data_1UNJ # _entry.id 1UNJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1UNJ pdb_00001unj 10.2210/pdb1unj/pdb PDBE EBI-13477 ? ? WWPDB D_1290013477 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-12-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-07-20 4 'Structure model' 1 3 2012-11-30 5 'Structure model' 1 4 2019-03-06 6 'Structure model' 1 5 2019-05-08 7 'Structure model' 1 6 2019-05-22 8 'Structure model' 1 7 2019-07-24 9 'Structure model' 1 8 2019-10-23 10 'Structure model' 2 0 2023-11-15 11 'Structure model' 3 0 2024-07-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' 5 2 'Structure model' 'Version format compliance' 6 3 'Structure model' Other 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' Other 9 5 'Structure model' Advisory 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Derived calculations' 12 5 'Structure model' 'Experimental preparation' 13 5 'Structure model' Other 14 6 'Structure model' 'Data collection' 15 6 'Structure model' 'Experimental preparation' 16 7 'Structure model' 'Data collection' 17 7 'Structure model' 'Refinement description' 18 8 'Structure model' 'Data collection' 19 9 'Structure model' 'Data collection' 20 9 'Structure model' 'Database references' 21 9 'Structure model' Other 22 10 'Structure model' 'Atomic model' 23 10 'Structure model' 'Data collection' 24 10 'Structure model' 'Database references' 25 10 'Structure model' 'Derived calculations' 26 11 'Structure model' 'Data collection' 27 11 'Structure model' 'Derived calculations' 28 11 'Structure model' 'Non-polymer description' 29 11 'Structure model' 'Source and taxonomy' 30 11 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' exptl_crystal_grow 2 5 'Structure model' pdbx_database_proc 3 5 'Structure model' pdbx_database_status 4 5 'Structure model' pdbx_seq_map_depositor_info 5 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 5 'Structure model' pdbx_validate_polymer_linkage 7 5 'Structure model' struct_conn 8 6 'Structure model' database_PDB_rev 9 6 'Structure model' database_PDB_rev_record 10 6 'Structure model' exptl_crystal_grow 11 6 'Structure model' pdbx_seq_map_depositor_info 12 7 'Structure model' pdbx_seq_map_depositor_info 13 7 'Structure model' refine 14 8 'Structure model' diffrn_source 15 9 'Structure model' pdbx_database_status 16 9 'Structure model' struct_ref_seq_dif 17 10 'Structure model' atom_site 18 10 'Structure model' chem_comp_atom 19 10 'Structure model' chem_comp_bond 20 10 'Structure model' database_2 21 10 'Structure model' struct_conn 22 11 'Structure model' chem_comp 23 11 'Structure model' chem_comp_atom 24 11 'Structure model' chem_comp_bond 25 11 'Structure model' entity 26 11 'Structure model' pdbx_entity_src_syn 27 11 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_exptl_crystal_grow.temp' 2 5 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 5 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 6 'Structure model' '_exptl_crystal_grow.method' 6 6 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 7 7 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 8 7 'Structure model' '_refine.pdbx_ls_cross_valid_method' 9 8 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 10 9 'Structure model' '_pdbx_database_status.status_code_sf' 11 9 'Structure model' '_struct_ref_seq_dif.details' 12 10 'Structure model' '_atom_site.auth_atom_id' 13 10 'Structure model' '_atom_site.label_atom_id' 14 10 'Structure model' '_database_2.pdbx_DOI' 15 10 'Structure model' '_database_2.pdbx_database_accession' 16 10 'Structure model' '_struct_conn.pdbx_dist_value' 17 10 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 10 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 10 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 10 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 10 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 10 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 10 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 11 'Structure model' '_chem_comp.formula' 25 11 'Structure model' '_chem_comp.formula_weight' 26 11 'Structure model' '_entity.formula_weight' 27 11 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1UNJ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-09-10 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1A7Z unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN Z3' PDB 209D unspecified 'CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2' PDB 1UNM unspecified 'CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA' PDB 1I3W unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2' PDB 1A7Y unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D' PDB 1FJA unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2' PDB 173D unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 2D55 unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSC unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1L1V unspecified 'SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)' PDB 316D unspecified 'CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSD unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2' PDB 1MNV unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2' PDB 1OVF unspecified 'SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2' PDB 1QFI unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN X2' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Alexopoulos, E.C.' 1 'Klement, R.' 2 'Jares-Erijman, E.A.' 3 'Uson, I.' 4 'Jovin, T.M.' 5 'Sheldrick, G.M.' 6 # _citation.id primary _citation.title 'Crystal and Solution Structures of 7-Amino-Actinomycin D Complexes with D(Ttagbrut), D(Ttagtt) and D(Tttagttt)' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 61 _citation.page_first 407 _citation.page_last ? _citation.year 2005 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15805595 _citation.pdbx_database_id_DOI 10.1107/S090744490500082X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Alexopoulos, E.C.' 1 ? primary 'Jares-Erijman, E.A.' 2 ? primary 'Jovin, T.M.' 3 ? primary 'Klement, R.' 4 ? primary 'Machinek, R.' 5 ? primary 'Sheldrick, G.M.' 6 ? primary 'Uson, I.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*TP*AP*GP*BRU*TP)-3'" 1879.096 16 ? ? ? ? 2 polymer syn '7-AMINO-ACTINOMYCIN D' 1306.461 8 ? ? ? ? 3 water nat water 18.015 14 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name DACTINOMYCIN # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DT)(DT)(DA)(DG)(BRU)(DT)' TTAGUT A,B,C,D,G,H,I,J,M,N,O,P,S,T,U,V ? 2 'polypeptide(L)' no yes 'T(DVA)P(SAR)(MVA)(PX1)T(DVA)P(SAR)(MVA)' TVPGVXTVPGV E,F,K,L,Q,R,W,X ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DA n 1 4 DG n 1 5 BRU n 1 6 DT n 2 1 THR n 2 2 DVA n 2 3 PRO n 2 4 SAR n 2 5 MVA n 2 6 PX1 n 2 7 THR n 2 8 DVA n 2 9 PRO n 2 10 SAR n 2 11 MVA n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'STREPTOMYCES ANTIBIOTICUS' ? 1890 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 HOH non-polymer . WATER ? 'H2 O' 18.015 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PX1 non-polymer . '(1Z)-7-AMINO-1-(HYDROXYMETHYLENE)-2-IMINO-4,6-DIMETHYL-3-OXO-2,3-DIHYDRO-1H-PHENOXAZINE-9-CARBALDEHYDE' ? 'C16 H13 N3 O6' 343.291 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O6' 328.276 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 ? ? ? A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 BRU 5 5 5 BRU BRU A . n A 1 6 DT 6 6 6 DT DT A . n B 1 1 DT 1 1 ? ? ? B . n B 1 2 DT 2 2 ? ? ? B . n B 1 3 DA 3 3 3 DA DA B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 BRU 5 5 5 BRU BRU B . n B 1 6 DT 6 6 6 DT DT B . n C 1 1 DT 1 1 ? ? ? C . n C 1 2 DT 2 2 2 DT DT C . n C 1 3 DA 3 3 3 DA DA C . n C 1 4 DG 4 4 4 DG DG C . n C 1 5 BRU 5 5 5 BRU BRU C . n C 1 6 DT 6 6 6 DT DT C . n D 1 1 DT 1 1 ? ? ? D . n D 1 2 DT 2 2 2 DT DT D . n D 1 3 DA 3 3 3 DA DA D . n D 1 4 DG 4 4 4 DG DG D . n D 1 5 BRU 5 5 5 BRU BRU D . n D 1 6 DT 6 6 6 DT DT D . n E 2 1 THR 1 1 1 THR THR E . n E 2 2 DVA 2 2 2 DVA DVA E . n E 2 3 PRO 3 3 3 PRO PRO E . n E 2 4 SAR 4 4 4 SAR SAR E . n E 2 5 MVA 5 5 5 MVA MVA E . n E 2 6 PX1 6 6 6 PX1 PX1 E . n E 2 7 THR 7 7 7 THR THR E . n E 2 8 DVA 8 8 8 DVA DVA E . n E 2 9 PRO 9 9 9 PRO PRO E . n E 2 10 SAR 10 10 10 SAR SAR E . n E 2 11 MVA 11 11 11 MVA MVA E . n F 2 1 THR 1 1 1 THR THR F . n F 2 2 DVA 2 2 2 DVA DVA F . n F 2 3 PRO 3 3 3 PRO PRO F . n F 2 4 SAR 4 4 4 SAR SAR F . n F 2 5 MVA 5 5 5 MVA MVA F . n F 2 6 PX1 6 6 6 PX1 PX1 F . n F 2 7 THR 7 7 7 THR THR F . n F 2 8 DVA 8 8 8 DVA DVA F . n F 2 9 PRO 9 9 9 PRO PRO F . n F 2 10 SAR 10 10 10 SAR SAR F . n F 2 11 MVA 11 11 11 MVA MVA F . n G 1 1 DT 1 1 ? ? ? G . n G 1 2 DT 2 2 2 DT DT G . n G 1 3 DA 3 3 3 DA DA G . n G 1 4 DG 4 4 4 DG DG G . n G 1 5 BRU 5 5 5 BRU BRU G . n G 1 6 DT 6 6 6 DT DT G . n H 1 1 DT 1 1 ? ? ? H . n H 1 2 DT 2 2 ? ? ? H . n H 1 3 DA 3 3 3 DA DA H . n H 1 4 DG 4 4 4 DG DG H . n H 1 5 BRU 5 5 5 BRU BRU H . n H 1 6 DT 6 6 6 DT DT H . n I 1 1 DT 1 1 ? ? ? I . n I 1 2 DT 2 2 2 DT DT I . n I 1 3 DA 3 3 3 DA DA I . n I 1 4 DG 4 4 4 DG DG I . n I 1 5 BRU 5 5 5 BRU BRU I . n I 1 6 DT 6 6 6 DT DT I . n J 1 1 DT 1 1 ? ? ? J . n J 1 2 DT 2 2 2 DT DT J . n J 1 3 DA 3 3 3 DA DA J . n J 1 4 DG 4 4 4 DG DG J . n J 1 5 BRU 5 5 5 BRU BRU J . n J 1 6 DT 6 6 6 DT DT J . n K 2 1 THR 1 1 1 THR THR K . n K 2 2 DVA 2 2 2 DVA DVA K . n K 2 3 PRO 3 3 3 PRO PRO K . n K 2 4 SAR 4 4 4 SAR SAR K . n K 2 5 MVA 5 5 5 MVA MVA K . n K 2 6 PX1 6 6 6 PX1 PX1 K . n K 2 7 THR 7 7 7 THR THR K . n K 2 8 DVA 8 8 8 DVA DVA K . n K 2 9 PRO 9 9 9 PRO PRO K . n K 2 10 SAR 10 10 10 SAR SAR K . n K 2 11 MVA 11 11 11 MVA MVA K . n L 2 1 THR 1 1 1 THR THR L . n L 2 2 DVA 2 2 2 DVA DVA L . n L 2 3 PRO 3 3 3 PRO PRO L . n L 2 4 SAR 4 4 4 SAR SAR L . n L 2 5 MVA 5 5 5 MVA MVA L . n L 2 6 PX1 6 6 6 PX1 PX1 L . n L 2 7 THR 7 7 7 THR THR L . n L 2 8 DVA 8 8 8 DVA DVA L . n L 2 9 PRO 9 9 9 PRO PRO L . n L 2 10 SAR 10 10 10 SAR SAR L . n L 2 11 MVA 11 11 11 MVA MVA L . n M 1 1 DT 1 1 ? ? ? M . n M 1 2 DT 2 2 2 DT DT M . n M 1 3 DA 3 3 3 DA DA M . n M 1 4 DG 4 4 4 DG DG M . n M 1 5 BRU 5 5 5 BRU BRU M . n M 1 6 DT 6 6 6 DT DT M . n N 1 1 DT 1 1 ? ? ? N . n N 1 2 DT 2 2 2 DT DT N . n N 1 3 DA 3 3 3 DA DA N . n N 1 4 DG 4 4 4 DG DG N . n N 1 5 BRU 5 5 5 BRU BRU N . n N 1 6 DT 6 6 6 DT DT N . n O 1 1 DT 1 1 ? ? ? O . n O 1 2 DT 2 2 2 DT DT O . n O 1 3 DA 3 3 3 DA DA O . n O 1 4 DG 4 4 4 DG DG O . n O 1 5 BRU 5 5 5 BRU BRU O . n O 1 6 DT 6 6 6 DT DT O . n P 1 1 DT 1 1 ? ? ? P . n P 1 2 DT 2 2 2 DT DT P . n P 1 3 DA 3 3 3 DA DA P . n P 1 4 DG 4 4 4 DG DG P . n P 1 5 BRU 5 5 5 BRU BRU P . n P 1 6 DT 6 6 6 DT DT P . n Q 2 1 THR 1 1 1 THR THR Q . n Q 2 2 DVA 2 2 2 DVA DVA Q . n Q 2 3 PRO 3 3 3 PRO PRO Q . n Q 2 4 SAR 4 4 4 SAR SAR Q . n Q 2 5 MVA 5 5 5 MVA MVA Q . n Q 2 6 PX1 6 6 6 PX1 PX1 Q . n Q 2 7 THR 7 7 7 THR THR Q . n Q 2 8 DVA 8 8 8 DVA DVA Q . n Q 2 9 PRO 9 9 9 PRO PRO Q . n Q 2 10 SAR 10 10 10 SAR SAR Q . n Q 2 11 MVA 11 11 11 MVA MVA Q . n R 2 1 THR 1 1 1 THR THR R . n R 2 2 DVA 2 2 2 DVA DVA R . n R 2 3 PRO 3 3 3 PRO PRO R . n R 2 4 SAR 4 4 4 SAR SAR R . n R 2 5 MVA 5 5 5 MVA MVA R . n R 2 6 PX1 6 6 6 PX1 PX1 R . n R 2 7 THR 7 7 7 THR THR R . n R 2 8 DVA 8 8 8 DVA DVA R . n R 2 9 PRO 9 9 9 PRO PRO R . n R 2 10 SAR 10 10 10 SAR SAR R . n R 2 11 MVA 11 11 11 MVA MVA R . n S 1 1 DT 1 1 ? ? ? S . n S 1 2 DT 2 2 2 DT DT S . n S 1 3 DA 3 3 3 DA DA S . n S 1 4 DG 4 4 4 DG DG S . n S 1 5 BRU 5 5 5 BRU BRU S . n S 1 6 DT 6 6 6 DT DT S . n T 1 1 DT 1 1 ? ? ? T . n T 1 2 DT 2 2 2 DT DT T . n T 1 3 DA 3 3 3 DA DA T . n T 1 4 DG 4 4 4 DG DG T . n T 1 5 BRU 5 5 5 BRU BRU T . n T 1 6 DT 6 6 6 DT DT T . n U 1 1 DT 1 1 ? ? ? U . n U 1 2 DT 2 2 2 DT DT U . n U 1 3 DA 3 3 3 DA DA U . n U 1 4 DG 4 4 4 DG DG U . n U 1 5 BRU 5 5 5 BRU BRU U . n U 1 6 DT 6 6 6 DT DT U . n V 1 1 DT 1 1 1 DT DT V . n V 1 2 DT 2 2 2 DT DT V . n V 1 3 DA 3 3 3 DA DA V . n V 1 4 DG 4 4 4 DG DG V . n V 1 5 BRU 5 5 5 BRU BRU V . n V 1 6 DT 6 6 6 DT DT V . n W 2 1 THR 1 1 1 THR THR W . n W 2 2 DVA 2 2 2 DVA DVA W . n W 2 3 PRO 3 3 3 PRO PRO W . n W 2 4 SAR 4 4 4 SAR SAR W . n W 2 5 MVA 5 5 5 MVA MVA W . n W 2 6 PX1 6 6 6 PX1 PX1 W . n W 2 7 THR 7 7 7 THR THR W . n W 2 8 DVA 8 8 8 DVA DVA W . n W 2 9 PRO 9 9 9 PRO PRO W . n W 2 10 SAR 10 10 10 SAR SAR W . n W 2 11 MVA 11 11 11 MVA MVA W . n X 2 1 THR 1 1 1 THR THR X . n X 2 2 DVA 2 2 2 DVA DVA X . n X 2 3 PRO 3 3 3 PRO PRO X . n X 2 4 SAR 4 4 4 SAR SAR X . n X 2 5 MVA 5 5 5 MVA MVA X . n X 2 6 PX1 6 6 6 PX1 PX1 X . n X 2 7 THR 7 7 7 THR THR X . n X 2 8 DVA 8 8 8 DVA DVA X . n X 2 9 PRO 9 9 9 PRO PRO X . n X 2 10 SAR 10 10 10 SAR SAR X . n X 2 11 MVA 11 11 11 MVA MVA X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code Y 3 HOH 1 2001 2001 HOH HOH C . Z 3 HOH 1 2001 2001 HOH HOH G . AA 3 HOH 1 2001 2001 HOH HOH I . BA 3 HOH 1 2001 2001 HOH HOH K . CA 3 HOH 1 2001 2001 HOH HOH L . CA 3 HOH 2 2002 2002 HOH HOH L . DA 3 HOH 1 2001 2001 HOH HOH M . DA 3 HOH 2 2002 2002 HOH HOH M . EA 3 HOH 1 2001 2001 HOH HOH N . FA 3 HOH 1 2001 2001 HOH HOH O . GA 3 HOH 1 2001 2001 HOH HOH Q . HA 3 HOH 1 2001 2001 HOH HOH R . IA 3 HOH 1 2001 2001 HOH HOH S . JA 3 HOH 1 2001 2001 HOH HOH W . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B DT 6 ? "O3'" ? B DT 6 "O3'" 2 1 Y 1 C DT 6 ? "C5'" ? C DT 6 "C5'" 3 1 Y 1 C DT 6 ? "C4'" ? C DT 6 "C4'" 4 1 Y 1 C DT 6 ? "O4'" ? C DT 6 "O4'" 5 1 Y 1 C DT 6 ? "C3'" ? C DT 6 "C3'" 6 1 Y 1 C DT 6 ? "O3'" ? C DT 6 "O3'" 7 1 Y 1 C DT 6 ? "C2'" ? C DT 6 "C2'" 8 1 Y 1 C DT 6 ? "C1'" ? C DT 6 "C1'" 9 1 Y 1 C DT 6 ? N1 ? C DT 6 N1 10 1 Y 1 C DT 6 ? C2 ? C DT 6 C2 11 1 Y 1 C DT 6 ? O2 ? C DT 6 O2 12 1 Y 1 C DT 6 ? N3 ? C DT 6 N3 13 1 Y 1 C DT 6 ? C4 ? C DT 6 C4 14 1 Y 1 C DT 6 ? O4 ? C DT 6 O4 15 1 Y 1 C DT 6 ? C5 ? C DT 6 C5 16 1 Y 1 C DT 6 ? C7 ? C DT 6 C7 17 1 Y 1 C DT 6 ? C6 ? C DT 6 C6 18 1 Y 1 G DT 2 ? P ? G DT 2 P 19 1 Y 1 G DT 2 ? OP1 ? G DT 2 OP1 20 1 Y 1 G DT 2 ? OP2 ? G DT 2 OP2 21 1 Y 1 G DT 2 ? "O5'" ? G DT 2 "O5'" 22 1 Y 1 H DT 6 ? "O3'" ? H DT 6 "O3'" 23 1 Y 1 J DT 2 ? P ? J DT 2 P 24 1 Y 1 J DT 2 ? OP1 ? J DT 2 OP1 25 1 Y 1 J DT 2 ? OP2 ? J DT 2 OP2 26 1 Y 1 J DT 2 ? "O5'" ? J DT 2 "O5'" 27 1 Y 1 N DT 2 ? P ? N DT 2 P 28 1 Y 1 N DT 2 ? OP1 ? N DT 2 OP1 29 1 Y 1 N DT 2 ? OP2 ? N DT 2 OP2 30 1 Y 1 N DT 2 ? "O5'" ? N DT 2 "O5'" 31 1 Y 1 N DT 2 ? "C5'" ? N DT 2 "C5'" 32 1 Y 1 N DT 2 ? "C4'" ? N DT 2 "C4'" 33 1 Y 1 N DT 2 ? "O4'" ? N DT 2 "O4'" 34 1 Y 1 N DT 2 ? "C3'" ? N DT 2 "C3'" 35 1 Y 1 N DT 2 ? "C2'" ? N DT 2 "C2'" 36 1 Y 1 N DT 2 ? "C1'" ? N DT 2 "C1'" 37 1 Y 1 N DT 2 ? N1 ? N DT 2 N1 38 1 Y 1 N DT 2 ? C2 ? N DT 2 C2 39 1 Y 1 N DT 2 ? O2 ? N DT 2 O2 40 1 Y 1 N DT 2 ? N3 ? N DT 2 N3 41 1 Y 1 N DT 2 ? C4 ? N DT 2 C4 42 1 Y 1 N DT 2 ? O4 ? N DT 2 O4 43 1 Y 1 N DT 2 ? C5 ? N DT 2 C5 44 1 Y 1 N DT 2 ? C7 ? N DT 2 C7 45 1 Y 1 N DT 2 ? C6 ? N DT 2 C6 46 1 Y 1 T DT 2 ? P ? T DT 2 P 47 1 Y 1 T DT 2 ? OP1 ? T DT 2 OP1 48 1 Y 1 T DT 2 ? OP2 ? T DT 2 OP2 49 1 Y 1 T DT 2 ? "O5'" ? T DT 2 "O5'" 50 1 Y 1 T DT 2 ? "C5'" ? T DT 2 "C5'" 51 1 Y 1 T DT 2 ? "C4'" ? T DT 2 "C4'" 52 1 Y 1 T DT 2 ? "O4'" ? T DT 2 "O4'" 53 1 Y 1 T DT 2 ? "C3'" ? T DT 2 "C3'" 54 1 Y 1 T DT 2 ? "C2'" ? T DT 2 "C2'" 55 1 Y 1 T DT 2 ? "C1'" ? T DT 2 "C1'" 56 1 Y 1 T DT 2 ? N1 ? T DT 2 N1 57 1 Y 1 T DT 2 ? C2 ? T DT 2 C2 58 1 Y 1 T DT 2 ? O2 ? T DT 2 O2 59 1 Y 1 T DT 2 ? N3 ? T DT 2 N3 60 1 Y 1 T DT 2 ? C4 ? T DT 2 C4 61 1 Y 1 T DT 2 ? O4 ? T DT 2 O4 62 1 Y 1 T DT 2 ? C5 ? T DT 2 C5 63 1 Y 1 T DT 2 ? C7 ? T DT 2 C7 64 1 Y 1 T DT 2 ? C6 ? T DT 2 C6 65 1 Y 1 T DT 6 ? "O3'" ? T DT 6 "O3'" 66 1 Y 1 U DT 2 ? P ? U DT 2 P 67 1 Y 1 U DT 2 ? OP1 ? U DT 2 OP1 68 1 Y 1 U DT 2 ? OP2 ? U DT 2 OP2 69 1 Y 1 U DT 2 ? "O5'" ? U DT 2 "O5'" 70 1 Y 1 V DT 1 ? "O5'" ? V DT 1 "O5'" 71 1 Y 1 V DT 1 ? "C5'" ? V DT 1 "C5'" # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHELXD phasing . ? 4 # _cell.entry_id 1UNJ _cell.length_a 71.222 _cell.length_b 71.222 _cell.length_c 108.400 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UNJ _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # _exptl.entry_id 1UNJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_percent_sol 40 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.60 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'NA.CITRATE PH 5.6, NA.ACETATE,(NH4)2SO4,HANGING DROP,T 293K' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-07-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9050 1.0 2 0.9196 1.0 3 0.9204 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7A' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9050,0.9196,0.9204 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1UNJ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.500 _reflns.number_obs 11527 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.08000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.5700 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.150 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.60 _reflns_shell.percent_possible_all 93.3 _reflns_shell.Rmerge_I_obs 0.48000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.270 _reflns_shell.pdbx_redundancy 9.37 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1UNJ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 11527 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs 99 _refine.ls_R_factor_obs 0.2760 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.3163 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 577 _refine.ls_number_parameters 8996 _refine.ls_number_restraints 17002 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'IN THIN SHELLS' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1UNJ _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 0.0 _refine_analyze.occupancy_sum_non_hydrogen 2236.88 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 728 _refine_hist.pdbx_number_atoms_nucleic_acid 1503 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 14 _refine_hist.number_atoms_total 2245 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.029 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.159 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.003 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.004 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.002 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1UNJ _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.2760 _pdbx_refine.free_R_factor_no_cutoff 0.3163 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 577 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.2576 _pdbx_refine.free_R_factor_4sig_cutoff 0.2962 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 13.2 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 501 _pdbx_refine.number_reflns_obs_4sig_cutoff 9358 # _database_PDB_matrix.entry_id 1UNJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1UNJ _struct.title 'Crystal structure of a 7-Aminoactinomycin D complex with non-complementary DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1UNJ _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC _struct_keywords.text ;ACTINOMYCIN D, ACTINOMYCIN, ANTIBIOTIC, ANTI CANCER, ANTITUMOR, CHROMOPHORE, DEPSIPEPTIDE, DNA-ANTIBIOTIC COMPLEX, FLUORESCENT AGENT, HOOGSTEN BASE-PAIR ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 2 ? L N N 2 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 2 ? R N N 2 ? S N N 1 ? T N N 1 ? U N N 1 ? V N N 1 ? W N N 2 ? X N N 2 ? Y N N 3 ? Z N N 3 ? AA N N 3 ? BA N N 3 ? CA N N 3 ? DA N N 3 ? EA N N 3 ? FA N N 3 ? GA N N 3 ? HA N N 3 ? IA N N 3 ? JA N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1UNJ 1 ? ? 1UNJ ? 2 NOR NOR00228 2 ? ? NOR00228 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1UNJ A 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 2 1 1UNJ B 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 3 1 1UNJ C 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 4 1 1UNJ D 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 5 1 1UNJ G 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 6 1 1UNJ H 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 7 1 1UNJ I 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 8 1 1UNJ J 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 9 1 1UNJ M 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 10 1 1UNJ N 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 11 1 1UNJ O 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 12 1 1UNJ P 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 13 1 1UNJ S 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 14 1 1UNJ T 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 15 1 1UNJ U 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 16 1 1UNJ V 1 ? 6 ? 1UNJ 1 ? 6 ? 1 6 17 2 1UNJ E 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 18 2 1UNJ F 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 19 2 1UNJ K 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 20 2 1UNJ L 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 21 2 1UNJ Q 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 22 2 1UNJ R 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 23 2 1UNJ W 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 24 2 1UNJ X 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 17 1UNJ PX1 E 6 ? NOR NOR00228 PXZ 6 chromophore 6 1 18 1UNJ PX1 F 6 ? NOR NOR00228 PXZ 6 chromophore 6 2 19 1UNJ PX1 K 6 ? NOR NOR00228 PXZ 6 chromophore 6 3 20 1UNJ PX1 L 6 ? NOR NOR00228 PXZ 6 chromophore 6 4 21 1UNJ PX1 Q 6 ? NOR NOR00228 PXZ 6 chromophore 6 5 22 1UNJ PX1 R 6 ? NOR NOR00228 PXZ 6 chromophore 6 6 23 1UNJ PX1 W 6 ? NOR NOR00228 PXZ 6 chromophore 6 7 24 1UNJ PX1 X 6 ? NOR NOR00228 PXZ 6 chromophore 6 8 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dodecameric 12 2 author_defined_assembly ? dodecameric 12 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L,Y,Z,AA,BA,CA 2 1 M,N,O,P,Q,R,S,T,U,V,W,X,DA,EA,FA,GA,HA,IA,JA # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 4 "O3'" ? ? ? 1_555 A BRU 5 P ? ? A DG 4 A BRU 5 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale both ? A BRU 5 "O3'" ? ? ? 1_555 A DT 6 P ? ? A BRU 5 A DT 6 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale3 covale both ? B DG 4 "O3'" ? ? ? 1_555 B BRU 5 P ? ? B DG 4 B BRU 5 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale4 covale both ? B BRU 5 "O3'" ? ? ? 1_555 B DT 6 P ? ? B BRU 5 B DT 6 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale5 covale both ? C DG 4 "O3'" ? ? ? 1_555 C BRU 5 P ? ? C DG 4 C BRU 5 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale6 covale both ? C BRU 5 "O3'" ? ? ? 1_555 C DT 6 P ? ? C BRU 5 C DT 6 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale7 covale both ? D DG 4 "O3'" ? ? ? 1_555 D BRU 5 P ? ? D DG 4 D BRU 5 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale8 covale both ? D BRU 5 "O3'" ? ? ? 1_555 D DT 6 P ? ? D BRU 5 D DT 6 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale9 covale both ? E THR 1 C ? ? ? 1_555 E DVA 2 N ? ? E THR 1 E DVA 2 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale10 covale one ? E THR 1 OG1 ? ? ? 1_555 E MVA 5 C ? ? E THR 1 E MVA 5 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale11 covale both ? E THR 1 N ? ? ? 1_555 E PX1 6 C0 ? ? E THR 1 E PX1 6 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale12 covale both ? E DVA 2 C ? ? ? 1_555 E PRO 3 N ? ? E DVA 2 E PRO 3 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale13 covale both ? E PRO 3 C ? ? ? 1_555 E SAR 4 N ? ? E PRO 3 E SAR 4 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale14 covale both ? E SAR 4 C ? ? ? 1_555 E MVA 5 N ? ? E SAR 4 E MVA 5 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale15 covale both ? E PX1 6 "C0'" ? ? ? 1_555 E THR 7 N ? ? E PX1 6 E THR 7 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale16 covale both ? E THR 7 C ? ? ? 1_555 E DVA 8 N ? ? E THR 7 E DVA 8 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale17 covale one ? E THR 7 OG1 ? ? ? 1_555 E MVA 11 C ? ? E THR 7 E MVA 11 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale18 covale both ? E DVA 8 C ? ? ? 1_555 E PRO 9 N ? ? E DVA 8 E PRO 9 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale19 covale both ? E PRO 9 C ? ? ? 1_555 E SAR 10 N ? ? E PRO 9 E SAR 10 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale20 covale both ? E SAR 10 C ? ? ? 1_555 E MVA 11 N ? ? E SAR 10 E MVA 11 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale21 covale both ? F THR 1 C ? ? ? 1_555 F DVA 2 N ? ? F THR 1 F DVA 2 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale22 covale one ? F THR 1 OG1 ? ? ? 1_555 F MVA 5 C ? ? F THR 1 F MVA 5 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale23 covale both ? F THR 1 N ? ? ? 1_555 F PX1 6 C0 ? ? F THR 1 F PX1 6 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale24 covale both ? F DVA 2 C ? ? ? 1_555 F PRO 3 N ? ? F DVA 2 F PRO 3 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale25 covale both ? F PRO 3 C ? ? ? 1_555 F SAR 4 N ? ? F PRO 3 F SAR 4 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale26 covale both ? F SAR 4 C ? ? ? 1_555 F MVA 5 N ? ? F SAR 4 F MVA 5 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale27 covale both ? F PX1 6 "C0'" ? ? ? 1_555 F THR 7 N ? ? F PX1 6 F THR 7 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale28 covale both ? F THR 7 C ? ? ? 1_555 F DVA 8 N ? ? F THR 7 F DVA 8 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale29 covale one ? F THR 7 OG1 ? ? ? 1_555 F MVA 11 C ? ? F THR 7 F MVA 11 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale30 covale both ? F DVA 8 C ? ? ? 1_555 F PRO 9 N ? ? F DVA 8 F PRO 9 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale31 covale both ? F PRO 9 C ? ? ? 1_555 F SAR 10 N ? ? F PRO 9 F SAR 10 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale32 covale both ? F SAR 10 C ? ? ? 1_555 F MVA 11 N ? ? F SAR 10 F MVA 11 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale33 covale both ? G DG 4 "O3'" ? ? ? 1_555 G BRU 5 P ? ? G DG 4 G BRU 5 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale34 covale both ? G BRU 5 "O3'" ? ? ? 1_555 G DT 6 P ? ? G BRU 5 G DT 6 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale35 covale both ? H DG 4 "O3'" ? ? ? 1_555 H BRU 5 P ? ? H DG 4 H BRU 5 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale36 covale both ? H BRU 5 "O3'" ? ? ? 1_555 H DT 6 P ? ? H BRU 5 H DT 6 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale37 covale both ? I DG 4 "O3'" ? ? ? 1_555 I BRU 5 P ? ? I DG 4 I BRU 5 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale38 covale both ? I BRU 5 "O3'" ? ? ? 1_555 I DT 6 P ? ? I BRU 5 I DT 6 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale39 covale both ? J DG 4 "O3'" ? ? ? 1_555 J BRU 5 P ? ? J DG 4 J BRU 5 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale40 covale both ? J BRU 5 "O3'" ? ? ? 1_555 J DT 6 P ? ? J BRU 5 J DT 6 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale41 covale both ? K THR 1 C ? ? ? 1_555 K DVA 2 N ? ? K THR 1 K DVA 2 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale42 covale one ? K THR 1 OG1 ? ? ? 1_555 K MVA 5 C ? ? K THR 1 K MVA 5 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale43 covale both ? K THR 1 N ? ? ? 1_555 K PX1 6 C0 ? ? K THR 1 K PX1 6 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale44 covale both ? K DVA 2 C ? ? ? 1_555 K PRO 3 N ? ? K DVA 2 K PRO 3 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale45 covale both ? K PRO 3 C ? ? ? 1_555 K SAR 4 N ? ? K PRO 3 K SAR 4 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale46 covale both ? K SAR 4 C ? ? ? 1_555 K MVA 5 N ? ? K SAR 4 K MVA 5 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale47 covale both ? K PX1 6 "C0'" ? ? ? 1_555 K THR 7 N ? ? K PX1 6 K THR 7 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale48 covale both ? K THR 7 C ? ? ? 1_555 K DVA 8 N ? ? K THR 7 K DVA 8 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale49 covale one ? K THR 7 OG1 ? ? ? 1_555 K MVA 11 C ? ? K THR 7 K MVA 11 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale50 covale both ? K DVA 8 C ? ? ? 1_555 K PRO 9 N ? ? K DVA 8 K PRO 9 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale51 covale both ? K PRO 9 C ? ? ? 1_555 K SAR 10 N ? ? K PRO 9 K SAR 10 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale52 covale both ? K SAR 10 C ? ? ? 1_555 K MVA 11 N ? ? K SAR 10 K MVA 11 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale53 covale both ? L THR 1 C ? ? ? 1_555 L DVA 2 N ? ? L THR 1 L DVA 2 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale54 covale one ? L THR 1 OG1 ? ? ? 1_555 L MVA 5 C ? ? L THR 1 L MVA 5 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale55 covale both ? L THR 1 N ? ? ? 1_555 L PX1 6 C0 ? ? L THR 1 L PX1 6 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale56 covale both ? L DVA 2 C ? ? ? 1_555 L PRO 3 N ? ? L DVA 2 L PRO 3 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale57 covale both ? L PRO 3 C ? ? ? 1_555 L SAR 4 N ? ? L PRO 3 L SAR 4 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale58 covale both ? L SAR 4 C ? ? ? 1_555 L MVA 5 N ? ? L SAR 4 L MVA 5 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale59 covale both ? L PX1 6 "C0'" ? ? ? 1_555 L THR 7 N ? ? L PX1 6 L THR 7 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale60 covale both ? L THR 7 C ? ? ? 1_555 L DVA 8 N ? ? L THR 7 L DVA 8 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale61 covale one ? L THR 7 OG1 ? ? ? 1_555 L MVA 11 C ? ? L THR 7 L MVA 11 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale62 covale both ? L DVA 8 C ? ? ? 1_555 L PRO 9 N ? ? L DVA 8 L PRO 9 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale63 covale both ? L PRO 9 C ? ? ? 1_555 L SAR 10 N ? ? L PRO 9 L SAR 10 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale64 covale both ? L SAR 10 C ? ? ? 1_555 L MVA 11 N ? ? L SAR 10 L MVA 11 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale65 covale both ? M DG 4 "O3'" ? ? ? 1_555 M BRU 5 P ? ? M DG 4 M BRU 5 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale66 covale both ? M BRU 5 "O3'" ? ? ? 1_555 M DT 6 P ? ? M BRU 5 M DT 6 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale67 covale both ? N DG 4 "O3'" ? ? ? 1_555 N BRU 5 P ? ? N DG 4 N BRU 5 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale68 covale both ? N BRU 5 "O3'" ? ? ? 1_555 N DT 6 P ? ? N BRU 5 N DT 6 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale69 covale both ? O DG 4 "O3'" ? ? ? 1_555 O BRU 5 P ? ? O DG 4 O BRU 5 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale70 covale both ? O BRU 5 "O3'" ? ? ? 1_555 O DT 6 P ? ? O BRU 5 O DT 6 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale71 covale both ? P DG 4 "O3'" ? ? ? 1_555 P BRU 5 P ? ? P DG 4 P BRU 5 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale72 covale both ? P BRU 5 "O3'" ? ? ? 1_555 P DT 6 P ? ? P BRU 5 P DT 6 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale73 covale both ? Q THR 1 C ? ? ? 1_555 Q DVA 2 N ? ? Q THR 1 Q DVA 2 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale74 covale one ? Q THR 1 OG1 ? ? ? 1_555 Q MVA 5 C ? ? Q THR 1 Q MVA 5 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale75 covale both ? Q THR 1 N ? ? ? 1_555 Q PX1 6 C0 ? ? Q THR 1 Q PX1 6 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale76 covale both ? Q DVA 2 C ? ? ? 1_555 Q PRO 3 N ? ? Q DVA 2 Q PRO 3 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale77 covale both ? Q PRO 3 C ? ? ? 1_555 Q SAR 4 N ? ? Q PRO 3 Q SAR 4 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale78 covale both ? Q SAR 4 C ? ? ? 1_555 Q MVA 5 N ? ? Q SAR 4 Q MVA 5 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale79 covale both ? Q PX1 6 "C0'" ? ? ? 1_555 Q THR 7 N ? ? Q PX1 6 Q THR 7 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale80 covale both ? Q THR 7 C ? ? ? 1_555 Q DVA 8 N ? ? Q THR 7 Q DVA 8 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale81 covale one ? Q THR 7 OG1 ? ? ? 1_555 Q MVA 11 C ? ? Q THR 7 Q MVA 11 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale82 covale both ? Q DVA 8 C ? ? ? 1_555 Q PRO 9 N ? ? Q DVA 8 Q PRO 9 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale83 covale both ? Q PRO 9 C ? ? ? 1_555 Q SAR 10 N ? ? Q PRO 9 Q SAR 10 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale84 covale both ? Q SAR 10 C ? ? ? 1_555 Q MVA 11 N ? ? Q SAR 10 Q MVA 11 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale85 covale both ? R THR 1 C ? ? ? 1_555 R DVA 2 N ? ? R THR 1 R DVA 2 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale86 covale one ? R THR 1 OG1 ? ? ? 1_555 R MVA 5 C ? ? R THR 1 R MVA 5 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale87 covale both ? R THR 1 N ? ? ? 1_555 R PX1 6 C0 ? ? R THR 1 R PX1 6 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale88 covale both ? R DVA 2 C ? ? ? 1_555 R PRO 3 N ? ? R DVA 2 R PRO 3 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale89 covale both ? R PRO 3 C ? ? ? 1_555 R SAR 4 N ? ? R PRO 3 R SAR 4 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale90 covale both ? R SAR 4 C ? ? ? 1_555 R MVA 5 N ? ? R SAR 4 R MVA 5 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale91 covale both ? R PX1 6 "C0'" ? ? ? 1_555 R THR 7 N ? ? R PX1 6 R THR 7 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale92 covale both ? R THR 7 C ? ? ? 1_555 R DVA 8 N ? ? R THR 7 R DVA 8 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale93 covale one ? R THR 7 OG1 ? ? ? 1_555 R MVA 11 C ? ? R THR 7 R MVA 11 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale94 covale both ? R DVA 8 C ? ? ? 1_555 R PRO 9 N ? ? R DVA 8 R PRO 9 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale95 covale both ? R PRO 9 C ? ? ? 1_555 R SAR 10 N ? ? R PRO 9 R SAR 10 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale96 covale both ? R SAR 10 C ? ? ? 1_555 R MVA 11 N ? ? R SAR 10 R MVA 11 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale97 covale both ? S DG 4 "O3'" ? ? ? 1_555 S BRU 5 P ? ? S DG 4 S BRU 5 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale98 covale both ? S BRU 5 "O3'" ? ? ? 1_555 S DT 6 P ? ? S BRU 5 S DT 6 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale99 covale both ? T DG 4 "O3'" ? ? ? 1_555 T BRU 5 P ? ? T DG 4 T BRU 5 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale100 covale both ? T BRU 5 "O3'" ? ? ? 1_555 T DT 6 P ? ? T BRU 5 T DT 6 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale101 covale both ? U DG 4 "O3'" ? ? ? 1_555 U BRU 5 P ? ? U DG 4 U BRU 5 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale102 covale both ? U BRU 5 "O3'" ? ? ? 1_555 U DT 6 P ? ? U BRU 5 U DT 6 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale103 covale both ? V DG 4 "O3'" ? ? ? 1_555 V BRU 5 P ? ? V DG 4 V BRU 5 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale104 covale both ? V BRU 5 "O3'" ? ? ? 1_555 V DT 6 P ? ? V BRU 5 V DT 6 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale105 covale both ? W THR 1 C ? ? ? 1_555 W DVA 2 N ? ? W THR 1 W DVA 2 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale106 covale one ? W THR 1 OG1 ? ? ? 1_555 W MVA 5 C ? ? W THR 1 W MVA 5 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale107 covale both ? W THR 1 N ? ? ? 1_555 W PX1 6 C0 ? ? W THR 1 W PX1 6 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale108 covale both ? W DVA 2 C ? ? ? 1_555 W PRO 3 N ? ? W DVA 2 W PRO 3 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale109 covale both ? W PRO 3 C ? ? ? 1_555 W SAR 4 N ? ? W PRO 3 W SAR 4 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale110 covale both ? W SAR 4 C ? ? ? 1_555 W MVA 5 N ? ? W SAR 4 W MVA 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale111 covale both ? W PX1 6 "C0'" ? ? ? 1_555 W THR 7 N ? ? W PX1 6 W THR 7 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale112 covale both ? W THR 7 C ? ? ? 1_555 W DVA 8 N ? ? W THR 7 W DVA 8 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale113 covale one ? W THR 7 OG1 ? ? ? 1_555 W MVA 11 C ? ? W THR 7 W MVA 11 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale114 covale both ? W DVA 8 C ? ? ? 1_555 W PRO 9 N ? ? W DVA 8 W PRO 9 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale115 covale both ? W PRO 9 C ? ? ? 1_555 W SAR 10 N ? ? W PRO 9 W SAR 10 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale116 covale both ? W SAR 10 C ? ? ? 1_555 W MVA 11 N ? ? W SAR 10 W MVA 11 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale117 covale both ? X THR 1 C ? ? ? 1_555 X DVA 2 N ? ? X THR 1 X DVA 2 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale118 covale one ? X THR 1 OG1 ? ? ? 1_555 X MVA 5 C ? ? X THR 1 X MVA 5 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale119 covale both ? X THR 1 N ? ? ? 1_555 X PX1 6 C0 ? ? X THR 1 X PX1 6 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale120 covale both ? X DVA 2 C ? ? ? 1_555 X PRO 3 N ? ? X DVA 2 X PRO 3 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale121 covale both ? X PRO 3 C ? ? ? 1_555 X SAR 4 N ? ? X PRO 3 X SAR 4 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale122 covale both ? X SAR 4 C ? ? ? 1_555 X MVA 5 N ? ? X SAR 4 X MVA 5 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale123 covale both ? X PX1 6 "C0'" ? ? ? 1_555 X THR 7 N ? ? X PX1 6 X THR 7 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale124 covale both ? X THR 7 C ? ? ? 1_555 X DVA 8 N ? ? X THR 7 X DVA 8 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale125 covale one ? X THR 7 OG1 ? ? ? 1_555 X MVA 11 C ? ? X THR 7 X MVA 11 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale126 covale both ? X DVA 8 C ? ? ? 1_555 X PRO 9 N ? ? X DVA 8 X PRO 9 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale127 covale both ? X PRO 9 C ? ? ? 1_555 X SAR 10 N ? ? X PRO 9 X SAR 10 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale128 covale both ? X SAR 10 C ? ? ? 1_555 X MVA 11 N ? ? X SAR 10 X MVA 11 1_555 ? ? ? ? ? ? ? 1.331 ? ? hydrog1 hydrog ? ? A BRU 5 N3 ? ? ? 1_555 C DG 4 O6 ? ? A BRU 5 C DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A BRU 5 O2 ? ? ? 1_555 C DG 4 N1 ? ? A BRU 5 C DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A DT 6 N3 ? ? ? 1_555 C DA 3 N1 ? ? A DT 6 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 6 O4 ? ? ? 1_555 C DA 3 N6 ? ? A DT 6 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 3 N1 ? ? ? 1_555 D DT 6 N3 ? ? B DA 3 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 3 N6 ? ? ? 1_555 D DT 6 O4 ? ? B DA 3 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 4 N1 ? ? ? 1_555 D BRU 5 O2 ? ? B DG 4 D BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? B DG 4 O6 ? ? ? 1_555 D BRU 5 N3 ? ? B DG 4 D BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? B BRU 5 N3 ? ? ? 1_555 D DG 4 O6 ? ? B BRU 5 D DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? B BRU 5 O2 ? ? ? 1_555 D DG 4 N1 ? ? B BRU 5 D DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? B DT 6 N3 ? ? ? 1_555 G DG 4 O6 ? ? B DT 6 G DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? B DT 6 O2 ? ? ? 1_555 G DG 4 N1 ? ? B DT 6 G DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? D DT 2 N3 ? ? ? 1_555 G DA 3 N1 ? ? D DT 2 G DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? D DT 2 O4 ? ? ? 1_555 G DA 3 N6 ? ? D DT 2 G DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? D DA 3 N1 ? ? ? 1_555 G DT 2 N3 ? ? D DA 3 G DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? D DA 3 N6 ? ? ? 1_555 G DT 2 O4 ? ? D DA 3 G DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? G BRU 5 N3 ? ? ? 1_555 I DG 4 O6 ? ? G BRU 5 I DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? G BRU 5 O2 ? ? ? 1_555 I DG 4 N1 ? ? G BRU 5 I DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? G DT 6 N3 ? ? ? 1_555 I DA 3 N1 ? ? G DT 6 I DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? G DT 6 O4 ? ? ? 1_555 I DA 3 N6 ? ? G DT 6 I DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? H DA 3 N1 ? ? ? 1_555 J DT 6 N3 ? ? H DA 3 J DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? H DA 3 N6 ? ? ? 1_555 J DT 6 O4 ? ? H DA 3 J DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? H DG 4 N1 ? ? ? 1_555 J BRU 5 O2 ? ? H DG 4 J BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? H DG 4 O6 ? ? ? 1_555 J BRU 5 N3 ? ? H DG 4 J BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? H BRU 5 N3 ? ? ? 1_555 J DG 4 O6 ? ? H BRU 5 J DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? H BRU 5 O2 ? ? ? 1_555 J DG 4 N1 ? ? H BRU 5 J DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? M BRU 5 N3 ? ? ? 1_555 O DG 4 O6 ? ? M BRU 5 O DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? M BRU 5 O2 ? ? ? 1_555 O DG 4 N1 ? ? M BRU 5 O DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? M DT 6 N3 ? ? ? 1_555 O DA 3 N1 ? ? M DT 6 O DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? M DT 6 O4 ? ? ? 1_555 O DA 3 N6 ? ? M DT 6 O DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? N DA 3 N1 ? ? ? 1_555 P DT 6 N3 ? ? N DA 3 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? N DA 3 N6 ? ? ? 1_555 P DT 6 O4 ? ? N DA 3 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? N DG 4 N1 ? ? ? 1_555 P BRU 5 O2 ? ? N DG 4 P BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog34 hydrog ? ? N DG 4 O6 ? ? ? 1_555 P BRU 5 N3 ? ? N DG 4 P BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? N BRU 5 N3 ? ? ? 1_555 P DG 4 O6 ? ? N BRU 5 P DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? N BRU 5 O2 ? ? ? 1_555 P DG 4 N1 ? ? N BRU 5 P DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? N DT 6 N3 ? ? ? 1_555 S DG 4 O6 ? ? N DT 6 S DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog38 hydrog ? ? N DT 6 O2 ? ? ? 1_555 S DG 4 N1 ? ? N DT 6 S DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog39 hydrog ? ? P DT 2 N3 ? ? ? 1_555 S DA 3 N1 ? ? P DT 2 S DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? P DT 2 O4 ? ? ? 1_555 S DA 3 N6 ? ? P DT 2 S DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? P DA 3 N1 ? ? ? 1_555 S DT 2 N3 ? ? P DA 3 S DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? P DA 3 N6 ? ? ? 1_555 S DT 2 O4 ? ? P DA 3 S DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? S BRU 5 N3 ? ? ? 1_555 U DG 4 O6 ? ? S BRU 5 U DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog44 hydrog ? ? S BRU 5 O2 ? ? ? 1_555 U DG 4 N1 ? ? S BRU 5 U DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog45 hydrog ? ? S DT 6 N3 ? ? ? 1_555 U DA 3 N1 ? ? S DT 6 U DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? S DT 6 O4 ? ? ? 1_555 U DA 3 N6 ? ? S DT 6 U DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? T DA 3 N1 ? ? ? 1_555 V DT 6 N3 ? ? T DA 3 V DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? T DA 3 N6 ? ? ? 1_555 V DT 6 O4 ? ? T DA 3 V DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? T DG 4 N1 ? ? ? 1_555 V BRU 5 O2 ? ? T DG 4 V BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog50 hydrog ? ? T DG 4 O6 ? ? ? 1_555 V BRU 5 N3 ? ? T DG 4 V BRU 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog51 hydrog ? ? T BRU 5 N3 ? ? ? 1_555 V DG 4 O6 ? ? T BRU 5 V DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog52 hydrog ? ? T BRU 5 O2 ? ? ? 1_555 V DG 4 N1 ? ? T BRU 5 V DG 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog53 hydrog ? ? V DT 1 N3 ? ? ? 1_555 V DA 3 N7 ? ? V DT 1 V DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog54 hydrog ? ? V DT 1 O4 ? ? ? 1_555 V DA 3 N6 ? ? V DT 1 V DA 3 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 DVA 2 E . ? DVA 2 E PRO 3 E ? PRO 3 E 1 13.05 2 PRO 3 E . ? PRO 3 E SAR 4 E ? SAR 4 E 1 -1.26 3 DVA 8 E . ? DVA 8 E PRO 9 E ? PRO 9 E 1 3.98 4 PRO 9 E . ? PRO 9 E SAR 10 E ? SAR 10 E 1 -10.56 5 DVA 2 F . ? DVA 2 F PRO 3 F ? PRO 3 F 1 8.76 6 PRO 3 F . ? PRO 3 F SAR 4 F ? SAR 4 F 1 -3.41 7 DVA 8 F . ? DVA 8 F PRO 9 F ? PRO 9 F 1 7.29 8 PRO 9 F . ? PRO 9 F SAR 10 F ? SAR 10 F 1 5.00 9 DVA 2 K . ? DVA 2 K PRO 3 K ? PRO 3 K 1 9.46 10 PRO 3 K . ? PRO 3 K SAR 4 K ? SAR 4 K 1 1.73 11 DVA 8 K . ? DVA 8 K PRO 9 K ? PRO 9 K 1 4.94 12 PRO 9 K . ? PRO 9 K SAR 10 K ? SAR 10 K 1 -8.31 13 DVA 2 L . ? DVA 2 L PRO 3 L ? PRO 3 L 1 7.85 14 PRO 3 L . ? PRO 3 L SAR 4 L ? SAR 4 L 1 -4.78 15 DVA 8 L . ? DVA 8 L PRO 9 L ? PRO 9 L 1 5.59 16 PRO 9 L . ? PRO 9 L SAR 10 L ? SAR 10 L 1 6.88 17 DVA 2 Q . ? DVA 2 Q PRO 3 Q ? PRO 3 Q 1 5.71 18 PRO 3 Q . ? PRO 3 Q SAR 4 Q ? SAR 4 Q 1 -3.66 19 DVA 8 Q . ? DVA 8 Q PRO 9 Q ? PRO 9 Q 1 4.41 20 PRO 9 Q . ? PRO 9 Q SAR 10 Q ? SAR 10 Q 1 -5.47 21 DVA 2 R . ? DVA 2 R PRO 3 R ? PRO 3 R 1 10.29 22 PRO 3 R . ? PRO 3 R SAR 4 R ? SAR 4 R 1 -7.25 23 DVA 8 R . ? DVA 8 R PRO 9 R ? PRO 9 R 1 4.04 24 PRO 9 R . ? PRO 9 R SAR 10 R ? SAR 10 R 1 5.67 25 DVA 2 W . ? DVA 2 W PRO 3 W ? PRO 3 W 1 5.92 26 PRO 3 W . ? PRO 3 W SAR 4 W ? SAR 4 W 1 0.89 27 DVA 8 W . ? DVA 8 W PRO 9 W ? PRO 9 W 1 7.99 28 PRO 9 W . ? PRO 9 W SAR 10 W ? SAR 10 W 1 -7.72 29 DVA 2 X . ? DVA 2 X PRO 3 X ? PRO 3 X 1 12.14 30 PRO 3 X . ? PRO 3 X SAR 4 X ? SAR 4 X 1 -12.28 31 DVA 8 X . ? DVA 8 X PRO 9 X ? PRO 9 X 1 5.42 32 PRO 9 X . ? PRO 9 X SAR 10 X ? SAR 10 X 1 4.72 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 11 'BINDING SITE FOR CHAIN E OF 7-AMINO-ACTINOMYCIN D' AC2 Software ? ? ? ? 8 'BINDING SITE FOR CHAIN F OF 7-AMINO-ACTINOMYCIN D' AC3 Software ? ? ? ? 10 'BINDING SITE FOR CHAIN K OF 7-AMINO-ACTINOMYCIN D' AC4 Software ? ? ? ? 10 'BINDING SITE FOR CHAIN L OF 7-AMINO-ACTINOMYCIN D' AC5 Software ? ? ? ? 12 'BINDING SITE FOR CHAIN Q OF 7-AMINO-ACTINOMYCIN D' AC6 Software ? ? ? ? 11 'BINDING SITE FOR CHAIN R OF 7-AMINO-ACTINOMYCIN D' AC7 Software ? ? ? ? 10 'BINDING SITE FOR CHAIN W OF 7-AMINO-ACTINOMYCIN D' AC8 Software ? ? ? ? 12 'BINDING SITE FOR CHAIN X OF 7-AMINO-ACTINOMYCIN D' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 DA A 3 ? DA A 3 . ? 1_555 ? 2 AC1 11 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 11 BRU A 5 ? BRU A 5 . ? 1_555 ? 4 AC1 11 DT A 6 ? DT A 6 . ? 1_555 ? 5 AC1 11 DA C 3 ? DA C 3 . ? 1_555 ? 6 AC1 11 DG C 4 ? DG C 4 . ? 1_555 ? 7 AC1 11 BRU C 5 ? BRU C 5 . ? 1_555 ? 8 AC1 11 DT H 6 ? DT H 6 . ? 1_655 ? 9 AC1 11 DT J 2 ? DT J 2 . ? 1_655 ? 10 AC1 11 BRU T 5 ? BRU T 5 . ? 4_566 ? 11 AC1 11 DT V 1 ? DT V 1 . ? 4_566 ? 12 AC2 8 DG B 4 ? DG B 4 . ? 1_555 ? 13 AC2 8 BRU B 5 ? BRU B 5 . ? 1_555 ? 14 AC2 8 DA D 3 ? DA D 3 . ? 1_555 ? 15 AC2 8 DG D 4 ? DG D 4 . ? 1_555 ? 16 AC2 8 BRU D 5 ? BRU D 5 . ? 1_555 ? 17 AC2 8 DT D 6 ? DT D 6 . ? 1_555 ? 18 AC2 8 DT G 2 ? DT G 2 . ? 1_555 ? 19 AC2 8 DA G 3 ? DA G 3 . ? 1_555 ? 20 AC3 10 DT B 6 ? DT B 6 . ? 1_555 ? 21 AC3 10 DT D 2 ? DT D 2 . ? 1_555 ? 22 AC3 10 DA G 3 ? DA G 3 . ? 1_555 ? 23 AC3 10 DG G 4 ? DG G 4 . ? 1_555 ? 24 AC3 10 BRU G 5 ? BRU G 5 . ? 1_555 ? 25 AC3 10 DT G 6 ? DT G 6 . ? 1_555 ? 26 AC3 10 DA I 3 ? DA I 3 . ? 1_555 ? 27 AC3 10 DG I 4 ? DG I 4 . ? 1_555 ? 28 AC3 10 BRU I 5 ? BRU I 5 . ? 1_555 ? 29 AC3 10 DVA L 2 ? DVA L 2 . ? 6_555 ? 30 AC4 10 DT A 2 ? DT A 2 . ? 1_455 ? 31 AC4 10 DA A 3 ? DA A 3 . ? 1_455 ? 32 AC4 10 DG H 4 ? DG H 4 . ? 1_555 ? 33 AC4 10 BRU H 5 ? BRU H 5 . ? 1_555 ? 34 AC4 10 DA J 3 ? DA J 3 . ? 1_555 ? 35 AC4 10 DG J 4 ? DG J 4 . ? 1_555 ? 36 AC4 10 BRU J 5 ? BRU J 5 . ? 4_466 ? 37 AC4 10 BRU J 5 ? BRU J 5 . ? 1_555 ? 38 AC4 10 DT J 6 ? DT J 6 . ? 1_555 ? 39 AC4 10 DVA K 8 ? DVA K 8 . ? 6_555 ? 40 AC5 12 DA M 3 ? DA M 3 . ? 1_555 ? 41 AC5 12 DG M 4 ? DG M 4 . ? 1_555 ? 42 AC5 12 BRU M 5 ? BRU M 5 . ? 1_555 ? 43 AC5 12 DT M 6 ? DT M 6 . ? 1_555 ? 44 AC5 12 DG O 4 ? DG O 4 . ? 1_555 ? 45 AC5 12 BRU O 5 ? BRU O 5 . ? 1_555 ? 46 AC5 12 HOH GA . ? HOH Q 2001 . ? 1_555 ? 47 AC5 12 DVA R 2 ? DVA R 2 . ? 4_556 ? 48 AC5 12 SAR R 4 ? SAR R 4 . ? 4_556 ? 49 AC5 12 DVA R 8 ? DVA R 8 . ? 4_556 ? 50 AC5 12 DT T 6 ? DT T 6 . ? 1_655 ? 51 AC5 12 DT V 2 ? DT V 2 . ? 1_655 ? 52 AC6 11 DA N 3 ? DA N 3 . ? 1_555 ? 53 AC6 11 DG N 4 ? DG N 4 . ? 1_555 ? 54 AC6 11 BRU N 5 ? BRU N 5 . ? 1_555 ? 55 AC6 11 DA P 3 ? DA P 3 . ? 1_555 ? 56 AC6 11 DG P 4 ? DG P 4 . ? 1_555 ? 57 AC6 11 BRU P 5 ? BRU P 5 . ? 1_555 ? 58 AC6 11 DT P 6 ? DT P 6 . ? 1_555 ? 59 AC6 11 DVA Q 2 ? DVA Q 2 . ? 4_556 ? 60 AC6 11 DVA Q 8 ? DVA Q 8 . ? 4_556 ? 61 AC6 11 DT S 2 ? DT S 2 . ? 1_555 ? 62 AC6 11 DA S 3 ? DA S 3 . ? 1_555 ? 63 AC7 10 DT N 6 ? DT N 6 . ? 1_555 ? 64 AC7 10 DT P 2 ? DT P 2 . ? 1_555 ? 65 AC7 10 DA S 3 ? DA S 3 . ? 1_555 ? 66 AC7 10 DG S 4 ? DG S 4 . ? 1_555 ? 67 AC7 10 BRU S 5 ? BRU S 5 . ? 1_555 ? 68 AC7 10 DT S 6 ? DT S 6 . ? 1_555 ? 69 AC7 10 DG U 4 ? DG U 4 . ? 1_555 ? 70 AC7 10 BRU U 5 ? BRU U 5 . ? 1_555 ? 71 AC7 10 HOH JA . ? HOH W 2001 . ? 1_555 ? 72 AC7 10 DVA X 2 ? DVA X 2 . ? 6_555 ? 73 AC8 12 DT M 2 ? DT M 2 . ? 1_455 ? 74 AC8 12 DA M 3 ? DA M 3 . ? 1_455 ? 75 AC8 12 DT S 6 ? DT S 6 . ? 1_555 ? 76 AC8 12 DA T 3 ? DA T 3 . ? 1_555 ? 77 AC8 12 DG T 4 ? DG T 4 . ? 1_555 ? 78 AC8 12 BRU T 5 ? BRU T 5 . ? 1_555 ? 79 AC8 12 DA V 3 ? DA V 3 . ? 1_555 ? 80 AC8 12 DG V 4 ? DG V 4 . ? 1_555 ? 81 AC8 12 BRU V 5 ? BRU V 5 . ? 1_555 ? 82 AC8 12 DT V 6 ? DT V 6 . ? 1_555 ? 83 AC8 12 DVA W 2 ? DVA W 2 . ? 6_555 ? 84 AC8 12 DVA W 8 ? DVA W 8 . ? 6_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O4 _pdbx_validate_symm_contact.auth_asym_id_1 I _pdbx_validate_symm_contact.auth_comp_id_1 DT _pdbx_validate_symm_contact.auth_seq_id_1 2 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 N6 _pdbx_validate_symm_contact.auth_asym_id_2 J _pdbx_validate_symm_contact.auth_comp_id_2 DA _pdbx_validate_symm_contact.auth_seq_id_2 3 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_466 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DA 3 ? ? "C1'" B DA 3 ? ? N9 B DA 3 ? ? 103.64 108.00 -4.36 0.70 N 2 1 "O4'" C DT 2 ? ? "C1'" C DT 2 ? ? N1 C DT 2 ? ? 110.11 108.30 1.81 0.30 N 3 1 "O4'" N DA 3 ? ? "C1'" N DA 3 ? ? N9 N DA 3 ? ? 103.47 108.00 -4.53 0.70 N 4 1 "O4'" O DT 2 ? ? "C1'" O DT 2 ? ? N1 O DT 2 ? ? 111.56 108.30 3.26 0.30 N 5 1 "O4'" P DT 6 ? ? "C4'" P DT 6 ? ? "C3'" P DT 6 ? ? 102.02 104.50 -2.48 0.40 N # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 SAR Q 10 ? ? -10.31 2 1 THR R 1 ? ? -10.57 # _pdbx_molecule_features.prd_id PRD_000010 _pdbx_molecule_features.name 7-AminoActinomycin _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PX1) THE CHROMOPHORE PX1 IS A MODIFIED PXZ WITH C-NH2 REPLACING C-H IN POSITION 7 OF THE PHENOXAZONE RING. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000010 E 2 PRD_000010 F 3 PRD_000010 K 4 PRD_000010 L 5 PRD_000010 Q 6 PRD_000010 R 7 PRD_000010 W 8 PRD_000010 X # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 5 A BRU 5 ? DU ? 2 B BRU 5 B BRU 5 ? DU ? 3 C BRU 5 C BRU 5 ? DU ? 4 D BRU 5 D BRU 5 ? DU ? 5 E SAR 4 E SAR 4 ? GLY SARCOSINE 6 E MVA 5 E MVA 5 ? VAL N-METHYLVALINE 7 E SAR 10 E SAR 10 ? GLY SARCOSINE 8 E MVA 11 E MVA 11 ? VAL N-METHYLVALINE 9 F SAR 4 F SAR 4 ? GLY SARCOSINE 10 F MVA 5 F MVA 5 ? VAL N-METHYLVALINE 11 F SAR 10 F SAR 10 ? GLY SARCOSINE 12 F MVA 11 F MVA 11 ? VAL N-METHYLVALINE 13 G BRU 5 G BRU 5 ? DU ? 14 H BRU 5 H BRU 5 ? DU ? 15 I BRU 5 I BRU 5 ? DU ? 16 J BRU 5 J BRU 5 ? DU ? 17 K SAR 4 K SAR 4 ? GLY SARCOSINE 18 K MVA 5 K MVA 5 ? VAL N-METHYLVALINE 19 K SAR 10 K SAR 10 ? GLY SARCOSINE 20 K MVA 11 K MVA 11 ? VAL N-METHYLVALINE 21 L SAR 4 L SAR 4 ? GLY SARCOSINE 22 L MVA 5 L MVA 5 ? VAL N-METHYLVALINE 23 L SAR 10 L SAR 10 ? GLY SARCOSINE 24 L MVA 11 L MVA 11 ? VAL N-METHYLVALINE 25 M BRU 5 M BRU 5 ? DU ? 26 N BRU 5 N BRU 5 ? DU ? 27 O BRU 5 O BRU 5 ? DU ? 28 P BRU 5 P BRU 5 ? DU ? 29 Q SAR 4 Q SAR 4 ? GLY SARCOSINE 30 Q MVA 5 Q MVA 5 ? VAL N-METHYLVALINE 31 Q SAR 10 Q SAR 10 ? GLY SARCOSINE 32 Q MVA 11 Q MVA 11 ? VAL N-METHYLVALINE 33 R SAR 4 R SAR 4 ? GLY SARCOSINE 34 R MVA 5 R MVA 5 ? VAL N-METHYLVALINE 35 R SAR 10 R SAR 10 ? GLY SARCOSINE 36 R MVA 11 R MVA 11 ? VAL N-METHYLVALINE 37 S BRU 5 S BRU 5 ? DU ? 38 T BRU 5 T BRU 5 ? DU ? 39 U BRU 5 U BRU 5 ? DU ? 40 V BRU 5 V BRU 5 ? DU ? 41 W SAR 4 W SAR 4 ? GLY SARCOSINE 42 W MVA 5 W MVA 5 ? VAL N-METHYLVALINE 43 W SAR 10 W SAR 10 ? GLY SARCOSINE 44 W MVA 11 W MVA 11 ? VAL N-METHYLVALINE 45 X SAR 4 X SAR 4 ? GLY SARCOSINE 46 X MVA 5 X MVA 5 ? VAL N-METHYLVALINE 47 X SAR 10 X SAR 10 ? GLY SARCOSINE 48 X MVA 11 X MVA 11 ? VAL N-METHYLVALINE # _pdbx_entry_details.entry_id 1UNJ _pdbx_entry_details.compound_details ;ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) GROUP: 1 NAME: ACTINOMYCIN D CHAIN: E, F, K, L, Q, R, W, X COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 11 DESCRIPTION: ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PX1) THE CHROMOPHORE PX1 IS A MODIFIED PXZ WITH C-NH2 REPLACING C-H IN POSITION 7 OF THE PHENOXAZONE RING. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DT 1 ? A DT 1 2 1 Y 1 B DT 1 ? B DT 1 3 1 Y 1 B DT 2 ? B DT 2 4 1 Y 1 C DT 1 ? C DT 1 5 1 Y 1 D DT 1 ? D DT 1 6 1 Y 1 G DT 1 ? G DT 1 7 1 Y 1 H DT 1 ? H DT 1 8 1 Y 1 H DT 2 ? H DT 2 9 1 Y 1 I DT 1 ? I DT 1 10 1 Y 1 J DT 1 ? J DT 1 11 1 Y 1 M DT 1 ? M DT 1 12 1 Y 1 N DT 1 ? N DT 1 13 1 Y 1 O DT 1 ? O DT 1 14 1 Y 1 P DT 1 ? P DT 1 15 1 Y 1 S DT 1 ? S DT 1 16 1 Y 1 T DT 1 ? T DT 1 17 1 Y 1 U DT 1 ? U DT 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DG OP3 O N N 70 DG P P N N 71 DG OP1 O N N 72 DG OP2 O N N 73 DG "O5'" O N N 74 DG "C5'" C N N 75 DG "C4'" C N R 76 DG "O4'" O N N 77 DG "C3'" C N S 78 DG "O3'" O N N 79 DG "C2'" C N N 80 DG "C1'" C N R 81 DG N9 N Y N 82 DG C8 C Y N 83 DG N7 N Y N 84 DG C5 C Y N 85 DG C6 C N N 86 DG O6 O N N 87 DG N1 N N N 88 DG C2 C N N 89 DG N2 N N N 90 DG N3 N N N 91 DG C4 C Y N 92 DG HOP3 H N N 93 DG HOP2 H N N 94 DG "H5'" H N N 95 DG "H5''" H N N 96 DG "H4'" H N N 97 DG "H3'" H N N 98 DG "HO3'" H N N 99 DG "H2'" H N N 100 DG "H2''" H N N 101 DG "H1'" H N N 102 DG H8 H N N 103 DG H1 H N N 104 DG H21 H N N 105 DG H22 H N N 106 DT OP3 O N N 107 DT P P N N 108 DT OP1 O N N 109 DT OP2 O N N 110 DT "O5'" O N N 111 DT "C5'" C N N 112 DT "C4'" C N R 113 DT "O4'" O N N 114 DT "C3'" C N S 115 DT "O3'" O N N 116 DT "C2'" C N N 117 DT "C1'" C N R 118 DT N1 N N N 119 DT C2 C N N 120 DT O2 O N N 121 DT N3 N N N 122 DT C4 C N N 123 DT O4 O N N 124 DT C5 C N N 125 DT C7 C N N 126 DT C6 C N N 127 DT HOP3 H N N 128 DT HOP2 H N N 129 DT "H5'" H N N 130 DT "H5''" H N N 131 DT "H4'" H N N 132 DT "H3'" H N N 133 DT "HO3'" H N N 134 DT "H2'" H N N 135 DT "H2''" H N N 136 DT "H1'" H N N 137 DT H3 H N N 138 DT H71 H N N 139 DT H72 H N N 140 DT H73 H N N 141 DT H6 H N N 142 DVA N N N N 143 DVA CA C N R 144 DVA CB C N N 145 DVA CG1 C N N 146 DVA CG2 C N N 147 DVA C C N N 148 DVA O O N N 149 DVA OXT O N N 150 DVA H H N N 151 DVA H2 H N N 152 DVA HA H N N 153 DVA HB H N N 154 DVA HG11 H N N 155 DVA HG12 H N N 156 DVA HG13 H N N 157 DVA HG21 H N N 158 DVA HG22 H N N 159 DVA HG23 H N N 160 DVA HXT H N N 161 HOH O O N N 162 HOH H1 H N N 163 HOH H2 H N N 164 MVA N N N N 165 MVA CN C N N 166 MVA CA C N S 167 MVA CB C N N 168 MVA CG1 C N N 169 MVA CG2 C N N 170 MVA C C N N 171 MVA O O N N 172 MVA OXT O N N 173 MVA H H N N 174 MVA HN1 H N N 175 MVA HN2 H N N 176 MVA HN3 H N N 177 MVA HA H N N 178 MVA HB H N N 179 MVA HG11 H N N 180 MVA HG12 H N N 181 MVA HG13 H N N 182 MVA HG21 H N N 183 MVA HG22 H N N 184 MVA HG23 H N N 185 MVA HXT H N N 186 PRO N N N N 187 PRO CA C N S 188 PRO C C N N 189 PRO O O N N 190 PRO CB C N N 191 PRO CG C N N 192 PRO CD C N N 193 PRO OXT O N N 194 PRO H H N N 195 PRO HA H N N 196 PRO HB2 H N N 197 PRO HB3 H N N 198 PRO HG2 H N N 199 PRO HG3 H N N 200 PRO HD2 H N N 201 PRO HD3 H N N 202 PRO HXT H N N 203 PX1 C1 C N N 204 PX1 C0 C N N 205 PX1 O1 O N N 206 PX1 C2 C N N 207 PX1 N2 N N N 208 PX1 C3 C N N 209 PX1 O3 O N N 210 PX1 C4 C N N 211 PX1 O5 O N N 212 PX1 C6 C Y N 213 PX1 C7 C Y N 214 PX1 C8 C Y N 215 PX1 C9 C Y N 216 PX1 "C0'" C N N 217 PX1 "O1'" O N N 218 PX1 N10 N N N 219 PX1 C11 C N N 220 PX1 C12 C N N 221 PX1 C13 C Y N 222 PX1 C14 C Y N 223 PX1 C15 C N N 224 PX1 C16 C N N 225 PX1 N7 N N N 226 PX1 H4 H N N 227 PX1 H3 H N N 228 PX1 H8 H N N 229 PX1 H151 H N N 230 PX1 H152 H N N 231 PX1 H153 H N N 232 PX1 H161 H N N 233 PX1 H162 H N N 234 PX1 H163 H N N 235 PX1 H7N1 H N N 236 PX1 H7N2 H N N 237 PX1 "OXT'" O N N 238 PX1 OXT O N N 239 PX1 "HXT'" H N N 240 PX1 HXT H N N 241 PXZ C1 C N N 242 PXZ C0 C N N 243 PXZ O1 O N N 244 PXZ C2 C N N 245 PXZ N2 N N N 246 PXZ C3 C N N 247 PXZ O3 O N N 248 PXZ C4 C N N 249 PXZ O5 O N N 250 PXZ C6 C Y N 251 PXZ C7 C Y N 252 PXZ C8 C Y N 253 PXZ C9 C Y N 254 PXZ "C0'" C N N 255 PXZ "O1'" O N N 256 PXZ N10 N N N 257 PXZ C11 C N N 258 PXZ C12 C N N 259 PXZ C13 C Y N 260 PXZ C14 C Y N 261 PXZ C15 C N N 262 PXZ C16 C N N 263 PXZ HN21 H N N 264 PXZ HN22 H N N 265 PXZ H7 H N N 266 PXZ H8 H N N 267 PXZ H151 H N N 268 PXZ H152 H N N 269 PXZ H153 H N N 270 PXZ H161 H N N 271 PXZ H162 H N N 272 PXZ H163 H N N 273 PXZ "OXT'" O N N 274 PXZ OXT O N N 275 PXZ "HXT'" H N N 276 PXZ HXT H N N 277 SAR N N N N 278 SAR CA C N N 279 SAR C C N N 280 SAR O O N N 281 SAR CN C N N 282 SAR OXT O N N 283 SAR H H N N 284 SAR HA2 H N N 285 SAR HA3 H N N 286 SAR HN1 H N N 287 SAR HN2 H N N 288 SAR HN3 H N N 289 SAR HXT H N N 290 THR N N N N 291 THR CA C N S 292 THR C C N N 293 THR O O N N 294 THR CB C N R 295 THR OG1 O N N 296 THR CG2 C N N 297 THR OXT O N N 298 THR H H N N 299 THR H2 H N N 300 THR HA H N N 301 THR HB H N N 302 THR HG1 H N N 303 THR HG21 H N N 304 THR HG22 H N N 305 THR HG23 H N N 306 THR HXT H N N 307 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DG OP3 P sing N N 73 DG OP3 HOP3 sing N N 74 DG P OP1 doub N N 75 DG P OP2 sing N N 76 DG P "O5'" sing N N 77 DG OP2 HOP2 sing N N 78 DG "O5'" "C5'" sing N N 79 DG "C5'" "C4'" sing N N 80 DG "C5'" "H5'" sing N N 81 DG "C5'" "H5''" sing N N 82 DG "C4'" "O4'" sing N N 83 DG "C4'" "C3'" sing N N 84 DG "C4'" "H4'" sing N N 85 DG "O4'" "C1'" sing N N 86 DG "C3'" "O3'" sing N N 87 DG "C3'" "C2'" sing N N 88 DG "C3'" "H3'" sing N N 89 DG "O3'" "HO3'" sing N N 90 DG "C2'" "C1'" sing N N 91 DG "C2'" "H2'" sing N N 92 DG "C2'" "H2''" sing N N 93 DG "C1'" N9 sing N N 94 DG "C1'" "H1'" sing N N 95 DG N9 C8 sing Y N 96 DG N9 C4 sing Y N 97 DG C8 N7 doub Y N 98 DG C8 H8 sing N N 99 DG N7 C5 sing Y N 100 DG C5 C6 sing N N 101 DG C5 C4 doub Y N 102 DG C6 O6 doub N N 103 DG C6 N1 sing N N 104 DG N1 C2 sing N N 105 DG N1 H1 sing N N 106 DG C2 N2 sing N N 107 DG C2 N3 doub N N 108 DG N2 H21 sing N N 109 DG N2 H22 sing N N 110 DG N3 C4 sing N N 111 DT OP3 P sing N N 112 DT OP3 HOP3 sing N N 113 DT P OP1 doub N N 114 DT P OP2 sing N N 115 DT P "O5'" sing N N 116 DT OP2 HOP2 sing N N 117 DT "O5'" "C5'" sing N N 118 DT "C5'" "C4'" sing N N 119 DT "C5'" "H5'" sing N N 120 DT "C5'" "H5''" sing N N 121 DT "C4'" "O4'" sing N N 122 DT "C4'" "C3'" sing N N 123 DT "C4'" "H4'" sing N N 124 DT "O4'" "C1'" sing N N 125 DT "C3'" "O3'" sing N N 126 DT "C3'" "C2'" sing N N 127 DT "C3'" "H3'" sing N N 128 DT "O3'" "HO3'" sing N N 129 DT "C2'" "C1'" sing N N 130 DT "C2'" "H2'" sing N N 131 DT "C2'" "H2''" sing N N 132 DT "C1'" N1 sing N N 133 DT "C1'" "H1'" sing N N 134 DT N1 C2 sing N N 135 DT N1 C6 sing N N 136 DT C2 O2 doub N N 137 DT C2 N3 sing N N 138 DT N3 C4 sing N N 139 DT N3 H3 sing N N 140 DT C4 O4 doub N N 141 DT C4 C5 sing N N 142 DT C5 C7 sing N N 143 DT C5 C6 doub N N 144 DT C7 H71 sing N N 145 DT C7 H72 sing N N 146 DT C7 H73 sing N N 147 DT C6 H6 sing N N 148 DVA N CA sing N N 149 DVA N H sing N N 150 DVA N H2 sing N N 151 DVA CA CB sing N N 152 DVA CA C sing N N 153 DVA CA HA sing N N 154 DVA CB CG1 sing N N 155 DVA CB CG2 sing N N 156 DVA CB HB sing N N 157 DVA CG1 HG11 sing N N 158 DVA CG1 HG12 sing N N 159 DVA CG1 HG13 sing N N 160 DVA CG2 HG21 sing N N 161 DVA CG2 HG22 sing N N 162 DVA CG2 HG23 sing N N 163 DVA C O doub N N 164 DVA C OXT sing N N 165 DVA OXT HXT sing N N 166 HOH O H1 sing N N 167 HOH O H2 sing N N 168 MVA N CN sing N N 169 MVA N CA sing N N 170 MVA N H sing N N 171 MVA CN HN1 sing N N 172 MVA CN HN2 sing N N 173 MVA CN HN3 sing N N 174 MVA CA CB sing N N 175 MVA CA C sing N N 176 MVA CA HA sing N N 177 MVA CB CG1 sing N N 178 MVA CB CG2 sing N N 179 MVA CB HB sing N N 180 MVA CG1 HG11 sing N N 181 MVA CG1 HG12 sing N N 182 MVA CG1 HG13 sing N N 183 MVA CG2 HG21 sing N N 184 MVA CG2 HG22 sing N N 185 MVA CG2 HG23 sing N N 186 MVA C O doub N N 187 MVA C OXT sing N N 188 MVA OXT HXT sing N N 189 PRO N CA sing N N 190 PRO N CD sing N N 191 PRO N H sing N N 192 PRO CA C sing N N 193 PRO CA CB sing N N 194 PRO CA HA sing N N 195 PRO C O doub N N 196 PRO C OXT sing N N 197 PRO CB CG sing N N 198 PRO CB HB2 sing N N 199 PRO CB HB3 sing N N 200 PRO CG CD sing N N 201 PRO CG HG2 sing N N 202 PRO CG HG3 sing N N 203 PRO CD HD2 sing N N 204 PRO CD HD3 sing N N 205 PRO OXT HXT sing N N 206 PX1 C1 C0 doub N N 207 PX1 C1 C2 sing N N 208 PX1 C1 C11 sing N N 209 PX1 C0 O1 sing N N 210 PX1 O1 H4 sing N N 211 PX1 C2 N2 doub N N 212 PX1 C2 C3 sing N N 213 PX1 N2 H3 sing N N 214 PX1 C3 O3 doub N N 215 PX1 C3 C4 sing N N 216 PX1 C4 C12 doub N N 217 PX1 C4 C15 sing N N 218 PX1 O5 C12 sing N N 219 PX1 O5 C13 sing N N 220 PX1 C6 C7 doub Y N 221 PX1 C6 C13 sing Y N 222 PX1 C6 C16 sing N N 223 PX1 C7 C8 sing Y N 224 PX1 C7 N7 sing N N 225 PX1 C8 C9 doub Y N 226 PX1 C8 H8 sing N N 227 PX1 C9 "C0'" sing N N 228 PX1 C9 C14 sing Y N 229 PX1 "C0'" "O1'" doub N N 230 PX1 N10 C11 doub N N 231 PX1 N10 C14 sing N N 232 PX1 C11 C12 sing N N 233 PX1 C13 C14 doub Y N 234 PX1 C15 H151 sing N N 235 PX1 C15 H152 sing N N 236 PX1 C15 H153 sing N N 237 PX1 C16 H161 sing N N 238 PX1 C16 H162 sing N N 239 PX1 C16 H163 sing N N 240 PX1 N7 H7N1 sing N N 241 PX1 N7 H7N2 sing N N 242 PX1 "C0'" "OXT'" sing N N 243 PX1 C0 OXT sing N N 244 PX1 "OXT'" "HXT'" sing N N 245 PX1 OXT HXT sing N N 246 PXZ C1 C0 sing N N 247 PXZ C1 C2 doub N N 248 PXZ C1 C11 sing N N 249 PXZ C0 O1 doub N N 250 PXZ C2 N2 sing N N 251 PXZ C2 C3 sing N N 252 PXZ N2 HN21 sing N N 253 PXZ N2 HN22 sing N N 254 PXZ C3 O3 doub N N 255 PXZ C3 C4 sing N N 256 PXZ C4 C12 doub N N 257 PXZ C4 C15 sing N N 258 PXZ O5 C12 sing N N 259 PXZ O5 C13 sing N N 260 PXZ C6 C7 doub Y N 261 PXZ C6 C13 sing Y N 262 PXZ C6 C16 sing N N 263 PXZ C7 C8 sing Y N 264 PXZ C7 H7 sing N N 265 PXZ C8 C9 doub Y N 266 PXZ C8 H8 sing N N 267 PXZ C9 "C0'" sing N N 268 PXZ C9 C14 sing Y N 269 PXZ "C0'" "O1'" doub N N 270 PXZ N10 C11 doub N N 271 PXZ N10 C14 sing N N 272 PXZ C11 C12 sing N N 273 PXZ C13 C14 doub Y N 274 PXZ C15 H151 sing N N 275 PXZ C15 H152 sing N N 276 PXZ C15 H153 sing N N 277 PXZ C16 H161 sing N N 278 PXZ C16 H162 sing N N 279 PXZ C16 H163 sing N N 280 PXZ "C0'" "OXT'" sing N N 281 PXZ C0 OXT sing N N 282 PXZ "OXT'" "HXT'" sing N N 283 PXZ OXT HXT sing N N 284 SAR N CA sing N N 285 SAR N CN sing N N 286 SAR N H sing N N 287 SAR CA C sing N N 288 SAR CA HA2 sing N N 289 SAR CA HA3 sing N N 290 SAR C O doub N N 291 SAR C OXT sing N N 292 SAR CN HN1 sing N N 293 SAR CN HN2 sing N N 294 SAR CN HN3 sing N N 295 SAR OXT HXT sing N N 296 THR N CA sing N N 297 THR N H sing N N 298 THR N H2 sing N N 299 THR CA C sing N N 300 THR CA CB sing N N 301 THR CA HA sing N N 302 THR C O doub N N 303 THR C OXT sing N N 304 THR CB OG1 sing N N 305 THR CB CG2 sing N N 306 THR CB HB sing N N 307 THR OG1 HG1 sing N N 308 THR CG2 HG21 sing N N 309 THR CG2 HG22 sing N N 310 THR CG2 HG23 sing N N 311 THR OXT HXT sing N N 312 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1UNJ 'double helix' 1UNJ 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A BRU 5 1_555 C DG 4 1_555 2.367 -0.537 0.812 -6.693 -4.679 11.019 1 A_BRU5:DG4_C A 5 ? C 4 ? 28 1 1 A DT 6 1_555 C DA 3 1_555 -0.471 -0.320 0.377 7.296 -13.931 -7.479 2 A_DT6:DA3_C A 6 ? C 3 ? 20 1 1 B DA 3 1_555 D DT 6 1_555 0.150 -0.188 0.103 -8.912 -16.137 4.634 3 B_DA3:DT6_D B 3 ? D 6 ? 20 1 1 B DG 4 1_555 D BRU 5 1_555 -2.102 -0.702 0.281 4.075 -1.997 0.770 4 B_DG4:BRU5_D B 4 ? D 5 ? 28 1 1 B BRU 5 1_555 D DG 4 1_555 2.058 -0.736 0.652 -6.310 10.468 -14.079 5 B_BRU5:DG4_D B 5 ? D 4 ? 28 1 1 G DT 2 1_555 D DA 3 1_555 -0.273 -0.282 0.523 -12.801 15.976 -6.769 6 G_DT2:DA3_D G 2 ? D 3 ? 20 1 1 G DA 3 1_555 D DT 2 1_555 -0.203 0.040 0.288 10.098 2.606 0.196 7 G_DA3:DT2_D G 3 ? D 2 ? 20 1 1 G DG 4 1_555 B DT 6 1_555 -2.096 -0.202 0.321 -6.088 11.545 3.087 8 G_DG4:DT6_B G 4 ? B 6 ? 28 1 1 G BRU 5 1_555 I DG 4 1_555 1.876 -0.590 0.797 -10.690 -3.734 7.307 9 G_BRU5:DG4_I G 5 ? I 4 ? 28 1 1 G DT 6 1_555 I DA 3 1_555 0.096 -0.181 -0.021 3.885 -13.505 1.349 10 G_DT6:DA3_I G 6 ? I 3 ? 20 1 1 H DA 3 1_555 J DT 6 1_555 -0.328 0.072 -0.043 -14.507 -15.650 7.021 11 H_DA3:DT6_J H 3 ? J 6 ? 20 1 1 H DG 4 1_555 J BRU 5 1_555 -2.226 -0.197 0.202 -1.202 -1.655 8.984 12 H_DG4:BRU5_J H 4 ? J 5 ? 28 1 1 H BRU 5 1_555 J DG 4 1_555 2.047 -0.378 0.550 -9.884 9.132 -8.540 13 H_BRU5:DG4_J H 5 ? J 4 ? 28 1 1 M BRU 5 1_555 O DG 4 1_555 1.932 -0.636 0.645 -9.329 -4.039 4.480 14 M_BRU5:DG4_O M 5 ? O 4 ? 28 1 1 M DT 6 1_555 O DA 3 1_555 -0.154 -0.048 0.213 3.464 -15.717 0.349 15 M_DT6:DA3_O M 6 ? O 3 ? 20 1 1 N DA 3 1_555 P DT 6 1_555 -0.380 -0.271 0.076 -7.573 -15.816 3.879 16 N_DA3:DT6_P N 3 ? P 6 ? 20 1 1 N DG 4 1_555 P BRU 5 1_555 -2.155 -0.486 0.428 5.506 -4.413 0.985 17 N_DG4:BRU5_P N 4 ? P 5 ? 28 1 1 N BRU 5 1_555 P DG 4 1_555 2.269 -0.719 0.788 -7.851 9.770 -10.080 18 N_BRU5:DG4_P N 5 ? P 4 ? 28 1 1 S DT 2 1_555 P DA 3 1_555 -0.252 -0.213 0.149 -3.678 9.269 0.067 19 S_DT2:DA3_P S 2 ? P 3 ? 20 1 1 S DA 3 1_555 P DT 2 1_555 0.117 -0.160 0.380 11.211 -5.257 2.510 20 S_DA3:DT2_P S 3 ? P 2 ? 20 1 1 S DG 4 1_555 N DT 6 1_555 -2.425 -0.853 0.768 -1.891 9.357 1.804 21 S_DG4:DT6_N S 4 ? N 6 ? 28 1 1 S BRU 5 1_555 U DG 4 1_555 1.866 -0.458 0.713 -8.104 0.338 6.287 22 S_BRU5:DG4_U S 5 ? U 4 ? 28 1 1 S DT 6 1_555 U DA 3 1_555 0.483 -0.206 0.290 4.940 -13.249 3.959 23 S_DT6:DA3_U S 6 ? U 3 ? 20 1 1 T DA 3 1_555 V DT 6 1_555 0.059 -0.289 0.426 -8.164 -17.815 -0.444 24 T_DA3:DT6_V T 3 ? V 6 ? 20 1 1 T DG 4 1_555 V BRU 5 1_555 -1.980 -0.349 0.322 1.596 -3.159 9.003 25 T_DG4:BRU5_V T 4 ? V 5 ? 28 1 1 T BRU 5 1_555 V DG 4 1_555 2.030 -0.660 0.764 -12.960 7.781 -14.283 26 T_BRU5:DG4_V T 5 ? V 4 ? 28 1 1 V DT 1 1_555 V DA 3 1_555 -0.476 3.490 -0.568 6.606 -17.891 -75.195 27 V_DT1:DA3_V V 1 ? V 3 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A BRU 5 1_555 C DG 4 1_555 A DT 6 1_555 C DA 3 1_555 -1.091 0.208 3.000 5.818 9.114 17.124 -3.076 5.447 2.325 27.346 -17.455 20.231 1 AA_BRU5DT6:DA3DG4_CC A 5 ? C 4 ? A 6 ? C 3 ? 1 A DT 6 1_555 C DA 3 1_555 B DA 3 1_555 D DT 6 1_555 0.547 1.778 4.123 1.546 -5.987 -24.012 -1.746 1.893 4.386 14.094 3.640 -24.785 2 AB_DT6DA3:DT6DA3_DC A 6 ? C 3 ? B 3 ? D 6 ? 1 B DA 3 1_555 D DT 6 1_555 B DG 4 1_555 D BRU 5 1_555 0.044 0.286 2.890 -3.979 14.935 14.491 -4.967 -1.650 2.178 45.507 12.125 21.156 3 BB_DA3DG4:BRU5DT6_DD B 3 ? D 6 ? B 4 ? D 5 ? 1 B BRU 5 1_555 D DG 4 1_555 G DT 2 1_555 D DA 3 1_555 -2.849 3.731 3.924 -10.983 7.892 39.495 4.060 2.354 5.128 11.284 15.704 41.659 4 BG_BRU5DT2:DA3DG4_DD B 5 ? D 4 ? G 2 ? D 3 ? 1 G DT 2 1_555 D DA 3 1_555 G DA 3 1_555 D DT 2 1_555 0.119 -1.214 2.796 1.327 -12.236 32.364 -0.296 -0.012 3.046 -21.028 -2.280 34.567 5 GG_DT2DA3:DT2DA3_DD G 2 ? D 3 ? G 3 ? D 2 ? 1 G DA 3 1_555 D DT 2 1_555 G DG 4 1_555 B DT 6 1_555 4.358 2.872 3.390 9.305 45.250 52.717 0.027 -3.332 4.949 42.951 -8.832 68.985 6 GG_DA3DG4:DT6DT2_BD G 3 ? D 2 ? G 4 ? B 6 ? 1 G BRU 5 1_555 I DG 4 1_555 G DT 6 1_555 I DA 3 1_555 -0.531 0.364 2.778 8.389 12.607 20.850 -2.211 3.209 2.263 30.222 -20.111 25.720 7 GG_BRU5DT6:DA3DG4_II G 5 ? I 4 ? G 6 ? I 3 ? 1 G DT 6 1_555 I DA 3 1_555 H DA 3 1_555 J DT 6 1_555 0.072 1.767 4.274 0.860 -8.567 -28.424 -0.950 0.392 4.595 16.960 1.703 -29.674 8 GH_DT6DA3:DT6DA3_JI G 6 ? I 3 ? H 3 ? J 6 ? 1 H DA 3 1_555 J DT 6 1_555 H DG 4 1_555 J BRU 5 1_555 0.329 0.525 2.915 -5.448 14.225 17.039 -3.454 -2.662 2.430 39.286 15.047 22.818 9 HH_DA3DG4:BRU5DT6_JJ H 3 ? J 6 ? H 4 ? J 5 ? 1 M BRU 5 1_555 O DG 4 1_555 M DT 6 1_555 O DA 3 1_555 -0.562 0.399 2.956 6.209 11.903 20.385 -2.470 3.113 2.529 29.816 -15.553 24.370 10 MM_BRU5DT6:DA3DG4_OO M 5 ? O 4 ? M 6 ? O 3 ? 1 M DT 6 1_555 O DA 3 1_555 N DA 3 1_555 P DT 6 1_555 0.281 1.750 3.953 1.053 -9.003 -27.163 -0.902 0.877 4.287 18.526 2.166 -28.608 11 MN_DT6DA3:DT6DA3_PO M 6 ? O 3 ? N 3 ? P 6 ? 1 N DA 3 1_555 P DT 6 1_555 N DG 4 1_555 P BRU 5 1_555 0.165 0.237 2.934 -6.903 16.747 15.334 -4.566 -2.523 2.025 46.293 19.084 23.691 12 NN_DA3DG4:BRU5DT6_PP N 3 ? P 6 ? N 4 ? P 5 ? 1 N BRU 5 1_555 P DG 4 1_555 S DT 2 1_555 P DA 3 1_555 -2.484 3.704 3.402 -5.792 5.066 38.598 4.803 2.888 4.152 7.572 8.657 39.328 13 NS_BRU5DT2:DA3DG4_PP N 5 ? P 4 ? S 2 ? P 3 ? 1 S DT 2 1_555 P DA 3 1_555 S DA 3 1_555 P DT 2 1_555 -0.052 -0.902 3.120 -0.433 -8.449 34.568 -0.261 0.022 3.244 -13.962 0.716 35.557 14 SS_DT2DA3:DT2DA3_PP S 2 ? P 3 ? S 3 ? P 2 ? 1 S DA 3 1_555 P DT 2 1_555 S DG 4 1_555 N DT 6 1_555 4.290 3.280 3.019 8.485 37.922 48.547 0.727 -3.643 4.886 39.651 -8.872 61.439 15 SS_DA3DG4:DT6DT2_NP S 3 ? P 2 ? S 4 ? N 6 ? 1 S DG 4 1_555 N DT 6 1_555 S BRU 5 1_555 U DG 4 1_555 0.480 2.202 7.149 -2.503 3.188 21.863 3.035 -3.344 7.291 8.314 6.528 22.231 16 SS_DG4BRU5:DG4DT6_UN S 4 ? N 6 ? S 5 ? U 4 ? 1 S BRU 5 1_555 U DG 4 1_555 S DT 6 1_555 U DA 3 1_555 -0.291 0.053 2.965 7.549 8.114 24.409 -1.776 2.387 2.642 18.047 -16.792 26.773 17 SS_BRU5DT6:DA3DG4_UU S 5 ? U 4 ? S 6 ? U 3 ? 1 S DT 6 1_555 U DA 3 1_555 T DA 3 1_555 V DT 6 1_555 -0.330 1.578 4.017 -1.287 -5.457 -30.535 -1.619 -0.931 4.212 10.253 -2.418 -31.033 18 ST_DT6DA3:DT6DA3_VU S 6 ? U 3 ? T 3 ? V 6 ? 1 T DA 3 1_555 V DT 6 1_555 T DG 4 1_555 V BRU 5 1_555 0.918 0.673 3.136 -0.166 13.150 15.149 -4.407 -2.718 2.808 41.167 0.519 20.036 19 TT_DA3DG4:BRU5DT6_VV T 3 ? V 6 ? T 4 ? V 5 ? 1 T BRU 5 1_555 V DG 4 1_555 V DT 1 1_555 V DA 3 1_555 -2.862 2.438 -2.084 132.602 106.502 -53.466 -0.760 -2.011 -0.311 -54.958 68.426 -171.139 20 TV_BRU5DT1:DA3DG4_VV T 5 ? V 4 ? V 1 ? V 3 ? # _atom_sites.entry_id 1UNJ _atom_sites.fract_transf_matrix[1][1] 0.014041 _atom_sites.fract_transf_matrix[1][2] 0.008106 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016213 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009225 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_