HEADER OXIDOREDUCTASE 25-SEP-03 1UM9 TITLE BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS THERMOPHILUS TITLE 2 HB8 IN APO-FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXO ACID DEHYDROGENASE ALPHA SUBUNIT; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: E1-ALPHA; COMPND 5 EC: 1.2.4.4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 2-OXO ACID DEHYDROGENASE BETA SUBUNIT; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: E1-BETA; COMPND 11 EC: 1.2.4.4; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BLR(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PACYC184; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 11 ORGANISM_TAXID: 274; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BLR(DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS ALPHA(2)BETA(2) TETRAMER, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.NAKAI,N.NAKAGAWA,N.MAOKA,R.MASUI,S.KURAMITSU,N.KAMIYA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 25-OCT-23 1UM9 1 REMARK REVDAT 2 24-FEB-09 1UM9 1 VERSN REVDAT 1 30-MAR-04 1UM9 0 JRNL AUTH T.NAKAI,N.NAKAGAWA,N.MAOKA,R.MASUI,S.KURAMITSU,N.KAMIYA JRNL TITL LIGAND-INDUCED CONFORMATIONAL CHANGES AND A REACTION JRNL TITL 2 INTERMEDIATE IN BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) JRNL TITL 3 FROM THERMUS THERMOPHILUS HB8, AS REVEALED BY X-RAY JRNL TITL 4 CRYSTALLOGRAPHY JRNL REF J.MOL.BIOL. V. 337 1011 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15033367 JRNL DOI 10.1016/J.JMB.2004.02.011 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3993653.580 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 108052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5391 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 16841 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 857 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10181 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 717 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.59000 REMARK 3 B22 (A**2) : -4.86000 REMARK 3 B33 (A**2) : -1.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 51.02 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000005983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108074 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.30100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1DTW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, SODIUM CITRATE, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.63750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.63750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 63.64200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 122.84500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 63.64200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 122.84500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.63750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 63.64200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 122.84500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.63750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 63.64200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 122.84500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS AN ALPHA(2)BETA(2) TETRAMER IN REMARK 300 THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -147.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 TYR A 206 REMARK 465 ALA A 207 REMARK 465 ILE A 208 REMARK 465 SER A 209 REMARK 465 VAL A 210 REMARK 465 ASP A 211 REMARK 465 TYR A 212 REMARK 465 ARG A 213 REMARK 465 HIS A 214 REMARK 465 GLN A 215 REMARK 465 THR A 216 REMARK 465 HIS A 217 REMARK 465 SER A 218 REMARK 465 SER A 274 REMARK 465 SER A 275 REMARK 465 ALA A 276 REMARK 465 ASP A 277 REMARK 465 ASP A 278 REMARK 465 ASP A 279 REMARK 465 SER A 280 REMARK 465 ARG A 281 REMARK 465 TYR A 282 REMARK 465 ARG A 283 REMARK 465 PRO A 284 REMARK 465 LYS A 285 REMARK 465 GLU A 286 REMARK 465 GLU A 287 REMARK 465 VAL A 288 REMARK 465 ALA A 289 REMARK 465 PHE A 290 REMARK 465 TRP A 291 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 LYS C 3 REMARK 465 GLU C 4 REMARK 465 THR C 5 REMARK 465 HIS C 6 REMARK 465 TYR C 206 REMARK 465 ALA C 207 REMARK 465 ILE C 208 REMARK 465 SER C 209 REMARK 465 VAL C 210 REMARK 465 ASP C 211 REMARK 465 TYR C 212 REMARK 465 ARG C 213 REMARK 465 HIS C 214 REMARK 465 GLN C 215 REMARK 465 THR C 216 REMARK 465 HIS C 217 REMARK 465 SER C 218 REMARK 465 ASP C 279 REMARK 465 SER C 280 REMARK 465 ARG C 281 REMARK 465 TYR C 282 REMARK 465 ARG C 283 REMARK 465 PRO C 284 REMARK 465 LYS C 285 REMARK 465 GLU C 286 REMARK 465 GLU C 287 REMARK 465 VAL C 288 REMARK 465 ALA C 289 REMARK 465 PHE C 290 REMARK 465 TRP C 291 REMARK 465 MET D 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 292 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 ASP C 277 CG OD1 OD2 REMARK 470 ASP C 278 CG OD1 OD2 REMARK 470 ARG C 292 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 293 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 130 34.78 71.49 REMARK 500 PRO A 145 151.00 -44.89 REMARK 500 THR A 178 1.92 -67.80 REMARK 500 ARG B 52 -37.37 -133.49 REMARK 500 HIS B 129 25.39 -140.17 REMARK 500 SER B 130 -15.23 -143.75 REMARK 500 ARG B 237 -57.90 65.67 REMARK 500 ASP C 97 31.14 -92.29 REMARK 500 PRO C 129 156.99 -47.47 REMARK 500 GLU C 130 31.06 70.94 REMARK 500 ASP C 277 1.59 -57.81 REMARK 500 VAL D 123 -4.31 -142.57 REMARK 500 ARG D 124 53.32 82.39 REMARK 500 HIS D 129 13.26 -152.66 REMARK 500 SER D 130 -4.49 -143.10 REMARK 500 ARG D 237 -68.66 66.79 REMARK 500 ASP D 243 80.33 -68.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 2402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UMB RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN HOLO-FORM REMARK 900 RELATED ID: 1UMC RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH 4-METHYLPENTANOATE REMARK 900 RELATED ID: 1UMD RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH 4-METHYL-2-OXOPENTANOATE AS AN INTERMEDIATE REMARK 900 RELATED ID: TTK003000456.1 RELATED DB: TARGETDB DBREF 1UM9 A 1 367 UNP P84129 P84129_THETH 1 367 DBREF 1UM9 B 1 324 UNP P84130 P84130_THETH 1 324 DBREF 1UM9 C 1 367 UNP P84129 P84129_THETH 1 367 DBREF 1UM9 D 1 324 UNP P84130 P84130_THETH 1 324 SEQRES 1 A 367 MET VAL LYS GLU THR HIS ARG PHE GLU THR PHE THR GLU SEQRES 2 A 367 GLU PRO ILE ARG LEU ILE GLY GLU GLU GLY GLU TRP LEU SEQRES 3 A 367 GLY ASP PHE PRO LEU ASP LEU GLU GLY GLU LYS LEU ARG SEQRES 4 A 367 ARG LEU TYR ARG ASP MET LEU ALA ALA ARG MET LEU ASP SEQRES 5 A 367 GLU ARG TYR THR ILE LEU ILE ARG THR GLY LYS THR SER SEQRES 6 A 367 PHE ILE ALA PRO ALA ALA GLY HIS GLU ALA ALA GLN VAL SEQRES 7 A 367 ALA ILE ALA HIS ALA ILE ARG PRO GLY PHE ASP TRP VAL SEQRES 8 A 367 PHE PRO TYR TYR ARG ASP HIS GLY LEU ALA LEU ALA LEU SEQRES 9 A 367 GLY ILE PRO LEU LYS GLU LEU LEU GLY GLN MET LEU ALA SEQRES 10 A 367 THR LYS ALA ASP PRO ASN LYS GLY ARG GLN MET PRO GLU SEQRES 11 A 367 HIS PRO GLY SER LYS ALA LEU ASN PHE PHE THR VAL ALA SEQRES 12 A 367 SER PRO ILE ALA SER HIS VAL PRO PRO ALA ALA GLY ALA SEQRES 13 A 367 ALA ILE SER MET LYS LEU LEU ARG THR GLY GLN VAL ALA SEQRES 14 A 367 VAL CYS THR PHE GLY ASP GLY ALA THR SER GLU GLY ASP SEQRES 15 A 367 TRP TYR ALA GLY ILE ASN PHE ALA ALA VAL GLN GLY ALA SEQRES 16 A 367 PRO ALA VAL PHE ILE ALA GLU ASN ASN PHE TYR ALA ILE SEQRES 17 A 367 SER VAL ASP TYR ARG HIS GLN THR HIS SER PRO THR ILE SEQRES 18 A 367 ALA ASP LYS ALA HIS ALA PHE GLY ILE PRO GLY TYR LEU SEQRES 19 A 367 VAL ASP GLY MET ASP VAL LEU ALA SER TYR TYR VAL VAL SEQRES 20 A 367 LYS GLU ALA VAL GLU ARG ALA ARG ARG GLY GLU GLY PRO SEQRES 21 A 367 SER LEU VAL GLU LEU ARG VAL TYR ARG TYR GLY PRO HIS SEQRES 22 A 367 SER SER ALA ASP ASP ASP SER ARG TYR ARG PRO LYS GLU SEQRES 23 A 367 GLU VAL ALA PHE TRP ARG LYS LYS ASP PRO ILE PRO ARG SEQRES 24 A 367 PHE ARG ARG PHE LEU GLU ALA ARG GLY LEU TRP ASN GLU SEQRES 25 A 367 GLU TRP GLU GLU ASP VAL ARG GLU GLU ILE ARG ALA GLU SEQRES 26 A 367 LEU GLU ARG GLY LEU LYS GLU ALA GLU GLU ALA GLY PRO SEQRES 27 A 367 VAL PRO PRO GLU TRP MET PHE GLU ASP VAL PHE ALA GLU SEQRES 28 A 367 LYS PRO TRP HIS LEU LEU ARG GLN GLU ALA LEU LEU LYS SEQRES 29 A 367 GLU GLU LEU SEQRES 1 B 324 MET ALA LEU MET THR MET VAL GLN ALA LEU ASN ARG ALA SEQRES 2 B 324 LEU ASP GLU GLU MET ALA LYS ASP PRO ARG VAL VAL VAL SEQRES 3 B 324 LEU GLY GLU ASP VAL GLY LYS ARG GLY GLY VAL PHE LEU SEQRES 4 B 324 VAL THR GLU GLY LEU LEU GLN LYS TYR GLY PRO ASP ARG SEQRES 5 B 324 VAL MET ASP THR PRO LEU SER GLU ALA ALA ILE VAL GLY SEQRES 6 B 324 ALA ALA LEU GLY MET ALA ALA HIS GLY LEU ARG PRO VAL SEQRES 7 B 324 ALA GLU ILE GLN PHE ALA ASP TYR ILE PHE PRO GLY PHE SEQRES 8 B 324 ASP GLN LEU VAL SER GLN VAL ALA LYS LEU ARG TYR ARG SEQRES 9 B 324 SER GLY GLY GLN PHE THR ALA PRO LEU VAL VAL ARG MET SEQRES 10 B 324 PRO SER GLY GLY GLY VAL ARG GLY GLY HIS HIS HIS SER SEQRES 11 B 324 GLN SER PRO GLU ALA HIS PHE VAL HIS THR ALA GLY LEU SEQRES 12 B 324 LYS VAL VAL ALA VAL SER THR PRO TYR ASP ALA LYS GLY SEQRES 13 B 324 LEU LEU LYS ALA ALA ILE ARG ASP GLU ASP PRO VAL VAL SEQRES 14 B 324 PHE LEU GLU PRO LYS ARG LEU TYR ARG SER VAL LYS GLU SEQRES 15 B 324 GLU VAL PRO GLU GLU ASP TYR THR LEU PRO ILE GLY LYS SEQRES 16 B 324 ALA ALA LEU ARG ARG GLU GLY LYS ASP LEU THR LEU ILE SEQRES 17 B 324 CYS TYR GLY THR VAL MET PRO GLU VAL LEU GLN ALA ALA SEQRES 18 B 324 ALA GLU LEU ALA LYS ALA GLY VAL SER ALA GLU VAL LEU SEQRES 19 B 324 ASP LEU ARG THR LEU MET PRO TRP ASP TYR GLU ALA VAL SEQRES 20 B 324 MET ASN SER VAL ALA LYS THR GLY ARG VAL VAL LEU VAL SEQRES 21 B 324 SER ASP ALA PRO ARG HIS ALA SER PHE VAL SER GLU VAL SEQRES 22 B 324 ALA ALA THR ILE ALA GLU ASP LEU LEU ASP MET LEU LEU SEQRES 23 B 324 ALA PRO PRO ILE ARG VAL THR GLY PHE ASP THR PRO TYR SEQRES 24 B 324 PRO TYR ALA GLN ASP LYS LEU TYR LEU PRO THR VAL THR SEQRES 25 B 324 ARG ILE LEU ASN ALA ALA LYS ARG ALA LEU ASP TYR SEQRES 1 C 367 MET VAL LYS GLU THR HIS ARG PHE GLU THR PHE THR GLU SEQRES 2 C 367 GLU PRO ILE ARG LEU ILE GLY GLU GLU GLY GLU TRP LEU SEQRES 3 C 367 GLY ASP PHE PRO LEU ASP LEU GLU GLY GLU LYS LEU ARG SEQRES 4 C 367 ARG LEU TYR ARG ASP MET LEU ALA ALA ARG MET LEU ASP SEQRES 5 C 367 GLU ARG TYR THR ILE LEU ILE ARG THR GLY LYS THR SER SEQRES 6 C 367 PHE ILE ALA PRO ALA ALA GLY HIS GLU ALA ALA GLN VAL SEQRES 7 C 367 ALA ILE ALA HIS ALA ILE ARG PRO GLY PHE ASP TRP VAL SEQRES 8 C 367 PHE PRO TYR TYR ARG ASP HIS GLY LEU ALA LEU ALA LEU SEQRES 9 C 367 GLY ILE PRO LEU LYS GLU LEU LEU GLY GLN MET LEU ALA SEQRES 10 C 367 THR LYS ALA ASP PRO ASN LYS GLY ARG GLN MET PRO GLU SEQRES 11 C 367 HIS PRO GLY SER LYS ALA LEU ASN PHE PHE THR VAL ALA SEQRES 12 C 367 SER PRO ILE ALA SER HIS VAL PRO PRO ALA ALA GLY ALA SEQRES 13 C 367 ALA ILE SER MET LYS LEU LEU ARG THR GLY GLN VAL ALA SEQRES 14 C 367 VAL CYS THR PHE GLY ASP GLY ALA THR SER GLU GLY ASP SEQRES 15 C 367 TRP TYR ALA GLY ILE ASN PHE ALA ALA VAL GLN GLY ALA SEQRES 16 C 367 PRO ALA VAL PHE ILE ALA GLU ASN ASN PHE TYR ALA ILE SEQRES 17 C 367 SER VAL ASP TYR ARG HIS GLN THR HIS SER PRO THR ILE SEQRES 18 C 367 ALA ASP LYS ALA HIS ALA PHE GLY ILE PRO GLY TYR LEU SEQRES 19 C 367 VAL ASP GLY MET ASP VAL LEU ALA SER TYR TYR VAL VAL SEQRES 20 C 367 LYS GLU ALA VAL GLU ARG ALA ARG ARG GLY GLU GLY PRO SEQRES 21 C 367 SER LEU VAL GLU LEU ARG VAL TYR ARG TYR GLY PRO HIS SEQRES 22 C 367 SER SER ALA ASP ASP ASP SER ARG TYR ARG PRO LYS GLU SEQRES 23 C 367 GLU VAL ALA PHE TRP ARG LYS LYS ASP PRO ILE PRO ARG SEQRES 24 C 367 PHE ARG ARG PHE LEU GLU ALA ARG GLY LEU TRP ASN GLU SEQRES 25 C 367 GLU TRP GLU GLU ASP VAL ARG GLU GLU ILE ARG ALA GLU SEQRES 26 C 367 LEU GLU ARG GLY LEU LYS GLU ALA GLU GLU ALA GLY PRO SEQRES 27 C 367 VAL PRO PRO GLU TRP MET PHE GLU ASP VAL PHE ALA GLU SEQRES 28 C 367 LYS PRO TRP HIS LEU LEU ARG GLN GLU ALA LEU LEU LYS SEQRES 29 C 367 GLU GLU LEU SEQRES 1 D 324 MET ALA LEU MET THR MET VAL GLN ALA LEU ASN ARG ALA SEQRES 2 D 324 LEU ASP GLU GLU MET ALA LYS ASP PRO ARG VAL VAL VAL SEQRES 3 D 324 LEU GLY GLU ASP VAL GLY LYS ARG GLY GLY VAL PHE LEU SEQRES 4 D 324 VAL THR GLU GLY LEU LEU GLN LYS TYR GLY PRO ASP ARG SEQRES 5 D 324 VAL MET ASP THR PRO LEU SER GLU ALA ALA ILE VAL GLY SEQRES 6 D 324 ALA ALA LEU GLY MET ALA ALA HIS GLY LEU ARG PRO VAL SEQRES 7 D 324 ALA GLU ILE GLN PHE ALA ASP TYR ILE PHE PRO GLY PHE SEQRES 8 D 324 ASP GLN LEU VAL SER GLN VAL ALA LYS LEU ARG TYR ARG SEQRES 9 D 324 SER GLY GLY GLN PHE THR ALA PRO LEU VAL VAL ARG MET SEQRES 10 D 324 PRO SER GLY GLY GLY VAL ARG GLY GLY HIS HIS HIS SER SEQRES 11 D 324 GLN SER PRO GLU ALA HIS PHE VAL HIS THR ALA GLY LEU SEQRES 12 D 324 LYS VAL VAL ALA VAL SER THR PRO TYR ASP ALA LYS GLY SEQRES 13 D 324 LEU LEU LYS ALA ALA ILE ARG ASP GLU ASP PRO VAL VAL SEQRES 14 D 324 PHE LEU GLU PRO LYS ARG LEU TYR ARG SER VAL LYS GLU SEQRES 15 D 324 GLU VAL PRO GLU GLU ASP TYR THR LEU PRO ILE GLY LYS SEQRES 16 D 324 ALA ALA LEU ARG ARG GLU GLY LYS ASP LEU THR LEU ILE SEQRES 17 D 324 CYS TYR GLY THR VAL MET PRO GLU VAL LEU GLN ALA ALA SEQRES 18 D 324 ALA GLU LEU ALA LYS ALA GLY VAL SER ALA GLU VAL LEU SEQRES 19 D 324 ASP LEU ARG THR LEU MET PRO TRP ASP TYR GLU ALA VAL SEQRES 20 D 324 MET ASN SER VAL ALA LYS THR GLY ARG VAL VAL LEU VAL SEQRES 21 D 324 SER ASP ALA PRO ARG HIS ALA SER PHE VAL SER GLU VAL SEQRES 22 D 324 ALA ALA THR ILE ALA GLU ASP LEU LEU ASP MET LEU LEU SEQRES 23 D 324 ALA PRO PRO ILE ARG VAL THR GLY PHE ASP THR PRO TYR SEQRES 24 D 324 PRO TYR ALA GLN ASP LYS LEU TYR LEU PRO THR VAL THR SEQRES 25 D 324 ARG ILE LEU ASN ALA ALA LYS ARG ALA LEU ASP TYR HET SO4 A1402 5 HET SO4 C2402 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *717(H2 O) HELIX 1 1 GLU A 34 THR A 61 1 28 HELIX 2 2 HIS A 73 ILE A 84 1 12 HELIX 3 3 ASP A 97 GLY A 105 1 9 HELIX 4 4 PRO A 107 ALA A 117 1 11 HELIX 5 5 HIS A 149 LEU A 163 1 15 HELIX 6 6 ASP A 175 SER A 179 5 5 HELIX 7 7 GLU A 180 GLY A 194 1 15 HELIX 8 8 ILE A 221 PHE A 228 5 8 HELIX 9 9 ASP A 239 ARG A 256 1 18 HELIX 10 10 ASP A 295 ALA A 306 1 12 HELIX 11 11 ASN A 311 GLU A 335 1 25 HELIX 12 12 PRO A 340 GLU A 346 5 7 HELIX 13 13 PRO A 353 LEU A 367 1 15 HELIX 14 14 THR B 5 ASP B 21 1 17 HELIX 15 15 GLY B 43 GLY B 49 1 7 HELIX 16 16 SER B 59 GLY B 74 1 16 HELIX 17 17 PHE B 83 PRO B 89 5 7 HELIX 18 18 GLY B 90 GLN B 97 1 8 HELIX 19 19 LYS B 100 SER B 105 1 6 HELIX 20 20 GLY B 125 HIS B 129 5 5 HELIX 21 21 PRO B 133 HIS B 139 1 7 HELIX 22 22 THR B 150 ASP B 164 1 15 HELIX 23 23 ARG B 175 TYR B 177 5 3 HELIX 24 24 TYR B 210 THR B 212 5 3 HELIX 25 25 VAL B 213 ALA B 227 1 15 HELIX 26 26 ASP B 243 GLY B 255 1 13 HELIX 27 27 SER B 268 LEU B 282 1 15 HELIX 28 28 ASP B 283 LEU B 285 5 3 HELIX 29 29 GLN B 303 LEU B 308 1 6 HELIX 30 30 THR B 310 TYR B 324 1 15 HELIX 31 31 GLU C 34 THR C 61 1 28 HELIX 32 32 HIS C 73 ILE C 84 1 12 HELIX 33 33 ASP C 97 GLY C 105 1 9 HELIX 34 34 PRO C 107 ALA C 117 1 11 HELIX 35 35 HIS C 149 LEU C 163 1 15 HELIX 36 36 ASP C 175 SER C 179 5 5 HELIX 37 37 GLU C 180 GLY C 194 1 15 HELIX 38 38 ILE C 221 PHE C 228 5 8 HELIX 39 39 ASP C 239 ARG C 256 1 18 HELIX 40 40 ASP C 295 ARG C 307 1 13 HELIX 41 41 ASN C 311 ALA C 336 1 26 HELIX 42 42 PRO C 340 GLU C 346 5 7 HELIX 43 43 PRO C 353 GLU C 365 1 13 HELIX 44 44 THR D 5 ASP D 21 1 17 HELIX 45 45 GLY D 43 GLY D 49 1 7 HELIX 46 46 SER D 59 GLY D 74 1 16 HELIX 47 47 PHE D 83 PRO D 89 5 7 HELIX 48 48 GLY D 90 GLN D 97 1 8 HELIX 49 49 LYS D 100 SER D 105 1 6 HELIX 50 50 PRO D 133 HIS D 139 1 7 HELIX 51 51 THR D 150 ASP D 164 1 15 HELIX 52 52 ARG D 175 TYR D 177 5 3 HELIX 53 53 TYR D 210 THR D 212 5 3 HELIX 54 54 VAL D 213 ALA D 227 1 15 HELIX 55 55 ASP D 243 GLY D 255 1 13 HELIX 56 56 SER D 268 LEU D 282 1 15 HELIX 57 57 ASP D 283 LEU D 285 5 3 HELIX 58 58 GLN D 303 LEU D 308 1 6 HELIX 59 59 THR D 310 TYR D 324 1 15 SHEET 1 A 5 TRP A 90 PHE A 92 0 SHEET 2 A 5 ALA A 169 PHE A 173 1 O VAL A 170 N TRP A 90 SHEET 3 A 5 ALA A 197 ASN A 204 1 O ILE A 200 N CYS A 171 SHEET 4 A 5 SER A 261 VAL A 267 1 O VAL A 263 N PHE A 199 SHEET 5 A 5 GLY A 232 ASP A 236 1 N TYR A 233 O GLU A 264 SHEET 1 B 2 LEU B 3 MET B 4 0 SHEET 2 B 2 GLU B 182 GLU B 183 -1 O GLU B 182 N MET B 4 SHEET 1 C 7 VAL B 53 ASP B 55 0 SHEET 2 C 7 VAL B 24 GLY B 28 1 N VAL B 26 O MET B 54 SHEET 3 C 7 ARG B 76 GLU B 80 1 O VAL B 78 N VAL B 25 SHEET 4 C 7 VAL B 114 SER B 119 1 O ARG B 116 N ALA B 79 SHEET 5 C 7 VAL B 168 PRO B 173 1 O PHE B 170 N VAL B 115 SHEET 6 C 7 LYS B 144 ALA B 147 1 N VAL B 146 O LEU B 171 SHEET 7 C 7 THR B 238 MET B 240 -1 O LEU B 239 N VAL B 145 SHEET 1 D 5 ALA B 197 ARG B 200 0 SHEET 2 D 5 ALA B 231 ASP B 235 -1 O ASP B 235 N ALA B 197 SHEET 3 D 5 LEU B 205 CYS B 209 1 N LEU B 205 O GLU B 232 SHEET 4 D 5 VAL B 257 PRO B 264 1 O VAL B 260 N ILE B 208 SHEET 5 D 5 ILE B 290 GLY B 294 1 O VAL B 292 N LEU B 259 SHEET 1 E 2 PHE C 66 ILE C 67 0 SHEET 2 E 2 SER C 275 ALA C 276 -1 O SER C 275 N ILE C 67 SHEET 1 F 5 TRP C 90 PHE C 92 0 SHEET 2 F 5 ALA C 169 PHE C 173 1 O VAL C 170 N TRP C 90 SHEET 3 F 5 ALA C 197 ASN C 204 1 O ILE C 200 N CYS C 171 SHEET 4 F 5 SER C 261 VAL C 267 1 O LEU C 265 N ALA C 201 SHEET 5 F 5 GLY C 232 ASP C 236 1 N TYR C 233 O GLU C 264 SHEET 1 G 2 LEU D 3 MET D 4 0 SHEET 2 G 2 GLU D 182 GLU D 183 -1 O GLU D 182 N MET D 4 SHEET 1 H 7 VAL D 53 ASP D 55 0 SHEET 2 H 7 VAL D 24 GLY D 28 1 N VAL D 26 O MET D 54 SHEET 3 H 7 ARG D 76 GLU D 80 1 O VAL D 78 N VAL D 25 SHEET 4 H 7 VAL D 114 SER D 119 1 O VAL D 114 N ALA D 79 SHEET 5 H 7 VAL D 168 PRO D 173 1 O GLU D 172 N MET D 117 SHEET 6 H 7 LYS D 144 ALA D 147 1 N VAL D 146 O LEU D 171 SHEET 7 H 7 THR D 238 MET D 240 -1 O LEU D 239 N VAL D 145 SHEET 1 I 5 ALA D 197 ARG D 200 0 SHEET 2 I 5 ALA D 231 ASP D 235 -1 O ASP D 235 N ALA D 197 SHEET 3 I 5 LEU D 205 CYS D 209 1 N LEU D 205 O GLU D 232 SHEET 4 I 5 VAL D 257 PRO D 264 1 O VAL D 260 N ILE D 208 SHEET 5 I 5 ILE D 290 GLY D 294 1 O VAL D 292 N LEU D 259 CISPEP 1 MET B 240 PRO B 241 0 -0.14 CISPEP 2 MET D 240 PRO D 241 0 0.07 SITE 1 AC1 7 TYR A 94 TYR A 95 ARG A 96 GLY A 174 SITE 2 AC1 7 ARG A 269 HIS A 273 HOH A1458 SITE 1 AC2 8 TYR C 94 TYR C 95 ARG C 96 GLY C 174 SITE 2 AC2 8 HIS C 273 HOH C2462 HOH C2465 HOH C2607 CRYST1 127.284 245.690 137.275 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007856 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007285 0.00000