HEADER LIGASE 01-OCT-03 1UMI TITLE STRUCTURAL BASIS OF SUGAR-RECOGNIZING UBIQUITIN LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: F-BOX ONLY PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SBD DOMAIN; COMPND 5 SYNONYM: FBS1; COMPND 6 EC: 6.3.2.19; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MOUSE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS UBIQUITIN, SCF, UBIQUITIN LIGASE, LECTIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.MIZUSHIMA,T.HIRAO,Y.YOSHIDA,S.J.LEE,T.CHIBA,K.IWAI,Y.YAMAGUCHI, AUTHOR 2 K.KATO,T.TSUKIHARA,K.TANAKA REVDAT 7 27-DEC-23 1UMI 1 REMARK REVDAT 6 10-NOV-21 1UMI 1 SEQADV HETSYN LINK REVDAT 5 29-JUL-20 1UMI 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 06-NOV-19 1UMI 1 JRNL SEQADV LINK REVDAT 3 13-JUL-11 1UMI 1 VERSN REVDAT 2 24-FEB-09 1UMI 1 VERSN REVDAT 1 06-APR-04 1UMI 0 JRNL AUTH T.MIZUSHIMA,T.HIRAO,Y.YOSHIDA,S.J.LEE,T.CHIBA,K.IWAI, JRNL AUTH 2 Y.YAMAGUCHI,K.KATO,T.TSUKIHARA,K.TANAKA JRNL TITL STRUCTURAL BASIS OF SUGAR-RECOGNIZING UBIQUITIN LIGASE. JRNL REF NAT.STRUCT.MOL.BIOL. V. 11 365 2004 JRNL REFN ISSN 1545-9993 JRNL PMID 14990996 JRNL DOI 10.1038/NSMB732 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 11950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 611 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 847 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : -0.71000 REMARK 3 B33 (A**2) : 1.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.722 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1562 ; 0.043 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1312 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2124 ; 3.319 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3051 ; 1.561 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 183 ; 9.215 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 217 ; 0.281 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1781 ; 0.019 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 350 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 260 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1444 ; 0.279 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 870 ; 0.110 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 44 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.429 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 32 ; 0.345 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 907 ; 1.541 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1450 ; 2.657 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 655 ; 4.198 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 674 ; 6.281 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1UMI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000005991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11950 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 58.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.18400 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CHLORIDE, AMMONIUM SULPHATE, REMARK 280 PIPES, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.89000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.90300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.90300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.83500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.90300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.90300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.94500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.90300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.90300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 110.83500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.90300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.90300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.94500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.89000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 114 N GLY A 114 CA 0.116 REMARK 500 GLY A 114 C GLY A 114 O -0.114 REMARK 500 HIS A 116 N HIS A 116 CA 0.121 REMARK 500 PHE A 119 CG PHE A 119 CD1 0.099 REMARK 500 PHE A 119 CE1 PHE A 119 CZ 0.116 REMARK 500 LYS A 122 CG LYS A 122 CD 0.239 REMARK 500 LYS A 122 CD LYS A 122 CE 0.172 REMARK 500 LYS A 122 CE LYS A 122 NZ 0.176 REMARK 500 ARG A 125 NE ARG A 125 CZ 0.094 REMARK 500 GLU A 135 CG GLU A 135 CD 0.209 REMARK 500 GLU A 135 CD GLU A 135 OE1 0.066 REMARK 500 GLU A 135 CD GLU A 135 OE2 0.152 REMARK 500 GLU A 162 CG GLU A 162 CD 0.118 REMARK 500 GLU A 162 CD GLU A 162 OE1 0.078 REMARK 500 SER A 168 CB SER A 168 OG -0.079 REMARK 500 VAL A 169 CB VAL A 169 CG2 0.127 REMARK 500 CYS A 180 CB CYS A 180 SG -0.097 REMARK 500 ARG A 181 CZ ARG A 181 NH1 0.093 REMARK 500 GLN A 189 CG GLN A 189 CD 0.169 REMARK 500 TYR A 193 CE2 TYR A 193 CD2 0.109 REMARK 500 GLU A 195 CD GLU A 195 OE2 0.068 REMARK 500 VAL A 207 CB VAL A 207 CG1 -0.217 REMARK 500 TRP A 210 CE3 TRP A 210 CZ3 0.117 REMARK 500 TYR A 211 CE2 TYR A 211 CD2 0.113 REMARK 500 GLU A 230 CB GLU A 230 CG 0.137 REMARK 500 GLU A 230 CG GLU A 230 CD 0.193 REMARK 500 GLU A 230 CD GLU A 230 OE2 0.076 REMARK 500 GLN A 242 CB GLN A 242 CG 0.226 REMARK 500 GLN A 242 CG GLN A 242 CD 0.227 REMARK 500 SER A 277 CB SER A 277 OG -0.094 REMARK 500 TYR A 279 CE2 TYR A 279 CD2 0.154 REMARK 500 TRP A 280 CE3 TRP A 280 CZ3 0.105 REMARK 500 LYS A 281 CB LYS A 281 CG 0.314 REMARK 500 LYS A 281 CD LYS A 281 CE 0.213 REMARK 500 LYS A 281 CE LYS A 281 NZ 0.335 REMARK 500 GLU A 296 CD GLU A 296 OE1 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 116 N - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 LYS A 122 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 LYS A 122 CD - CE - NZ ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 GLU A 135 OE1 - CD - OE2 ANGL. DEV. = -8.4 DEGREES REMARK 500 LEU A 155 N - CA - C ANGL. DEV. = 21.9 DEGREES REMARK 500 LEU A 155 CA - C - O ANGL. DEV. = -16.2 DEGREES REMARK 500 LEU A 155 CA - C - N ANGL. DEV. = 30.5 DEGREES REMARK 500 LEU A 155 O - C - N ANGL. DEV. = -12.9 DEGREES REMARK 500 PRO A 156 C - N - CA ANGL. DEV. = -27.1 DEGREES REMARK 500 PRO A 156 C - N - CD ANGL. DEV. = 22.6 DEGREES REMARK 500 ASP A 158 CB - CG - OD1 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 158 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 166 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 181 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 181 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 GLU A 195 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ASP A 199 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 216 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 233 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 233 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 248 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 MET A 252 CG - SD - CE ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG A 269 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 276 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 LYS A 281 CD - CE - NZ ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 116 -69.41 121.76 REMARK 500 ASP A 136 -121.14 55.50 REMARK 500 ASN A 159 48.48 30.74 REMARK 500 GLN A 165 -46.36 -179.97 REMARK 500 ASP A 167 -17.27 -43.51 REMARK 500 SER A 176 -144.53 -119.90 REMARK 500 THR A 200 -68.77 -94.88 REMARK 500 ALA A 217 146.80 -174.67 REMARK 500 TRP A 283 75.26 -119.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 115 HIS A 116 -37.72 REMARK 500 HIS A 116 PHE A 117 146.69 REMARK 500 LEU A 155 PRO A 156 144.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UMH RELATED DB: PDB REMARK 900 1UMH CONTAINS THE SAME PROTEIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS A DIFFERENCE BETWEEN THE SEQRES REMARK 999 AND THE SEQUENCE DATABASE. REMARK 999 THE DEPOSITORS BELIEVE THAT THIS RESIDUE REMARK 999 IS VALIANT AT THIS POSITION. DBREF 1UMI A 117 297 GB 28436805 AAH46586 117 297 SEQADV 1UMI GLY A 114 GB 28436805 CLONING ARTIFACT SEQADV 1UMI SER A 115 GB 28436805 CLONING ARTIFACT SEQADV 1UMI HIS A 116 GB 28436805 CLONING ARTIFACT SEQADV 1UMI ALA A 132 GB 28436805 CYS 132 ENGINEERED MUTATION SEQADV 1UMI LYS A 151 GB 28436805 ARG 151 SEE REMARK 999 SEQRES 1 A 184 GLY SER HIS PHE TYR PHE LEU SER LYS ARG ARG ARG ASN SEQRES 2 A 184 LEU LEU ARG ASN PRO ALA GLY GLU GLU ASP LEU GLU GLY SEQRES 3 A 184 TRP SER ASP VAL GLU HIS GLY GLY ASP GLY TRP LYS VAL SEQRES 4 A 184 GLU GLU LEU PRO GLY ASP ASN GLY VAL GLU PHE THR GLN SEQRES 5 A 184 ASP ASP SER VAL LYS LYS TYR PHE ALA SER SER PHE GLU SEQRES 6 A 184 TRP CYS ARG LYS ALA GLN VAL ILE ASP LEU GLN ALA GLU SEQRES 7 A 184 GLY TYR TRP GLU GLU LEU LEU ASP THR THR GLN PRO ALA SEQRES 8 A 184 ILE VAL VAL LYS ASP TRP TYR SER GLY ARG THR ASP ALA SEQRES 9 A 184 GLY SER LEU TYR GLU LEU THR VAL ARG LEU LEU SER GLU SEQRES 10 A 184 ASN GLU ASP VAL LEU ALA GLU PHE ALA THR GLY GLN VAL SEQRES 11 A 184 ALA VAL PRO GLU ASP GLY SER TRP MET GLU ILE SER HIS SEQRES 12 A 184 THR PHE ILE ASP TYR GLY PRO GLY VAL ARG PHE VAL ARG SEQRES 13 A 184 PHE GLU HIS GLY GLY GLN ASP SER VAL TYR TRP LYS GLY SEQRES 14 A 184 TRP PHE GLY ALA ARG VAL THR ASN SER SER VAL TRP VAL SEQRES 15 A 184 GLU PRO HET NDG B 1 15 HET NAG B 2 14 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NDG C8 H15 N O6 FORMUL 2 NAG C8 H15 N O6 FORMUL 3 HOH *45(H2 O) HELIX 1 1 HIS A 116 ARG A 124 1 9 HELIX 2 2 TRP A 194 THR A 201 1 8 SHEET 1 A 5 SER A 141 HIS A 145 0 SHEET 2 A 5 CYS A 180 ASP A 187 -1 O ALA A 183 N SER A 141 SHEET 3 A 5 PHE A 267 ASP A 276 -1 O PHE A 270 N GLN A 184 SHEET 4 A 5 SER A 219 LEU A 228 -1 N LEU A 228 O PHE A 267 SHEET 5 A 5 VAL A 234 ALA A 239 -1 O LEU A 235 N LEU A 227 SHEET 1 B 5 SER A 141 HIS A 145 0 SHEET 2 B 5 CYS A 180 ASP A 187 -1 O ALA A 183 N SER A 141 SHEET 3 B 5 PHE A 267 ASP A 276 -1 O PHE A 270 N GLN A 184 SHEET 4 B 5 SER A 219 LEU A 228 -1 N LEU A 228 O PHE A 267 SHEET 5 B 5 VAL A 243 ALA A 244 -1 O VAL A 243 N TYR A 221 SHEET 1 C 5 LYS A 151 GLU A 154 0 SHEET 2 C 5 LYS A 171 ALA A 174 -1 O ALA A 174 N LYS A 151 SHEET 3 C 5 ARG A 287 GLU A 296 -1 O VAL A 288 N PHE A 173 SHEET 4 C 5 ALA A 204 SER A 212 -1 N SER A 212 O ARG A 287 SHEET 5 C 5 MET A 252 PHE A 258 -1 O HIS A 256 N VAL A 207 LINK O4 NDG B 1 C1 NAG B 2 1555 1555 1.43 CRYST1 63.806 63.806 147.780 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015673 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006767 0.00000