HEADER FOUR HELIX BUNDLE 15-SEP-03 1UNU TITLE STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR TITLE 2 HELIX BUNDLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL CONTROL PROTEIN GCN4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GCN4 LEUCINE ZIPPER, AMINO ACID BIOSYNTHESIS REGULATORY COMPND 5 PROTEIN, PLI; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: DIMER ASYMMETRIC UNIT OF FOUR HELIX BUNDLE MUTATION COMPND 9 LEU9SER SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 4932; SOURCE 6 OTHER_DETAILS: BASED ON SEQUENCE FROM SACCHAROMYCES CEREVISIAE SOURCE 7 (BAKER'S YEAST) KEYWDS FOUR HELIX BUNDLE, CAVITY EXPDTA X-RAY DIFFRACTION AUTHOR M.K.YADAV,J.E.REDMAN,J.M.ALVAREZ-GUTIERREZ,Y.ZHANG,C.D.STOUT, AUTHOR 2 M.R.GHADIRI REVDAT 6 06-NOV-24 1UNU 1 REMARK REVDAT 5 08-MAY-24 1UNU 1 REMARK REVDAT 4 08-MAY-19 1UNU 1 REMARK REVDAT 3 24-FEB-09 1UNU 1 VERSN REVDAT 2 20-JUL-05 1UNU 1 AUTHOR JRNL REVDAT 1 13-OCT-04 1UNU 0 JRNL AUTH M.K.YADAV,J.E.REDMAN,L.J.LEMAN,J.M.ALVAREZ-GUTIERREZ, JRNL AUTH 2 Y.ZHANG,C.D.STOUT,M.R.GHADIRI JRNL TITL STRUCTURE-BASED ENGINEERING OF INTERNAL CAVITIES IN JRNL TITL 2 COILED-COIL PEPTIDES JRNL REF BIOCHEMISTRY V. 44 9723 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16008357 JRNL DOI 10.1021/BI050742A REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 5168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 245 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.203 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.314 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1290013485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 114.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5435 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 35.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.530 REMARK 200 R MERGE (I) : 0.02700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.39 REMARK 200 R MERGE FOR SHELL (I) : 0.22300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP, RESERVOIR: 10%W/V PEG REMARK 280 6K, 2 M NACL, PH 7.0, PH 7.00, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.24300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.24300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.24300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.24300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.24300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.24300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 39.24300 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 39.24300 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 39.24300 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 39.24300 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 39.24300 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 39.24300 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 39.24300 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 39.24300 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 39.24300 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 39.24300 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 39.24300 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 39.24300 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 58.86450 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 19.62150 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 19.62150 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 58.86450 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 58.86450 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 58.86450 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 19.62150 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 19.62150 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 58.86450 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 19.62150 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 58.86450 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 19.62150 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 58.86450 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 19.62150 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 19.62150 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 19.62150 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 58.86450 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 19.62150 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 58.86450 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 58.86450 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 58.86450 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 19.62150 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 19.62150 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 58.86450 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 58.86450 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 19.62150 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 19.62150 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 19.62150 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 19.62150 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 58.86450 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 19.62150 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 58.86450 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 19.62150 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 58.86450 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 58.86450 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 58.86450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 58.86450 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 58.86450 REMARK 350 BIOMT3 2 -1.000000 0.000000 0.000000 58.86450 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2004 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2006 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2002 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE VAL 257 SER, CHAINS A AND B REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ACE A -1 REMARK 465 ARG A 1 REMARK 465 ARG A 33 REMARK 465 ACE B -1 REMARK 465 ARG B 1 REMARK 465 ARG B 33 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CL CL A 1033 O HOH B 2004 8645 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 9 CB SER B 9 OG 0.085 REMARK 500 GLU B 22 CD GLU B 22 OE1 -0.087 REMARK 500 LYS B 28 CD LYS B 28 CE 0.187 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 25 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1033 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GCL RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER CORE MUTANT P-LI REMARK 900 RELATED ID: 1GCM RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER CORE MUTANT P-LI REMARK 900 RELATED ID: 1UNT RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UNV RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UNW RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UNX RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UNY RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UNZ RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO0 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO1 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO2 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO3 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO4 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO5 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES DBREF 1UNU A -1 -1 PDB 1UNU 1UNU -1 -1 DBREF 1UNU A 1 33 UNP P03069 GCN4_YEAST 249 281 DBREF 1UNU B -1 -1 PDB 1UNU 1UNU -1 -1 DBREF 1UNU B 1 33 UNP P03069 GCN4_YEAST 249 281 SEQADV 1UNU ILE A 5 UNP P03069 LEU 253 CONFLICT SEQADV 1UNU SER A 9 UNP P03069 VAL 257 ENGINEERED MUTATION SEQADV 1UNU ILE A 12 UNP P03069 LEU 260 CONFLICT SEQADV 1UNU LEU A 16 UNP P03069 ASN 264 CONFLICT SEQADV 1UNU ILE A 19 UNP P03069 LEU 267 CONFLICT SEQADV 1UNU LEU A 23 UNP P03069 VAL 271 CONFLICT SEQADV 1UNU ILE A 26 UNP P03069 LEU 274 CONFLICT SEQADV 1UNU LEU A 30 UNP P03069 VAL 278 CONFLICT SEQADV 1UNU ILE B 5 UNP P03069 LEU 253 CONFLICT SEQADV 1UNU SER B 9 UNP P03069 VAL 257 ENGINEERED MUTATION SEQADV 1UNU ILE B 12 UNP P03069 LEU 260 CONFLICT SEQADV 1UNU LEU B 16 UNP P03069 ASN 264 CONFLICT SEQADV 1UNU ILE B 19 UNP P03069 LEU 267 CONFLICT SEQADV 1UNU LEU B 23 UNP P03069 VAL 271 CONFLICT SEQADV 1UNU ILE B 26 UNP P03069 LEU 274 CONFLICT SEQADV 1UNU LEU B 30 UNP P03069 VAL 278 CONFLICT SEQRES 1 A 34 ACE ARG MET LYS GLN ILE GLU ASP LYS SER GLU GLU ILE SEQRES 2 A 34 LEU SER LYS LEU TYR HIS ILE GLU ASN GLU LEU ALA ARG SEQRES 3 A 34 ILE LYS LYS LEU LEU GLY GLU ARG SEQRES 1 B 34 ACE ARG MET LYS GLN ILE GLU ASP LYS SER GLU GLU ILE SEQRES 2 B 34 LEU SER LYS LEU TYR HIS ILE GLU ASN GLU LEU ALA ARG SEQRES 3 B 34 ILE LYS LYS LEU LEU GLY GLU ARG HET CL A1033 1 HETNAM CL CHLORIDE ION FORMUL 3 CL CL 1- FORMUL 4 HOH *28(H2 O) HELIX 1 1 MET A 2 GLY A 31 1 30 HELIX 2 2 MET B 2 GLY B 31 1 30 SITE 1 AC1 5 GLU A 10 LYS B 8 HIS B 18 ASN B 21 SITE 2 AC1 5 HOH B2004 CRYST1 78.486 78.486 78.486 90.00 90.00 90.00 P 41 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012741 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012741 0.00000