRES 26 A 594 THR GLY TYR VAL GLU ASP GLY TYR ASP GLN ARG ASN THR SEQRES 27 A 594 GLY ILE TYR LEU THR GLY LEU GLN GLN VAL GLY ASP PHE SEQRES 28 A 594 THR PHE GLU GLY ALA ALA ARG SER ASP ASP ASN SER GLN SEQRES 29 A 594 PHE GLY ARG HIS GLY THR TRP GLN THR SER ALA GLY TRP SEQRES 30 A 594 GLU PHE ILE GLU GLY TYR ARG PHE ILE ALA SER TYR GLY SEQRES 31 A 594 THR SER TYR LYS ALA PRO ASN LEU GLY GLN LEU TYR GLY SEQRES 32 A 594 PHE TYR GLY ASN PRO ASN LEU ASP PRO GLU LYS SER LYS SEQRES 33 A 594 GLN TRP GLU GLY ALA PHE GLU GLY LEU THR ALA GLY VAL SEQRES 34 A 594 ASN TRP ARG ILE SER GLY TYR ARG ASN ASP VAL SER ASP SEQRES 35 A 594 LEU ILE ASP TYR ASP ASP HIS THR LEU LYS TYR TYR ASN SEQRES 36 A 594 GLU GLY LYS ALA ARG ILE LYS GLY VAL GLU ALA THR ALA SEQRES 37 A 594 ASN PHE ASP THR GLY PRO LEU THR HIS THR VAL SER TYR SEQRES 38 A 594 ASP TYR VAL ASP ALA ARG ASN ALA ILE THR ASP THR PRO SEQRES 39 A 594 LEU LEU ARG ARG ALA LYS GLN GLN VAL LYS TYR GLN LEU SEQRES 40 A 594 ASP TRP GLN LEU TYR ASP PHE ASP TRP GLY ILE THR TYR SEQRES 41 A 594 GLN TYR LEU GLY THR ARG TYR ASP LYS ASP TYR SER SER SEQRES 42 A 594 TYR PRO TYR GLN THR VAL LYS MET GLY GLY VAL SER LEU SEQRES 43 A 594 TRP ASP LEU ALA VAL ALA TYR PRO VAL THR SER HIS LEU SEQRES 44 A 594 THR VAL ARG GLY LYS ILE ALA ASN LEU PHE ASP LYS ASP SEQRES 45 A 594 TYR GLU THR VAL TYR GLY TYR GLN THR ALA GLY ARG GLU SEQRES 46 A 594 TYR THR LEU SER GLY SER TYR THR PHE SEQRES 1 B 135 HIS PRO VAL GLU ALA ALA GLU ARG ASN TYR GLU ARG ALA SEQRES 2 B 135 ARG ALA GLU LEU ASN GLN ALA ASN GLU ASP VAL ALA ARG SEQRES 3 B 135 ASN GLN GLU ARG GLN ALA LYS ALA VAL GLN VAL TYR ASN SEQRES 4 B 135 SER ARG LYS SER GLU LEU ASP ALA ALA ASN LYS THR LEU SEQRES 5 B 135 ALA ASP ALA ILE ALA GLU ILE LYS GLN PHE ASN ARG PHE SEQRES 6 B 135 ALA HIS ASP PRO MET ALA GLY GLY HIS ARG MET TRP GLN SEQRES 7 B 135 MET ALA GLY LEU LYS ALA GLN ARG ALA GLN THR ASP VAL SEQRES 8 B 135 ASN ASN LYS GLN ALA ALA PHE ASP ALA ALA ALA LYS GLU SEQRES 9 B 135 LYS SER ASP ALA ASP ALA ALA LEU SER SER ALA MET GLU SEQRES 10 B 135 SER ARG LYS LYS LYS GLU ASP LYS LYS ARG SER ALA GLU SEQRES 11 B 135 ASN ASN LEU ASN ASP HET GP1 A 801 16 HET GP1 A 811 16 HET LIM A 812 17 HET LDA A 601 16 HET LDA A 602 16 HET LDA A 603 16 HET LDA A 604 16 HET LDA A 605 16 HET LDA A 606 16 HET LDA A 607 16 HET AAE A 802 6 HET LIM A 803 17 HET GOL A 701 6 HET GOL A 702 6 HET GOL A 703 6 HET GOL A 704 6 HET GOL A 705 6 HET GOL A 706 6 HET GOL A 707 6 HET GOL A 708 6 HETNAM GP1 2-AMINO-2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE HETNAM LIM 3-OXO-PENTADECANOIC ACID HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETNAM AAE ACETOACETIC ACID HETNAM GOL GLYCEROL HETSYN GP1 GLUCOSAMINE 1-PHOSPHATE; 1-O-PHOSPHONO-ALPHA-D- HETSYN 2 GP1 GLUCOSAMINE; 2-AMINO-2-DEOXY-1-O-PHOSPHONO-ALPHA-D- HETSYN 3 GP1 GLUCOSE; 2-AMINO-2-DEOXY-1-O-PHOSPHONO-D-GLUCOSE; 2- HETSYN 4 GP1 AMINO-2-DEOXY-1-O-PHOSPHONO-GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GP1 2(C6 H14 N O8 P) FORMUL 5 LIM 2(C15 H28 O3) FORMUL 6 LDA 7(C14 H31 N O) FORMUL 13 AAE C4 H6 O3 FORMUL 15 GOL 8(C3 H8 O3) FORMUL 23 HOH *10(H2 O) HELIX 1 1 ARG A 31 GLN A 38 1 8 HELIX 2 2 SER A 41 ARG A 47 1 7 HELIX 3 3 ASN A 72 VAL A 76 5 5 HELIX 4 4 ASN A 86 GLY A 89 5 4 HELIX 5 5 PRO A 100 VAL A 104 5 5 HELIX 6 6 ARG A 114 GLY A 119 1 6 HELIX 7 7 ASN A 397 GLY A 403 1 7 HELIX 8 8 ARG B 327 GLN B 332 1 6 HELIX 9 9 GLN B 332 PHE B 375 1 44 HELIX 10 10 ASN B 376 ALA B 379 5 4 HELIX 11 11 GLY B 386 GLU B 436 1 51 SHEET 1 A 2 LEU A 8 VAL A 9 0 SHEET 2 A 2 GLN A 17 PRO A 18 -1 O GLN A 17 N VAL A 9 SHEET 1 B 5 THR A 26 THR A 30 0 SHEET 2 B 5 ARG A 106 ARG A 111 -1 O VAL A 107 N VAL A 29 SHEET 3 B 5 GLY A 125 ILE A 130 -1 O ASN A 128 N GLU A 108 SHEET 4 B 5 LEU A 77 ILE A 80 1 N LEU A 77 O VAL A 127 SHEET 5 B 5 VAL A 83 ARG A 84 -1 O VAL A 83 N ILE A 80 SHEET 1 C 2 VAL A 52 GLN A 56 0 SHEET 2 C 2 SER A 64 ILE A 68 -1 O SER A 65 N THR A 55 SHEET 1 D26 ALA A 459 THR A 472 0 SHEET 2 D26 LEU A 475 HIS A 477 -1 O LEU A 475 N THR A 472 SHEET 3 D26 GLN A 501 LEU A 511 -1 O ASP A 508 N THR A 476 SHEET 4 D26 ALA A 459 THR A 472 0 SHEET 5 D26 VAL A 429 SER A 441 -1 N ARG A 432 O THR A 467 SHEET 6 D26 GLU A 413 THR A 426 -1 N GLY A 420 O GLY A 435 SHEET 7 D26 TYR A 383 LYS A 394 -1 N GLY A 390 O GLN A 417 SHEET 8 D26 GLY A 366 ILE A 380 -1 N ALA A 375 O ALA A 387 SHEET 9 D26 PHE A 351 ASN A 362 -1 N ASN A 362 O GLY A 366 SHEET 10 D26 ASP A 334 VAL A 348 -1 N ILE A 340 O SER A 359 SHEET 11 D26 GLY A 309 THR A 322 -1 N GLY A 312 O THR A 343 SHEET 12 D26 THR A 289 ILE A 305 -1 N TYR A 296 O LYS A 319 SHEET 13 D26 ILE A 261 TYR A 277 -1 N LYS A 262 O ASN A 303 SHEET 14 D26 THR A 242 ASN A 257 -1 N TRP A 250 O TYR A 269 SHEET 15 D26 TRP A 214 ASN A 228 -1 N SER A 215 O ARG A 255 SHEET 16 D26 LEU A 198 ASN A 209 -1 N GLY A 204 O GLY A 220 SHEET 17 D26 THR A 164 HIS A 174 -1 N ALA A 173 O SER A 199 SHEET 18 D26 TYR A 149 GLN A 159 -1 N VAL A 154 O GLY A 170 SHEET 19 D26 GLY A 137 GLY A 145 -1 N GLU A 139 O SER A 155 SHEET 20 D26 GLU A 585 PHE A 594 -1 O TYR A 592 N ILE A 140 SHEET 21 D26 LEU A 559 ALA A 566 -1 N ARG A 562 O SER A 589 SHEET 22 D26 VAL A 544 PRO A 554 -1 N LEU A 549 O ILE A 565 SHEET 23 D26 PHE A 514 LEU A 523 -1 N ASP A 515 O ALA A 552 SHEET 24 D26 GLN A 501 LEU A 511 -1 N LEU A 511 O PHE A 514 SHEET 25 D26 SER A 480 ASN A 488 -1 N ASP A 482 O GLN A 502 SHEET 26 D26 GLN A 501 LEU A 511 -1 O GLN A 502 N ASP A 482 SHEET 1 E 2 ASP A 445 ASP A 447 0 SHEET 2 E 2 LYS A 452 TYR A 454 -1 O TYR A 454 N ASP A 445 SHEET 1 F 2 ARG A 526 TYR A 527 0 SHEET 2 F 2 LYS A 540 MET A 541 -1 O MET A 541 N ARG A 526 LINK O3 GP1 A 801 C2 AAE A 802 1555 1555 1.42 LINK N2 GP1 A 801 C1J LIM A 803 1555 1555 1.49 LINK N2 GP1 A 811 C1J LIM A 812 1555 1555 1.49 CISPEP 1 TYR A 534 PRO A 535 0 -3.49 CRYST1 76.933 80.098 233.595 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012998 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004281 0.00000