data_1UP9 # _entry.id 1UP9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1UP9 pdb_00001up9 10.2210/pdb1up9/pdb PDBE EBI-13475 ? ? WWPDB D_1290013475 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-09-30 2 'Structure model' 1 1 2011-12-28 3 'Structure model' 1 2 2019-05-22 4 'Structure model' 1 3 2023-12-13 5 'Structure model' 1 4 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Non-polymer description' 4 2 'Structure model' Other 5 2 'Structure model' 'Version format compliance' 6 3 'Structure model' Advisory 7 3 'Structure model' 'Data collection' 8 3 'Structure model' 'Derived calculations' 9 3 'Structure model' Other 10 3 'Structure model' 'Refinement description' 11 4 'Structure model' Advisory 12 4 'Structure model' 'Data collection' 13 4 'Structure model' 'Database references' 14 4 'Structure model' 'Derived calculations' 15 4 'Structure model' Other 16 4 'Structure model' 'Refinement description' 17 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_database_proc 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 4 3 'Structure model' refine 5 3 'Structure model' struct_conn 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' database_2 9 4 'Structure model' pdbx_database_status 10 4 'Structure model' pdbx_initial_refinement_model 11 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 12 4 'Structure model' struct_conn 13 4 'Structure model' struct_conn_type 14 4 'Structure model' struct_site 15 5 'Structure model' pdbx_entry_details 16 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 2 3 'Structure model' '_refine.pdbx_ls_cross_valid_method' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_pdbx_database_status.status_code_sf' 7 4 'Structure model' '_struct_conn.conn_type_id' 8 4 'Structure model' '_struct_conn.id' 9 4 'Structure model' '_struct_conn.pdbx_dist_value' 10 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 4 'Structure model' '_struct_conn_type.id' 20 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 21 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 22 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1UP9 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-09-29 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1GM4 unspecified 'OXIDISED STRUCTURE OF CYTOCHROME C3 FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 AT PH7.6' PDB 1GMB unspecified 'REDUCED STRUCTURE OF CYTOCHROME C3 FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 AT PH7.6' PDB 1I77 unspecified 'CYTOCHROME C3 FROM DESULFOVIBRIO DESULFURICANS ESSEX 6' PDB 1UPD unspecified 'OXIDIZED STRUCTURE OF CYTOCHROME C3 FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 AT PH 7.6' PDB 3CYR unspecified 'CYTOCHROME C3 FROM DESULFOVIBRIO DESULFURICANS ATCC 27774P' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bento, I.' 1 'Matias, P.M.' 2 'Baptista, A.M.' 3 'Da Costa, P.N.' 4 'Van Dongen, W.M.A.M.' 5 'Saraiva, L.M.' 6 'Schneider, T.R.' 7 'Soares, C.M.' 8 'Carrondo, M.A.' 9 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Molecular Basis for Redox-Bohr and Cooperative Effects in Cytochrome C3 from Desulfovibrio Desulfuricans Atcc 27774: Crystallographic and Modeling Studies of Oxidized and Reduced High-Resolution Structures at Ph 7.6 ; Proteins 54 135 ? 2004 PSFGEY US 0887-3585 0867 ? 14705030 10.1002/PROT.10431 1 'Conformational Component in the Coupled Transfer of Multiple Electrons and Protons in a Monomeric Tetraheme Cytochrome' J.Biol.Chem. 276 44044 ? 2001 JBCHA3 US 0021-9258 0071 ? 11551953 10.1074/JBC.M107136200 2 ;Refinement of the Three-Dimensional Structures of Cytochrome C3 from Desulfovibrio Vulgaris Hildenborough at 1.67 A Resolution and from Desulfovibrio Desulfuricans Atcc 27774 at 1.6 A Resolution ; Inorg.Chim.Acta. 273 213 ? 1998 ICHAA3 SZ 0020-1693 0155 ? ? '10.1016/S0020-1693(97)06018-0' 3 ;Structure of the Tetraheme Cytochrome from Desulfovibrio Desulfuricans Atcc 27774: X-Ray Diffraction and Electron Paramagnetic Resonance Studies ; Biochemistry 34 12830 ? 1995 BICHAW US 0006-2960 0033 ? 7548038 10.1021/BI00039A044 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bento, I.' 1 ? primary 'Matias, P.M.' 2 ? primary 'Baptista, A.M.' 3 ? primary 'Da Costa, P.N.' 4 ? primary 'Van Dongen, W.M.A.M.' 5 ? primary 'Saraiva, L.M.' 6 ? primary 'Schneider, T.R.' 7 ? primary 'Soares, C.M.' 8 ? primary 'Carrondo, M.A.' 9 ? 1 'Louro, R.O.' 10 ? 1 'Bento, I.' 11 ? 1 'Matias, P.M.' 12 ? 1 'Catarino, T.' 13 ? 1 'Baptista, A.M.' 14 ? 1 'Soares, C.M.' 15 ? 1 'Carrondo, M.A.' 16 ? 1 'Turner, D.L.' 17 ? 1 'Xavier, A.V.' 18 ? 2 'Simoes, P.' 19 ? 2 'Matias, P.M.' 20 ? 2 'Morais, J.' 21 ? 2 'Wilson, K.' 22 ? 2 'Dauter, Z.' 23 ? 2 'Carrondo, M.A.' 24 ? 3 'Morais, J.' 25 ? 3 'Palma, P.N.' 26 ? 3 'Frazao, C.' 27 ? 3 'Caldeira, J.' 28 ? 3 'Legall, J.' 29 ? 3 'Moura, I.' 30 ? 3 'Moura, J.J.' 31 ? 3 'Carrondo, M.A.' 32 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'CYTOCHROME C3' 11618.471 1 ? ? ? ? 2 non-polymer syn 'HEME C' 618.503 4 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 144 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;APAVPDKPVEVKGSQKTVMFPHAPHEKVECVTCHHLVDGKESYAKCGSSGCHDDLTAKKGEKSLYYVVHARGELKHTSCL ACHSKVVAEKPELKKDLTGCAKSKCHP ; _entity_poly.pdbx_seq_one_letter_code_can ;APAVPDKPVEVKGSQKTVMFPHAPHEKVECVTCHHLVDGKESYAKCGSSGCHDDLTAKKGEKSLYYVVHARGELKHTSCL ACHSKVVAEKPELKKDLTGCAKSKCHP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'HEME C' HEC 3 'SULFATE ION' SO4 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PRO n 1 3 ALA n 1 4 VAL n 1 5 PRO n 1 6 ASP n 1 7 LYS n 1 8 PRO n 1 9 VAL n 1 10 GLU n 1 11 VAL n 1 12 LYS n 1 13 GLY n 1 14 SER n 1 15 GLN n 1 16 LYS n 1 17 THR n 1 18 VAL n 1 19 MET n 1 20 PHE n 1 21 PRO n 1 22 HIS n 1 23 ALA n 1 24 PRO n 1 25 HIS n 1 26 GLU n 1 27 LYS n 1 28 VAL n 1 29 GLU n 1 30 CYS n 1 31 VAL n 1 32 THR n 1 33 CYS n 1 34 HIS n 1 35 HIS n 1 36 LEU n 1 37 VAL n 1 38 ASP n 1 39 GLY n 1 40 LYS n 1 41 GLU n 1 42 SER n 1 43 TYR n 1 44 ALA n 1 45 LYS n 1 46 CYS n 1 47 GLY n 1 48 SER n 1 49 SER n 1 50 GLY n 1 51 CYS n 1 52 HIS n 1 53 ASP n 1 54 ASP n 1 55 LEU n 1 56 THR n 1 57 ALA n 1 58 LYS n 1 59 LYS n 1 60 GLY n 1 61 GLU n 1 62 LYS n 1 63 SER n 1 64 LEU n 1 65 TYR n 1 66 TYR n 1 67 VAL n 1 68 VAL n 1 69 HIS n 1 70 ALA n 1 71 ARG n 1 72 GLY n 1 73 GLU n 1 74 LEU n 1 75 LYS n 1 76 HIS n 1 77 THR n 1 78 SER n 1 79 CYS n 1 80 LEU n 1 81 ALA n 1 82 CYS n 1 83 HIS n 1 84 SER n 1 85 LYS n 1 86 VAL n 1 87 VAL n 1 88 ALA n 1 89 GLU n 1 90 LYS n 1 91 PRO n 1 92 GLU n 1 93 LEU n 1 94 LYS n 1 95 LYS n 1 96 ASP n 1 97 LEU n 1 98 THR n 1 99 GLY n 1 100 CYS n 1 101 ALA n 1 102 LYS n 1 103 SER n 1 104 LYS n 1 105 CYS n 1 106 HIS n 1 107 PRO n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'DESULFOVIBRIO DESULFURICANS' _entity_src_nat.pdbx_ncbi_taxonomy_id 876 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc 27774 _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEC non-polymer . 'HEME C' ? 'C34 H34 Fe N4 O4' 618.503 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 MET 19 19 19 MET MET A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 HIS 25 25 25 HIS HIS A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 CYS 33 33 33 CYS CYS A . n A 1 34 HIS 34 34 34 HIS HIS A . n A 1 35 HIS 35 35 35 HIS HIS A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 CYS 46 46 46 CYS CYS A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 HIS 52 52 52 HIS HIS A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 HIS 76 76 76 HIS HIS A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 CYS 79 79 79 CYS CYS A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 CYS 82 82 82 CYS CYS A . n A 1 83 HIS 83 83 83 HIS HIS A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 CYS 100 100 100 CYS CYS A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 CYS 105 105 105 CYS CYS A . n A 1 106 HIS 106 106 106 HIS HIS A . n A 1 107 PRO 107 107 107 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC 1 201 201 HEC HEC A . C 2 HEC 1 202 202 HEC HEC A . D 2 HEC 1 203 203 HEC HEC A . E 2 HEC 1 204 204 HEC HEC A . F 3 SO4 1 205 205 SO4 SO4 A . G 4 HOH 1 2001 2001 HOH HOH A . G 4 HOH 2 2002 2002 HOH HOH A . G 4 HOH 3 2003 2003 HOH HOH A . G 4 HOH 4 2004 2004 HOH HOH A . G 4 HOH 5 2005 2005 HOH HOH A . G 4 HOH 6 2006 2006 HOH HOH A . G 4 HOH 7 2007 2007 HOH HOH A . G 4 HOH 8 2008 2008 HOH HOH A . G 4 HOH 9 2009 2009 HOH HOH A . G 4 HOH 10 2010 2010 HOH HOH A . G 4 HOH 11 2011 2011 HOH HOH A . G 4 HOH 12 2012 2012 HOH HOH A . G 4 HOH 13 2013 2013 HOH HOH A . G 4 HOH 14 2014 2014 HOH HOH A . G 4 HOH 15 2015 2015 HOH HOH A . G 4 HOH 16 2016 2016 HOH HOH A . G 4 HOH 17 2017 2017 HOH HOH A . G 4 HOH 18 2018 2018 HOH HOH A . G 4 HOH 19 2019 2019 HOH HOH A . G 4 HOH 20 2020 2020 HOH HOH A . G 4 HOH 21 2021 2021 HOH HOH A . G 4 HOH 22 2022 2022 HOH HOH A . G 4 HOH 23 2023 2023 HOH HOH A . G 4 HOH 24 2024 2024 HOH HOH A . G 4 HOH 25 2025 2025 HOH HOH A . G 4 HOH 26 2026 2026 HOH HOH A . G 4 HOH 27 2027 2027 HOH HOH A . G 4 HOH 28 2028 2028 HOH HOH A . G 4 HOH 29 2029 2029 HOH HOH A . G 4 HOH 30 2030 2030 HOH HOH A . G 4 HOH 31 2031 2031 HOH HOH A . G 4 HOH 32 2032 2032 HOH HOH A . G 4 HOH 33 2033 2033 HOH HOH A . G 4 HOH 34 2034 2034 HOH HOH A . G 4 HOH 35 2035 2035 HOH HOH A . G 4 HOH 36 2036 2036 HOH HOH A . G 4 HOH 37 2037 2037 HOH HOH A . G 4 HOH 38 2038 2038 HOH HOH A . G 4 HOH 39 2039 2039 HOH HOH A . G 4 HOH 40 2040 2040 HOH HOH A . G 4 HOH 41 2041 2041 HOH HOH A . G 4 HOH 42 2042 2042 HOH HOH A . G 4 HOH 43 2043 2043 HOH HOH A . G 4 HOH 44 2044 2044 HOH HOH A . G 4 HOH 45 2045 2045 HOH HOH A . G 4 HOH 46 2046 2046 HOH HOH A . G 4 HOH 47 2047 2047 HOH HOH A . G 4 HOH 48 2048 2048 HOH HOH A . G 4 HOH 49 2049 2049 HOH HOH A . G 4 HOH 50 2050 2050 HOH HOH A . G 4 HOH 51 2051 2051 HOH HOH A . G 4 HOH 52 2052 2052 HOH HOH A . G 4 HOH 53 2053 2053 HOH HOH A . G 4 HOH 54 2054 2054 HOH HOH A . G 4 HOH 55 2055 2055 HOH HOH A . G 4 HOH 56 2056 2056 HOH HOH A . G 4 HOH 57 2057 2057 HOH HOH A . G 4 HOH 58 2058 2058 HOH HOH A . G 4 HOH 59 2059 2059 HOH HOH A . G 4 HOH 60 2060 2060 HOH HOH A . G 4 HOH 61 2061 2061 HOH HOH A . G 4 HOH 62 2062 2062 HOH HOH A . G 4 HOH 63 2063 2063 HOH HOH A . G 4 HOH 64 2064 2064 HOH HOH A . G 4 HOH 65 2065 2065 HOH HOH A . G 4 HOH 66 2066 2066 HOH HOH A . G 4 HOH 67 2067 2067 HOH HOH A . G 4 HOH 68 2068 2068 HOH HOH A . G 4 HOH 69 2069 2069 HOH HOH A . G 4 HOH 70 2070 2070 HOH HOH A . G 4 HOH 71 2071 2071 HOH HOH A . G 4 HOH 72 2072 2072 HOH HOH A . G 4 HOH 73 2073 2073 HOH HOH A . G 4 HOH 74 2074 2074 HOH HOH A . G 4 HOH 75 2075 2075 HOH HOH A . G 4 HOH 76 2076 2076 HOH HOH A . G 4 HOH 77 2077 2077 HOH HOH A . G 4 HOH 78 2078 2078 HOH HOH A . G 4 HOH 79 2079 2079 HOH HOH A . G 4 HOH 80 2080 2080 HOH HOH A . G 4 HOH 81 2081 2081 HOH HOH A . G 4 HOH 82 2082 2082 HOH HOH A . G 4 HOH 83 2083 2083 HOH HOH A . G 4 HOH 84 2084 2084 HOH HOH A . G 4 HOH 85 2085 2085 HOH HOH A . G 4 HOH 86 2086 2086 HOH HOH A . G 4 HOH 87 2087 2087 HOH HOH A . G 4 HOH 88 2088 2088 HOH HOH A . G 4 HOH 89 2089 2089 HOH HOH A . G 4 HOH 90 2090 2090 HOH HOH A . G 4 HOH 91 2091 2091 HOH HOH A . G 4 HOH 92 2092 2092 HOH HOH A . G 4 HOH 93 2093 2093 HOH HOH A . G 4 HOH 94 2094 2094 HOH HOH A . G 4 HOH 95 2095 2095 HOH HOH A . G 4 HOH 96 2096 2096 HOH HOH A . G 4 HOH 97 2097 2097 HOH HOH A . G 4 HOH 98 2098 2098 HOH HOH A . G 4 HOH 99 2099 2099 HOH HOH A . G 4 HOH 100 2100 2100 HOH HOH A . G 4 HOH 101 2101 2101 HOH HOH A . G 4 HOH 102 2102 2102 HOH HOH A . G 4 HOH 103 2103 2103 HOH HOH A . G 4 HOH 104 2104 2104 HOH HOH A . G 4 HOH 105 2105 2105 HOH HOH A . G 4 HOH 106 2106 2106 HOH HOH A . G 4 HOH 107 2107 2107 HOH HOH A . G 4 HOH 108 2108 2108 HOH HOH A . G 4 HOH 109 2109 2109 HOH HOH A . G 4 HOH 110 2110 2110 HOH HOH A . G 4 HOH 111 2111 2111 HOH HOH A . G 4 HOH 112 2112 2112 HOH HOH A . G 4 HOH 113 2113 2113 HOH HOH A . G 4 HOH 114 2114 2114 HOH HOH A . G 4 HOH 115 2115 2115 HOH HOH A . G 4 HOH 116 2116 2116 HOH HOH A . G 4 HOH 117 2117 2117 HOH HOH A . G 4 HOH 118 2118 2118 HOH HOH A . G 4 HOH 119 2119 2119 HOH HOH A . G 4 HOH 120 2120 2120 HOH HOH A . G 4 HOH 121 2121 2121 HOH HOH A . G 4 HOH 122 2122 2122 HOH HOH A . G 4 HOH 123 2123 2123 HOH HOH A . G 4 HOH 124 2124 2124 HOH HOH A . G 4 HOH 125 2125 2125 HOH HOH A . G 4 HOH 126 2126 2126 HOH HOH A . G 4 HOH 127 2127 2127 HOH HOH A . G 4 HOH 128 2128 2128 HOH HOH A . G 4 HOH 129 2129 2129 HOH HOH A . G 4 HOH 130 2130 2130 HOH HOH A . G 4 HOH 131 2131 2131 HOH HOH A . G 4 HOH 132 2132 2132 HOH HOH A . G 4 HOH 133 2133 2133 HOH HOH A . G 4 HOH 134 2134 2134 HOH HOH A . G 4 HOH 135 2135 2135 HOH HOH A . G 4 HOH 136 2136 2136 HOH HOH A . G 4 HOH 137 2137 2137 HOH HOH A . G 4 HOH 138 2138 2138 HOH HOH A . G 4 HOH 139 2139 2139 HOH HOH A . G 4 HOH 140 2140 2140 HOH HOH A . G 4 HOH 141 2141 2141 HOH HOH A . G 4 HOH 142 2142 2142 HOH HOH A . G 4 HOH 143 2143 2143 HOH HOH A . G 4 HOH 144 2144 2144 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 40 ? CE ? A LYS 40 CE 2 1 Y 0 A LYS 40 ? NZ ? A LYS 40 NZ 3 1 Y 0 A LYS 58 ? CD ? A LYS 58 CD 4 1 Y 0 A LYS 58 ? CE ? A LYS 58 CE 5 1 Y 0 A LYS 58 ? NZ ? A LYS 58 NZ 6 1 Y 0 A LYS 59 ? CD ? A LYS 59 CD 7 1 Y 0 A LYS 59 ? CE ? A LYS 59 CE 8 1 Y 0 A LYS 59 ? NZ ? A LYS 59 NZ 9 1 Y 0 A LYS 62 ? CE ? A LYS 62 CE 10 1 Y 0 A LYS 62 ? NZ ? A LYS 62 NZ 11 1 Y 0 A ARG 71 ? CG ? A ARG 71 CG 12 1 Y 0 A ARG 71 ? CD ? A ARG 71 CD 13 1 Y 0 A ARG 71 ? NE ? A ARG 71 NE 14 1 Y 0 A ARG 71 ? CZ ? A ARG 71 CZ 15 1 Y 0 A ARG 71 ? NH1 ? A ARG 71 NH1 16 1 Y 0 A ARG 71 ? NH2 ? A ARG 71 NH2 17 1 Y 0 A LYS 102 ? CD ? A LYS 102 CD 18 1 Y 0 A LYS 102 ? CE ? A LYS 102 CE 19 1 Y 0 A LYS 102 ? NZ ? A LYS 102 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _cell.entry_id 1UP9 _cell.length_a 61.360 _cell.length_b 61.360 _cell.length_c 106.920 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UP9 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # _exptl.entry_id 1UP9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.86 _exptl_crystal.density_percent_sol 34 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.60 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.60' # _diffrn.id 1 _diffrn.ambient_temp 110.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details 'TOROIDAL MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DIAMOND (III) CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-3' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-3 _diffrn_source.pdbx_wavelength 0.931 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1UP9 _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 1.350 _reflns.number_obs 26954 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.03300 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.140 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.35 _reflns_shell.d_res_low 1.38 _reflns_shell.percent_possible_all 96.8 _reflns_shell.Rmerge_I_obs 0.18300 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1UP9 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 25470 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.0 _refine.ls_d_res_high 1.35 _refine.ls_percent_reflns_obs 94.7 _refine.ls_R_factor_obs 0.1586 _refine.ls_R_factor_all 0.1526 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.2027 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.3 _refine.ls_number_reflns_R_free 1346 _refine.ls_number_parameters 10545 _refine.ls_number_restraints 13944 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3CYR' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1UP9 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 14 _refine_analyze.occupancy_sum_hydrogen 0.0 _refine_analyze.occupancy_sum_non_hydrogen 1107.54 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 808 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 177 _refine_hist.number_atoms_solvent 144 _refine_hist.number_atoms_total 1129 _refine_hist.d_res_high 1.35 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.029 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.012 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.029 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.071 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.075 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.015 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.004 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.042 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.069 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1UP9 _pdbx_refine.R_factor_all_no_cutoff 0.1526 _pdbx_refine.R_factor_obs_no_cutoff 0.1586 _pdbx_refine.free_R_factor_no_cutoff 0.2027 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.3 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1346 _pdbx_refine.R_factor_all_4sig_cutoff 0.1465 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1522 _pdbx_refine.free_R_factor_4sig_cutoff 0.1941 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.3 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1250 _pdbx_refine.number_reflns_obs_4sig_cutoff 23463 # _database_PDB_matrix.entry_id 1UP9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1UP9 _struct.title 'REDUCED STRUCTURE OF CYTOCHROME C3 FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 AT PH 7.6' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1UP9 _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'ELECTRON TRANSPORT, TETRAHEME CYTOCHROME C' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9L915_DESDE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q9L915 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1UP9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 107 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9L915 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 128 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 107 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1UP9 _struct_ref_seq_dif.mon_id ARG _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 71 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9L915 _struct_ref_seq_dif.db_mon_id LYS _struct_ref_seq_dif.pdbx_seq_db_seq_num 92 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 71 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 22 ? GLU A 26 ? HIS A 22 GLU A 26 5 ? 5 HELX_P HELX_P2 2 GLU A 29 ? HIS A 34 ? GLU A 29 HIS A 34 1 ? 6 HELX_P HELX_P3 3 SER A 63 ? ALA A 70 ? SER A 63 ALA A 70 1 ? 8 HELX_P HELX_P4 4 SER A 78 ? LYS A 90 ? SER A 78 LYS A 90 1 ? 13 HELX_P HELX_P5 5 LEU A 93 ? GLY A 99 ? LEU A 93 GLY A 99 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 30 SG ? ? ? 1_555 B HEC . CAB ? ? A CYS 30 A HEC 201 1_555 ? ? ? ? ? ? ? 1.835 ? ? covale2 covale none ? A CYS 33 SG ? ? ? 1_555 B HEC . CAC ? ? A CYS 33 A HEC 201 1_555 ? ? ? ? ? ? ? 1.817 ? ? covale3 covale none ? A CYS 46 SG ? ? ? 1_555 C HEC . CAB ? ? A CYS 46 A HEC 202 1_555 ? ? ? ? ? ? ? 1.806 ? ? covale4 covale none ? A CYS 51 SG ? ? ? 1_555 C HEC . CAC ? ? A CYS 51 A HEC 202 1_555 ? ? ? ? ? ? ? 1.819 ? ? covale5 covale none ? A CYS 79 SG ? ? ? 1_555 D HEC . CAB ? ? A CYS 79 A HEC 203 1_555 ? ? ? ? ? ? ? 1.820 ? ? covale6 covale none ? A CYS 82 SG ? ? ? 1_555 D HEC . CAC ? ? A CYS 82 A HEC 203 1_555 ? ? ? ? ? ? ? 1.828 ? ? covale7 covale none ? A CYS 100 SG ? ? ? 1_555 E HEC . CAB ? ? A CYS 100 A HEC 204 1_555 ? ? ? ? ? ? ? 1.807 ? ? covale8 covale none ? A CYS 105 SG ? ? ? 1_555 E HEC . CAC ? ? A CYS 105 A HEC 204 1_555 ? ? ? ? ? ? ? 1.822 ? ? metalc1 metalc ? ? A HIS 22 NE2 ? ? ? 1_555 B HEC . FE ? ? A HIS 22 A HEC 201 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc2 metalc ? ? A HIS 25 NE2 ? ? ? 1_555 D HEC . FE ? ? A HIS 25 A HEC 203 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc3 metalc ? ? A HIS 34 NE2 ? ? ? 1_555 B HEC . FE ? ? A HIS 34 A HEC 201 1_555 ? ? ? ? ? ? ? 1.992 ? ? metalc4 metalc ? ? A HIS 35 NE2 ? ? ? 1_555 C HEC . FE ? ? A HIS 35 A HEC 202 1_555 ? ? ? ? ? ? ? 2.029 ? ? metalc5 metalc ? ? A HIS 52 NE2 ? ? ? 1_555 C HEC . FE ? ? A HIS 52 A HEC 202 1_555 ? ? ? ? ? ? ? 2.022 ? ? metalc6 metalc ? ? A HIS 69 NE2 ? ? ? 1_555 E HEC . FE ? ? A HIS 69 A HEC 204 1_555 ? ? ? ? ? ? ? 2.015 ? ? metalc7 metalc ? ? A HIS 83 NE2 ? ? ? 1_555 D HEC . FE ? ? A HIS 83 A HEC 203 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc8 metalc ? ? A HIS 106 NE2 ? ? ? 1_555 E HEC . FE ? ? A HIS 106 A HEC 204 1_555 ? ? ? ? ? ? ? 2.011 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 22 ? A HIS 22 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NA ? B HEC . ? A HEC 201 ? 1_555 90.6 ? 2 NE2 ? A HIS 22 ? A HIS 22 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NB ? B HEC . ? A HEC 201 ? 1_555 91.9 ? 3 NA ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NB ? B HEC . ? A HEC 201 ? 1_555 90.5 ? 4 NE2 ? A HIS 22 ? A HIS 22 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NC ? B HEC . ? A HEC 201 ? 1_555 89.3 ? 5 NA ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NC ? B HEC . ? A HEC 201 ? 1_555 179.5 ? 6 NB ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NC ? B HEC . ? A HEC 201 ? 1_555 89.9 ? 7 NE2 ? A HIS 22 ? A HIS 22 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 ND ? B HEC . ? A HEC 201 ? 1_555 88.7 ? 8 NA ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 ND ? B HEC . ? A HEC 201 ? 1_555 89.5 ? 9 NB ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 ND ? B HEC . ? A HEC 201 ? 1_555 179.4 ? 10 NC ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 ND ? B HEC . ? A HEC 201 ? 1_555 90.0 ? 11 NE2 ? A HIS 22 ? A HIS 22 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NE2 ? A HIS 34 ? A HIS 34 ? 1_555 177.5 ? 12 NA ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NE2 ? A HIS 34 ? A HIS 34 ? 1_555 90.8 ? 13 NB ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NE2 ? A HIS 34 ? A HIS 34 ? 1_555 90.2 ? 14 NC ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NE2 ? A HIS 34 ? A HIS 34 ? 1_555 89.3 ? 15 ND ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NE2 ? A HIS 34 ? A HIS 34 ? 1_555 89.2 ? 16 NE2 ? A HIS 25 ? A HIS 25 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 NA ? D HEC . ? A HEC 203 ? 1_555 90.8 ? 17 NE2 ? A HIS 25 ? A HIS 25 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 NB ? D HEC . ? A HEC 203 ? 1_555 90.1 ? 18 NA ? D HEC . ? A HEC 203 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 NB ? D HEC . ? A HEC 203 ? 1_555 88.8 ? 19 NE2 ? A HIS 25 ? A HIS 25 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 NC ? D HEC . ? A HEC 203 ? 1_555 89.5 ? 20 NA ? D HEC . ? A HEC 203 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 NC ? D HEC . ? A HEC 203 ? 1_555 179.5 ? 21 NB ? D HEC . ? A HEC 203 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 NC ? D HEC . ? A HEC 203 ? 1_555 90.8 ? 22 NE2 ? A HIS 25 ? A HIS 25 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 ND ? D HEC . ? A HEC 203 ? 1_555 88.7 ? 23 NA ? D HEC . ? A HEC 203 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 ND ? D HEC . ? A HEC 203 ? 1_555 90.5 ? 24 NB ? D HEC . ? A HEC 203 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 ND ? D HEC . ? A HEC 203 ? 1_555 178.6 ? 25 NC ? D HEC . ? A HEC 203 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 ND ? D HEC . ? A HEC 203 ? 1_555 89.9 ? 26 NE2 ? A HIS 25 ? A HIS 25 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 NE2 ? A HIS 83 ? A HIS 83 ? 1_555 179.4 ? 27 NA ? D HEC . ? A HEC 203 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 NE2 ? A HIS 83 ? A HIS 83 ? 1_555 88.6 ? 28 NB ? D HEC . ? A HEC 203 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 NE2 ? A HIS 83 ? A HIS 83 ? 1_555 90.0 ? 29 NC ? D HEC . ? A HEC 203 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 NE2 ? A HIS 83 ? A HIS 83 ? 1_555 91.1 ? 30 ND ? D HEC . ? A HEC 203 ? 1_555 FE ? D HEC . ? A HEC 203 ? 1_555 NE2 ? A HIS 83 ? A HIS 83 ? 1_555 91.1 ? 31 NE2 ? A HIS 35 ? A HIS 35 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 NA ? C HEC . ? A HEC 202 ? 1_555 89.5 ? 32 NE2 ? A HIS 35 ? A HIS 35 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 NB ? C HEC . ? A HEC 202 ? 1_555 91.3 ? 33 NA ? C HEC . ? A HEC 202 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 NB ? C HEC . ? A HEC 202 ? 1_555 89.6 ? 34 NE2 ? A HIS 35 ? A HIS 35 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 NC ? C HEC . ? A HEC 202 ? 1_555 90.0 ? 35 NA ? C HEC . ? A HEC 202 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 NC ? C HEC . ? A HEC 202 ? 1_555 178.6 ? 36 NB ? C HEC . ? A HEC 202 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 NC ? C HEC . ? A HEC 202 ? 1_555 89.1 ? 37 NE2 ? A HIS 35 ? A HIS 35 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 ND ? C HEC . ? A HEC 202 ? 1_555 89.5 ? 38 NA ? C HEC . ? A HEC 202 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 ND ? C HEC . ? A HEC 202 ? 1_555 91.9 ? 39 NB ? C HEC . ? A HEC 202 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 ND ? C HEC . ? A HEC 202 ? 1_555 178.4 ? 40 NC ? C HEC . ? A HEC 202 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 ND ? C HEC . ? A HEC 202 ? 1_555 89.5 ? 41 NE2 ? A HIS 35 ? A HIS 35 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 NE2 ? A HIS 52 ? A HIS 52 ? 1_555 177.0 ? 42 NA ? C HEC . ? A HEC 202 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 NE2 ? A HIS 52 ? A HIS 52 ? 1_555 89.0 ? 43 NB ? C HEC . ? A HEC 202 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 NE2 ? A HIS 52 ? A HIS 52 ? 1_555 91.4 ? 44 NC ? C HEC . ? A HEC 202 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 NE2 ? A HIS 52 ? A HIS 52 ? 1_555 91.5 ? 45 ND ? C HEC . ? A HEC 202 ? 1_555 FE ? C HEC . ? A HEC 202 ? 1_555 NE2 ? A HIS 52 ? A HIS 52 ? 1_555 87.9 ? 46 NE2 ? A HIS 69 ? A HIS 69 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 NA ? E HEC . ? A HEC 204 ? 1_555 89.3 ? 47 NE2 ? A HIS 69 ? A HIS 69 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 NB ? E HEC . ? A HEC 204 ? 1_555 89.2 ? 48 NA ? E HEC . ? A HEC 204 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 NB ? E HEC . ? A HEC 204 ? 1_555 89.9 ? 49 NE2 ? A HIS 69 ? A HIS 69 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 NC ? E HEC . ? A HEC 204 ? 1_555 92.4 ? 50 NA ? E HEC . ? A HEC 204 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 NC ? E HEC . ? A HEC 204 ? 1_555 178.3 ? 51 NB ? E HEC . ? A HEC 204 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 NC ? E HEC . ? A HEC 204 ? 1_555 90.5 ? 52 NE2 ? A HIS 69 ? A HIS 69 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 ND ? E HEC . ? A HEC 204 ? 1_555 85.5 ? 53 NA ? E HEC . ? A HEC 204 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 ND ? E HEC . ? A HEC 204 ? 1_555 89.0 ? 54 NB ? E HEC . ? A HEC 204 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 ND ? E HEC . ? A HEC 204 ? 1_555 174.6 ? 55 NC ? E HEC . ? A HEC 204 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 ND ? E HEC . ? A HEC 204 ? 1_555 90.8 ? 56 NE2 ? A HIS 69 ? A HIS 69 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 NE2 ? A HIS 106 ? A HIS 106 ? 1_555 178.4 ? 57 NA ? E HEC . ? A HEC 204 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 NE2 ? A HIS 106 ? A HIS 106 ? 1_555 92.4 ? 58 NB ? E HEC . ? A HEC 204 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 NE2 ? A HIS 106 ? A HIS 106 ? 1_555 90.7 ? 59 NC ? E HEC . ? A HEC 204 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 NE2 ? A HIS 106 ? A HIS 106 ? 1_555 86.0 ? 60 ND ? E HEC . ? A HEC 204 ? 1_555 FE ? E HEC . ? A HEC 204 ? 1_555 NE2 ? A HIS 106 ? A HIS 106 ? 1_555 94.6 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 HEC B . ? CYS A 30 ? HEC A 201 ? 1_555 CYS A 30 ? 1_555 CAB SG CYS 2 HEC None Heme/heme-like 2 HEC B . ? CYS A 33 ? HEC A 201 ? 1_555 CYS A 33 ? 1_555 CAC SG CYS 3 HEC None Heme/heme-like 3 HEC C . ? CYS A 46 ? HEC A 202 ? 1_555 CYS A 46 ? 1_555 CAB SG CYS 2 HEC None Heme/heme-like 4 HEC C . ? CYS A 51 ? HEC A 202 ? 1_555 CYS A 51 ? 1_555 CAC SG CYS 3 HEC None Heme/heme-like 5 HEC D . ? CYS A 79 ? HEC A 203 ? 1_555 CYS A 79 ? 1_555 CAB SG CYS 2 HEC None Heme/heme-like 6 HEC D . ? CYS A 82 ? HEC A 203 ? 1_555 CYS A 82 ? 1_555 CAC SG CYS 3 HEC None Heme/heme-like 7 HEC E . ? CYS A 100 ? HEC A 204 ? 1_555 CYS A 100 ? 1_555 CAB SG CYS 2 HEC None Heme/heme-like 8 HEC E . ? CYS A 105 ? HEC A 204 ? 1_555 CYS A 105 ? 1_555 CAC SG CYS 3 HEC None Heme/heme-like # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 9 ? LYS A 12 ? VAL A 9 LYS A 12 AA 2 THR A 17 ? PHE A 20 ? THR A 17 PHE A 20 # _pdbx_struct_sheet_hbond.sheet_id AA _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 11 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 11 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 18 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 18 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 205 ? 11 'BINDING SITE FOR RESIDUE SO4 A 205' AC2 Software A HEC 201 ? 20 'BINDING SITE FOR RESIDUE HEC A 201' AC3 Software A HEC 202 ? 15 'BINDING SITE FOR RESIDUE HEC A 202' AC4 Software A HEC 203 ? 18 'BINDING SITE FOR RESIDUE HEC A 203' AC5 Software A HEC 204 ? 21 'BINDING SITE FOR RESIDUE HEC A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 ASP A 6 ? ASP A 6 . ? 1_555 ? 2 AC1 11 LYS A 7 ? LYS A 7 . ? 1_555 ? 3 AC1 11 PRO A 8 ? PRO A 8 . ? 1_555 ? 4 AC1 11 PRO A 21 ? PRO A 21 . ? 1_555 ? 5 AC1 11 HIS A 22 ? HIS A 22 . ? 1_555 ? 6 AC1 11 ALA A 23 ? ALA A 23 . ? 1_555 ? 7 AC1 11 PRO A 24 ? PRO A 24 . ? 1_555 ? 8 AC1 11 LYS A 90 ? LYS A 90 . ? 5_454 ? 9 AC1 11 HOH G . ? HOH A 2030 . ? 1_555 ? 10 AC1 11 HOH G . ? HOH A 2143 . ? 1_555 ? 11 AC1 11 HOH G . ? HOH A 2144 . ? 1_555 ? 12 AC2 20 PRO A 2 ? PRO A 2 . ? 1_555 ? 13 AC2 20 ALA A 3 ? ALA A 3 . ? 1_555 ? 14 AC2 20 PRO A 5 ? PRO A 5 . ? 1_555 ? 15 AC2 20 GLU A 10 ? GLU A 10 . ? 1_555 ? 16 AC2 20 PHE A 20 ? PHE A 20 . ? 1_555 ? 17 AC2 20 HIS A 22 ? HIS A 22 . ? 1_555 ? 18 AC2 20 HIS A 25 ? HIS A 25 . ? 1_555 ? 19 AC2 20 VAL A 28 ? VAL A 28 . ? 1_555 ? 20 AC2 20 GLU A 29 ? GLU A 29 . ? 1_555 ? 21 AC2 20 CYS A 30 ? CYS A 30 . ? 1_555 ? 22 AC2 20 CYS A 33 ? CYS A 33 . ? 1_555 ? 23 AC2 20 HIS A 34 ? HIS A 34 . ? 1_555 ? 24 AC2 20 TYR A 43 ? TYR A 43 . ? 1_555 ? 25 AC2 20 ALA A 44 ? ALA A 44 . ? 1_555 ? 26 AC2 20 LYS A 45 ? LYS A 45 . ? 1_555 ? 27 AC2 20 CYS A 46 ? CYS A 46 . ? 1_555 ? 28 AC2 20 HEC D . ? HEC A 203 . ? 1_555 ? 29 AC2 20 HOH G . ? HOH A 2067 . ? 1_555 ? 30 AC2 20 HOH G . ? HOH A 2134 . ? 1_555 ? 31 AC2 20 HOH G . ? HOH A 2135 . ? 1_555 ? 32 AC3 15 CYS A 33 ? CYS A 33 . ? 1_555 ? 33 AC3 15 HIS A 35 ? HIS A 35 . ? 1_555 ? 34 AC3 15 ALA A 44 ? ALA A 44 . ? 1_555 ? 35 AC3 15 LYS A 45 ? LYS A 45 . ? 1_555 ? 36 AC3 15 CYS A 46 ? CYS A 46 . ? 1_555 ? 37 AC3 15 CYS A 51 ? CYS A 51 . ? 1_555 ? 38 AC3 15 HIS A 52 ? HIS A 52 . ? 1_555 ? 39 AC3 15 GLU A 61 ? GLU A 61 . ? 1_555 ? 40 AC3 15 GLU A 73 ? GLU A 73 . ? 11_555 ? 41 AC3 15 LEU A 74 ? LEU A 74 . ? 1_555 ? 42 AC3 15 LYS A 75 ? LYS A 75 . ? 1_555 ? 43 AC3 15 HIS A 76 ? HIS A 76 . ? 1_555 ? 44 AC3 15 HOH G . ? HOH A 2055 . ? 1_555 ? 45 AC3 15 HOH G . ? HOH A 2136 . ? 1_555 ? 46 AC3 15 HOH G . ? HOH A 2137 . ? 1_555 ? 47 AC4 18 LYS A 7 ? LYS A 7 . ? 6_665 ? 48 AC4 18 GLU A 10 ? GLU A 10 . ? 6_665 ? 49 AC4 18 PHE A 20 ? PHE A 20 . ? 1_555 ? 50 AC4 18 PRO A 24 ? PRO A 24 . ? 1_555 ? 51 AC4 18 HIS A 25 ? HIS A 25 . ? 1_555 ? 52 AC4 18 CYS A 79 ? CYS A 79 . ? 1_555 ? 53 AC4 18 CYS A 82 ? CYS A 82 . ? 1_555 ? 54 AC4 18 HIS A 83 ? HIS A 83 . ? 1_555 ? 55 AC4 18 GLU A 89 ? GLU A 89 . ? 5_454 ? 56 AC4 18 LYS A 90 ? LYS A 90 . ? 1_555 ? 57 AC4 18 LEU A 93 ? LEU A 93 . ? 1_555 ? 58 AC4 18 LEU A 97 ? LEU A 97 . ? 1_555 ? 59 AC4 18 LYS A 104 ? LYS A 104 . ? 1_555 ? 60 AC4 18 HEC B . ? HEC A 201 . ? 1_555 ? 61 AC4 18 HOH G . ? HOH A 2138 . ? 1_555 ? 62 AC4 18 HOH G . ? HOH A 2139 . ? 1_555 ? 63 AC4 18 HOH G . ? HOH A 2140 . ? 1_555 ? 64 AC4 18 HOH G . ? HOH A 2141 . ? 1_555 ? 65 AC5 21 VAL A 11 ? VAL A 11 . ? 1_555 ? 66 AC5 21 GLY A 13 ? GLY A 13 . ? 1_555 ? 67 AC5 21 SER A 14 ? SER A 14 . ? 1_555 ? 68 AC5 21 GLN A 15 ? GLN A 15 . ? 1_555 ? 69 AC5 21 LYS A 16 ? LYS A 16 . ? 1_555 ? 70 AC5 21 VAL A 18 ? VAL A 18 . ? 1_555 ? 71 AC5 21 ASP A 38 ? ASP A 38 . ? 7_455 ? 72 AC5 21 GLY A 39 ? GLY A 39 . ? 7_455 ? 73 AC5 21 LEU A 55 ? LEU A 55 . ? 1_555 ? 74 AC5 21 LEU A 64 ? LEU A 64 . ? 1_555 ? 75 AC5 21 TYR A 65 ? TYR A 65 . ? 1_555 ? 76 AC5 21 VAL A 68 ? VAL A 68 . ? 1_555 ? 77 AC5 21 HIS A 69 ? HIS A 69 . ? 1_555 ? 78 AC5 21 HIS A 83 ? HIS A 83 . ? 1_555 ? 79 AC5 21 LEU A 97 ? LEU A 97 . ? 1_555 ? 80 AC5 21 THR A 98 ? THR A 98 . ? 1_555 ? 81 AC5 21 GLY A 99 ? GLY A 99 . ? 1_555 ? 82 AC5 21 CYS A 100 ? CYS A 100 . ? 1_555 ? 83 AC5 21 CYS A 105 ? CYS A 105 . ? 1_555 ? 84 AC5 21 HIS A 106 ? HIS A 106 . ? 1_555 ? 85 AC5 21 HOH G . ? HOH A 2142 . ? 1_555 ? # _pdbx_entry_details.entry_id 1UP9 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NZ _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 59 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2083 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.03 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 51 ? ? -115.03 -117.18 2 1 GLU A 73 ? ? -67.85 39.91 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2002 ? G HOH . 2 1 A HOH 2031 ? G HOH . 3 1 A HOH 2052 ? G HOH . 4 1 A HOH 2110 ? G HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 CYS N N N N 57 CYS CA C N R 58 CYS C C N N 59 CYS O O N N 60 CYS CB C N N 61 CYS SG S N N 62 CYS OXT O N N 63 CYS H H N N 64 CYS H2 H N N 65 CYS HA H N N 66 CYS HB2 H N N 67 CYS HB3 H N N 68 CYS HG H N N 69 CYS HXT H N N 70 GLN N N N N 71 GLN CA C N S 72 GLN C C N N 73 GLN O O N N 74 GLN CB C N N 75 GLN CG C N N 76 GLN CD C N N 77 GLN OE1 O N N 78 GLN NE2 N N N 79 GLN OXT O N N 80 GLN H H N N 81 GLN H2 H N N 82 GLN HA H N N 83 GLN HB2 H N N 84 GLN HB3 H N N 85 GLN HG2 H N N 86 GLN HG3 H N N 87 GLN HE21 H N N 88 GLN HE22 H N N 89 GLN HXT H N N 90 GLU N N N N 91 GLU CA C N S 92 GLU C C N N 93 GLU O O N N 94 GLU CB C N N 95 GLU CG C N N 96 GLU CD C N N 97 GLU OE1 O N N 98 GLU OE2 O N N 99 GLU OXT O N N 100 GLU H H N N 101 GLU H2 H N N 102 GLU HA H N N 103 GLU HB2 H N N 104 GLU HB3 H N N 105 GLU HG2 H N N 106 GLU HG3 H N N 107 GLU HE2 H N N 108 GLU HXT H N N 109 GLY N N N N 110 GLY CA C N N 111 GLY C C N N 112 GLY O O N N 113 GLY OXT O N N 114 GLY H H N N 115 GLY H2 H N N 116 GLY HA2 H N N 117 GLY HA3 H N N 118 GLY HXT H N N 119 HEC FE FE N N 120 HEC CHA C N N 121 HEC CHB C N N 122 HEC CHC C N N 123 HEC CHD C N N 124 HEC NA N Y N 125 HEC C1A C Y N 126 HEC C2A C Y N 127 HEC C3A C Y N 128 HEC C4A C Y N 129 HEC CMA C N N 130 HEC CAA C N N 131 HEC CBA C N N 132 HEC CGA C N N 133 HEC O1A O N N 134 HEC O2A O N N 135 HEC NB N Y N 136 HEC C1B C Y N 137 HEC C2B C Y N 138 HEC C3B C Y N 139 HEC C4B C Y N 140 HEC CMB C N N 141 HEC CAB C N N 142 HEC CBB C N N 143 HEC NC N Y N 144 HEC C1C C Y N 145 HEC C2C C Y N 146 HEC C3C C Y N 147 HEC C4C C Y N 148 HEC CMC C N N 149 HEC CAC C N N 150 HEC CBC C N N 151 HEC ND N Y N 152 HEC C1D C Y N 153 HEC C2D C Y N 154 HEC C3D C Y N 155 HEC C4D C Y N 156 HEC CMD C N N 157 HEC CAD C N N 158 HEC CBD C N N 159 HEC CGD C N N 160 HEC O1D O N N 161 HEC O2D O N N 162 HEC HHA H N N 163 HEC HHB H N N 164 HEC HHC H N N 165 HEC HHD H N N 166 HEC HMA1 H N N 167 HEC HMA2 H N N 168 HEC HMA3 H N N 169 HEC HAA1 H N N 170 HEC HAA2 H N N 171 HEC HBA1 H N N 172 HEC HBA2 H N N 173 HEC H2A H N N 174 HEC HMB1 H N N 175 HEC HMB2 H N N 176 HEC HMB3 H N N 177 HEC HAB H N N 178 HEC HBB1 H N N 179 HEC HBB2 H N N 180 HEC HBB3 H N N 181 HEC HMC1 H N N 182 HEC HMC2 H N N 183 HEC HMC3 H N N 184 HEC HAC H N N 185 HEC HBC1 H N N 186 HEC HBC2 H N N 187 HEC HBC3 H N N 188 HEC HMD1 H N N 189 HEC HMD2 H N N 190 HEC HMD3 H N N 191 HEC HAD1 H N N 192 HEC HAD2 H N N 193 HEC HBD1 H N N 194 HEC HBD2 H N N 195 HEC H2D H N N 196 HIS N N N N 197 HIS CA C N S 198 HIS C C N N 199 HIS O O N N 200 HIS CB C N N 201 HIS CG C Y N 202 HIS ND1 N Y N 203 HIS CD2 C Y N 204 HIS CE1 C Y N 205 HIS NE2 N Y N 206 HIS OXT O N N 207 HIS H H N N 208 HIS H2 H N N 209 HIS HA H N N 210 HIS HB2 H N N 211 HIS HB3 H N N 212 HIS HD1 H N N 213 HIS HD2 H N N 214 HIS HE1 H N N 215 HIS HE2 H N N 216 HIS HXT H N N 217 HOH O O N N 218 HOH H1 H N N 219 HOH H2 H N N 220 LEU N N N N 221 LEU CA C N S 222 LEU C C N N 223 LEU O O N N 224 LEU CB C N N 225 LEU CG C N N 226 LEU CD1 C N N 227 LEU CD2 C N N 228 LEU OXT O N N 229 LEU H H N N 230 LEU H2 H N N 231 LEU HA H N N 232 LEU HB2 H N N 233 LEU HB3 H N N 234 LEU HG H N N 235 LEU HD11 H N N 236 LEU HD12 H N N 237 LEU HD13 H N N 238 LEU HD21 H N N 239 LEU HD22 H N N 240 LEU HD23 H N N 241 LEU HXT H N N 242 LYS N N N N 243 LYS CA C N S 244 LYS C C N N 245 LYS O O N N 246 LYS CB C N N 247 LYS CG C N N 248 LYS CD C N N 249 LYS CE C N N 250 LYS NZ N N N 251 LYS OXT O N N 252 LYS H H N N 253 LYS H2 H N N 254 LYS HA H N N 255 LYS HB2 H N N 256 LYS HB3 H N N 257 LYS HG2 H N N 258 LYS HG3 H N N 259 LYS HD2 H N N 260 LYS HD3 H N N 261 LYS HE2 H N N 262 LYS HE3 H N N 263 LYS HZ1 H N N 264 LYS HZ2 H N N 265 LYS HZ3 H N N 266 LYS HXT H N N 267 MET N N N N 268 MET CA C N S 269 MET C C N N 270 MET O O N N 271 MET CB C N N 272 MET CG C N N 273 MET SD S N N 274 MET CE C N N 275 MET OXT O N N 276 MET H H N N 277 MET H2 H N N 278 MET HA H N N 279 MET HB2 H N N 280 MET HB3 H N N 281 MET HG2 H N N 282 MET HG3 H N N 283 MET HE1 H N N 284 MET HE2 H N N 285 MET HE3 H N N 286 MET HXT H N N 287 PHE N N N N 288 PHE CA C N S 289 PHE C C N N 290 PHE O O N N 291 PHE CB C N N 292 PHE CG C Y N 293 PHE CD1 C Y N 294 PHE CD2 C Y N 295 PHE CE1 C Y N 296 PHE CE2 C Y N 297 PHE CZ C Y N 298 PHE OXT O N N 299 PHE H H N N 300 PHE H2 H N N 301 PHE HA H N N 302 PHE HB2 H N N 303 PHE HB3 H N N 304 PHE HD1 H N N 305 PHE HD2 H N N 306 PHE HE1 H N N 307 PHE HE2 H N N 308 PHE HZ H N N 309 PHE HXT H N N 310 PRO N N N N 311 PRO CA C N S 312 PRO C C N N 313 PRO O O N N 314 PRO CB C N N 315 PRO CG C N N 316 PRO CD C N N 317 PRO OXT O N N 318 PRO H H N N 319 PRO HA H N N 320 PRO HB2 H N N 321 PRO HB3 H N N 322 PRO HG2 H N N 323 PRO HG3 H N N 324 PRO HD2 H N N 325 PRO HD3 H N N 326 PRO HXT H N N 327 SER N N N N 328 SER CA C N S 329 SER C C N N 330 SER O O N N 331 SER CB C N N 332 SER OG O N N 333 SER OXT O N N 334 SER H H N N 335 SER H2 H N N 336 SER HA H N N 337 SER HB2 H N N 338 SER HB3 H N N 339 SER HG H N N 340 SER HXT H N N 341 SO4 S S N N 342 SO4 O1 O N N 343 SO4 O2 O N N 344 SO4 O3 O N N 345 SO4 O4 O N N 346 THR N N N N 347 THR CA C N S 348 THR C C N N 349 THR O O N N 350 THR CB C N R 351 THR OG1 O N N 352 THR CG2 C N N 353 THR OXT O N N 354 THR H H N N 355 THR H2 H N N 356 THR HA H N N 357 THR HB H N N 358 THR HG1 H N N 359 THR HG21 H N N 360 THR HG22 H N N 361 THR HG23 H N N 362 THR HXT H N N 363 TYR N N N N 364 TYR CA C N S 365 TYR C C N N 366 TYR O O N N 367 TYR CB C N N 368 TYR CG C Y N 369 TYR CD1 C Y N 370 TYR CD2 C Y N 371 TYR CE1 C Y N 372 TYR CE2 C Y N 373 TYR CZ C Y N 374 TYR OH O N N 375 TYR OXT O N N 376 TYR H H N N 377 TYR H2 H N N 378 TYR HA H N N 379 TYR HB2 H N N 380 TYR HB3 H N N 381 TYR HD1 H N N 382 TYR HD2 H N N 383 TYR HE1 H N N 384 TYR HE2 H N N 385 TYR HH H N N 386 TYR HXT H N N 387 VAL N N N N 388 VAL CA C N S 389 VAL C C N N 390 VAL O O N N 391 VAL CB C N N 392 VAL CG1 C N N 393 VAL CG2 C N N 394 VAL OXT O N N 395 VAL H H N N 396 VAL H2 H N N 397 VAL HA H N N 398 VAL HB H N N 399 VAL HG11 H N N 400 VAL HG12 H N N 401 VAL HG13 H N N 402 VAL HG21 H N N 403 VAL HG22 H N N 404 VAL HG23 H N N 405 VAL HXT H N N 406 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 CYS N CA sing N N 54 CYS N H sing N N 55 CYS N H2 sing N N 56 CYS CA C sing N N 57 CYS CA CB sing N N 58 CYS CA HA sing N N 59 CYS C O doub N N 60 CYS C OXT sing N N 61 CYS CB SG sing N N 62 CYS CB HB2 sing N N 63 CYS CB HB3 sing N N 64 CYS SG HG sing N N 65 CYS OXT HXT sing N N 66 GLN N CA sing N N 67 GLN N H sing N N 68 GLN N H2 sing N N 69 GLN CA C sing N N 70 GLN CA CB sing N N 71 GLN CA HA sing N N 72 GLN C O doub N N 73 GLN C OXT sing N N 74 GLN CB CG sing N N 75 GLN CB HB2 sing N N 76 GLN CB HB3 sing N N 77 GLN CG CD sing N N 78 GLN CG HG2 sing N N 79 GLN CG HG3 sing N N 80 GLN CD OE1 doub N N 81 GLN CD NE2 sing N N 82 GLN NE2 HE21 sing N N 83 GLN NE2 HE22 sing N N 84 GLN OXT HXT sing N N 85 GLU N CA sing N N 86 GLU N H sing N N 87 GLU N H2 sing N N 88 GLU CA C sing N N 89 GLU CA CB sing N N 90 GLU CA HA sing N N 91 GLU C O doub N N 92 GLU C OXT sing N N 93 GLU CB CG sing N N 94 GLU CB HB2 sing N N 95 GLU CB HB3 sing N N 96 GLU CG CD sing N N 97 GLU CG HG2 sing N N 98 GLU CG HG3 sing N N 99 GLU CD OE1 doub N N 100 GLU CD OE2 sing N N 101 GLU OE2 HE2 sing N N 102 GLU OXT HXT sing N N 103 GLY N CA sing N N 104 GLY N H sing N N 105 GLY N H2 sing N N 106 GLY CA C sing N N 107 GLY CA HA2 sing N N 108 GLY CA HA3 sing N N 109 GLY C O doub N N 110 GLY C OXT sing N N 111 GLY OXT HXT sing N N 112 HEC FE NA sing N N 113 HEC FE NB sing N N 114 HEC FE NC sing N N 115 HEC FE ND sing N N 116 HEC CHA C1A doub N N 117 HEC CHA C4D sing N N 118 HEC CHA HHA sing N N 119 HEC CHB C4A doub N N 120 HEC CHB C1B sing N N 121 HEC CHB HHB sing N N 122 HEC CHC C4B doub N N 123 HEC CHC C1C sing N N 124 HEC CHC HHC sing N N 125 HEC CHD C4C doub N N 126 HEC CHD C1D sing N N 127 HEC CHD HHD sing N N 128 HEC NA C1A sing Y N 129 HEC NA C4A sing Y N 130 HEC C1A C2A sing Y N 131 HEC C2A C3A doub Y N 132 HEC C2A CAA sing N N 133 HEC C3A C4A sing Y N 134 HEC C3A CMA sing N N 135 HEC CMA HMA1 sing N N 136 HEC CMA HMA2 sing N N 137 HEC CMA HMA3 sing N N 138 HEC CAA CBA sing N N 139 HEC CAA HAA1 sing N N 140 HEC CAA HAA2 sing N N 141 HEC CBA CGA sing N N 142 HEC CBA HBA1 sing N N 143 HEC CBA HBA2 sing N N 144 HEC CGA O1A doub N N 145 HEC CGA O2A sing N N 146 HEC O2A H2A sing N N 147 HEC NB C1B sing Y N 148 HEC NB C4B sing Y N 149 HEC C1B C2B doub Y N 150 HEC C2B C3B sing Y N 151 HEC C2B CMB sing N N 152 HEC C3B C4B sing Y N 153 HEC C3B CAB doub N E 154 HEC CMB HMB1 sing N N 155 HEC CMB HMB2 sing N N 156 HEC CMB HMB3 sing N N 157 HEC CAB CBB sing N N 158 HEC CAB HAB sing N N 159 HEC CBB HBB1 sing N N 160 HEC CBB HBB2 sing N N 161 HEC CBB HBB3 sing N N 162 HEC NC C1C sing Y N 163 HEC NC C4C sing Y N 164 HEC C1C C2C doub Y N 165 HEC C2C C3C sing Y N 166 HEC C2C CMC sing N N 167 HEC C3C C4C sing Y N 168 HEC C3C CAC doub N E 169 HEC CMC HMC1 sing N N 170 HEC CMC HMC2 sing N N 171 HEC CMC HMC3 sing N N 172 HEC CAC CBC sing N N 173 HEC CAC HAC sing N N 174 HEC CBC HBC1 sing N N 175 HEC CBC HBC2 sing N N 176 HEC CBC HBC3 sing N N 177 HEC ND C1D sing Y N 178 HEC ND C4D sing Y N 179 HEC C1D C2D doub Y N 180 HEC C2D C3D sing Y N 181 HEC C2D CMD sing N N 182 HEC C3D C4D doub Y N 183 HEC C3D CAD sing N N 184 HEC CMD HMD1 sing N N 185 HEC CMD HMD2 sing N N 186 HEC CMD HMD3 sing N N 187 HEC CAD CBD sing N N 188 HEC CAD HAD1 sing N N 189 HEC CAD HAD2 sing N N 190 HEC CBD CGD sing N N 191 HEC CBD HBD1 sing N N 192 HEC CBD HBD2 sing N N 193 HEC CGD O1D doub N N 194 HEC CGD O2D sing N N 195 HEC O2D H2D sing N N 196 HIS N CA sing N N 197 HIS N H sing N N 198 HIS N H2 sing N N 199 HIS CA C sing N N 200 HIS CA CB sing N N 201 HIS CA HA sing N N 202 HIS C O doub N N 203 HIS C OXT sing N N 204 HIS CB CG sing N N 205 HIS CB HB2 sing N N 206 HIS CB HB3 sing N N 207 HIS CG ND1 sing Y N 208 HIS CG CD2 doub Y N 209 HIS ND1 CE1 doub Y N 210 HIS ND1 HD1 sing N N 211 HIS CD2 NE2 sing Y N 212 HIS CD2 HD2 sing N N 213 HIS CE1 NE2 sing Y N 214 HIS CE1 HE1 sing N N 215 HIS NE2 HE2 sing N N 216 HIS OXT HXT sing N N 217 HOH O H1 sing N N 218 HOH O H2 sing N N 219 LEU N CA sing N N 220 LEU N H sing N N 221 LEU N H2 sing N N 222 LEU CA C sing N N 223 LEU CA CB sing N N 224 LEU CA HA sing N N 225 LEU C O doub N N 226 LEU C OXT sing N N 227 LEU CB CG sing N N 228 LEU CB HB2 sing N N 229 LEU CB HB3 sing N N 230 LEU CG CD1 sing N N 231 LEU CG CD2 sing N N 232 LEU CG HG sing N N 233 LEU CD1 HD11 sing N N 234 LEU CD1 HD12 sing N N 235 LEU CD1 HD13 sing N N 236 LEU CD2 HD21 sing N N 237 LEU CD2 HD22 sing N N 238 LEU CD2 HD23 sing N N 239 LEU OXT HXT sing N N 240 LYS N CA sing N N 241 LYS N H sing N N 242 LYS N H2 sing N N 243 LYS CA C sing N N 244 LYS CA CB sing N N 245 LYS CA HA sing N N 246 LYS C O doub N N 247 LYS C OXT sing N N 248 LYS CB CG sing N N 249 LYS CB HB2 sing N N 250 LYS CB HB3 sing N N 251 LYS CG CD sing N N 252 LYS CG HG2 sing N N 253 LYS CG HG3 sing N N 254 LYS CD CE sing N N 255 LYS CD HD2 sing N N 256 LYS CD HD3 sing N N 257 LYS CE NZ sing N N 258 LYS CE HE2 sing N N 259 LYS CE HE3 sing N N 260 LYS NZ HZ1 sing N N 261 LYS NZ HZ2 sing N N 262 LYS NZ HZ3 sing N N 263 LYS OXT HXT sing N N 264 MET N CA sing N N 265 MET N H sing N N 266 MET N H2 sing N N 267 MET CA C sing N N 268 MET CA CB sing N N 269 MET CA HA sing N N 270 MET C O doub N N 271 MET C OXT sing N N 272 MET CB CG sing N N 273 MET CB HB2 sing N N 274 MET CB HB3 sing N N 275 MET CG SD sing N N 276 MET CG HG2 sing N N 277 MET CG HG3 sing N N 278 MET SD CE sing N N 279 MET CE HE1 sing N N 280 MET CE HE2 sing N N 281 MET CE HE3 sing N N 282 MET OXT HXT sing N N 283 PHE N CA sing N N 284 PHE N H sing N N 285 PHE N H2 sing N N 286 PHE CA C sing N N 287 PHE CA CB sing N N 288 PHE CA HA sing N N 289 PHE C O doub N N 290 PHE C OXT sing N N 291 PHE CB CG sing N N 292 PHE CB HB2 sing N N 293 PHE CB HB3 sing N N 294 PHE CG CD1 doub Y N 295 PHE CG CD2 sing Y N 296 PHE CD1 CE1 sing Y N 297 PHE CD1 HD1 sing N N 298 PHE CD2 CE2 doub Y N 299 PHE CD2 HD2 sing N N 300 PHE CE1 CZ doub Y N 301 PHE CE1 HE1 sing N N 302 PHE CE2 CZ sing Y N 303 PHE CE2 HE2 sing N N 304 PHE CZ HZ sing N N 305 PHE OXT HXT sing N N 306 PRO N CA sing N N 307 PRO N CD sing N N 308 PRO N H sing N N 309 PRO CA C sing N N 310 PRO CA CB sing N N 311 PRO CA HA sing N N 312 PRO C O doub N N 313 PRO C OXT sing N N 314 PRO CB CG sing N N 315 PRO CB HB2 sing N N 316 PRO CB HB3 sing N N 317 PRO CG CD sing N N 318 PRO CG HG2 sing N N 319 PRO CG HG3 sing N N 320 PRO CD HD2 sing N N 321 PRO CD HD3 sing N N 322 PRO OXT HXT sing N N 323 SER N CA sing N N 324 SER N H sing N N 325 SER N H2 sing N N 326 SER CA C sing N N 327 SER CA CB sing N N 328 SER CA HA sing N N 329 SER C O doub N N 330 SER C OXT sing N N 331 SER CB OG sing N N 332 SER CB HB2 sing N N 333 SER CB HB3 sing N N 334 SER OG HG sing N N 335 SER OXT HXT sing N N 336 SO4 S O1 doub N N 337 SO4 S O2 doub N N 338 SO4 S O3 sing N N 339 SO4 S O4 sing N N 340 THR N CA sing N N 341 THR N H sing N N 342 THR N H2 sing N N 343 THR CA C sing N N 344 THR CA CB sing N N 345 THR CA HA sing N N 346 THR C O doub N N 347 THR C OXT sing N N 348 THR CB OG1 sing N N 349 THR CB CG2 sing N N 350 THR CB HB sing N N 351 THR OG1 HG1 sing N N 352 THR CG2 HG21 sing N N 353 THR CG2 HG22 sing N N 354 THR CG2 HG23 sing N N 355 THR OXT HXT sing N N 356 TYR N CA sing N N 357 TYR N H sing N N 358 TYR N H2 sing N N 359 TYR CA C sing N N 360 TYR CA CB sing N N 361 TYR CA HA sing N N 362 TYR C O doub N N 363 TYR C OXT sing N N 364 TYR CB CG sing N N 365 TYR CB HB2 sing N N 366 TYR CB HB3 sing N N 367 TYR CG CD1 doub Y N 368 TYR CG CD2 sing Y N 369 TYR CD1 CE1 sing Y N 370 TYR CD1 HD1 sing N N 371 TYR CD2 CE2 doub Y N 372 TYR CD2 HD2 sing N N 373 TYR CE1 CZ doub Y N 374 TYR CE1 HE1 sing N N 375 TYR CE2 CZ sing Y N 376 TYR CE2 HE2 sing N N 377 TYR CZ OH sing N N 378 TYR OH HH sing N N 379 TYR OXT HXT sing N N 380 VAL N CA sing N N 381 VAL N H sing N N 382 VAL N H2 sing N N 383 VAL CA C sing N N 384 VAL CA CB sing N N 385 VAL CA HA sing N N 386 VAL C O doub N N 387 VAL C OXT sing N N 388 VAL CB CG1 sing N N 389 VAL CB CG2 sing N N 390 VAL CB HB sing N N 391 VAL CG1 HG11 sing N N 392 VAL CG1 HG12 sing N N 393 VAL CG1 HG13 sing N N 394 VAL CG2 HG21 sing N N 395 VAL CG2 HG22 sing N N 396 VAL CG2 HG23 sing N N 397 VAL OXT HXT sing N N 398 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3CYR _pdbx_initial_refinement_model.details 'PDB ENTRY 3CYR' # _atom_sites.entry_id 1UP9 _atom_sites.fract_transf_matrix[1][1] 0.016297 _atom_sites.fract_transf_matrix[1][2] 0.009409 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018818 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009353 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_