HEADER GLYCOSYL HYDROLASE 10-OCT-03 1UPS TITLE GLCNAC[ALPHA]1-4GAL RELEASING ENDO-[BETA]-GALACTOSIDASE FROM TITLE 2 CLOSTRIDIUM PERFRINGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLCNAC-ALPHA-1,4-GAL-RELEASING ENDO-BETA-GALACTOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 ATCC: 10543; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDO-GALACTOSIDASE, CLOSTRIDIUM PERFRINGENS, GLYCOSYL HYDROLASE, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, SOUTHEAST COLLABORATORY FOR STRUCTURAL KEYWDS 3 GENOMICS, SECSG EXPDTA X-RAY DIFFRACTION AUTHOR W.TEMPEL,Z.-J.LIU,P.S.HORANYI,L.DENG,D.LEE,M.G.NEWTON,J.P.ROSE, AUTHOR 2 H.ASHIDA,S.-C.LI,Y.-T.LI,B.-C.WANG,SOUTHEAST COLLABORATORY FOR AUTHOR 3 STRUCTURAL GENOMICS (SECSG) REVDAT 8 16-OCT-24 1UPS 1 REMARK LINK REVDAT 7 21-AUG-19 1UPS 1 REMARK REVDAT 6 13-JUN-18 1UPS 1 JRNL REMARK REVDAT 5 24-FEB-09 1UPS 1 VERSN REVDAT 4 04-MAY-05 1UPS 1 JRNL REVDAT 3 03-FEB-05 1UPS 1 KEYWDS REVDAT 2 24-JAN-05 1UPS 1 KEYWDS AUTHOR REMARK REVDAT 1 25-NOV-04 1UPS 0 JRNL AUTH W.TEMPEL,Z.J.LIU,P.S.HORANYI,L.DENG,D.LEE,M.G.NEWTON, JRNL AUTH 2 J.P.ROSE,H.ASHIDA,S.C.LI,Y.T.LI,B.C.WANG JRNL TITL THREE-DIMENSIONAL STRUCTURE OF GLCNACALPHA1-4GAL RELEASING JRNL TITL 2 ENDO-BETA-GALACTOSIDASE FROM CLOSTRIDIUM PERFRINGENS. JRNL REF PROTEINS V. 59 141 2005 JRNL REFN ESSN 1097-0134 JRNL PMID 15688452 JRNL DOI 10.1002/PROT.20363 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 102318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5397 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7275 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 358 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6566 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 378 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.825 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6841 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9341 ; 1.219 ; 1.897 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 795 ; 6.958 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 918 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5477 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2777 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 340 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 10 ; 0.074 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.158 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.120 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3980 ; 0.602 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6431 ; 1.076 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2861 ; 1.682 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2910 ; 2.666 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1290013698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.40 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : SI CHANNEL 220 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107796 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.21800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 42% AMMONIUM SULFATE, 2% PEG400, 0.1M REMARK 280 HEPES-NA AT PH 7.4, PH 7.40 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.07000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.07000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.07000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 VAL A 3 REMARK 465 PHE A 4 REMARK 465 MET A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 LEU A 10 REMARK 465 PRO A 11 REMARK 465 PHE A 12 REMARK 465 THR A 13 REMARK 465 ILE A 14 REMARK 465 SER A 15 REMARK 465 LYS A 16 REMARK 465 GLU A 287 REMARK 465 SER A 288 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 VAL B 3 REMARK 465 PHE B 4 REMARK 465 MET B 5 REMARK 465 LEU B 6 REMARK 465 LEU B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 LEU B 10 REMARK 465 PRO B 11 REMARK 465 PHE B 12 REMARK 465 THR B 13 REMARK 465 ILE B 14 REMARK 465 SER B 15 REMARK 465 LYS B 16 REMARK 465 ALA B 17 REMARK 465 LYS B 18 REMARK 465 GLU B 285 REMARK 465 SER B 286 REMARK 465 GLU B 287 REMARK 465 SER B 288 REMARK 465 LEU B 289 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 GLU A 88 CD OE1 OE2 REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 LYS A 164 CD CE NZ REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 LYS A 284 CD CE NZ REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 ILE A 317 CD1 REMARK 470 LYS A 320 CD CE NZ REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 339 NZ REMARK 470 LYS A 363 CD CE NZ REMARK 470 ARG A 380 CZ NH1 NH2 REMARK 470 ILE B 25 CD1 REMARK 470 GLU B 26 CG CD OE1 OE2 REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 GLU B 117 CG CD OE1 OE2 REMARK 470 LYS B 204 CD CE NZ REMARK 470 ASP B 281 CG OD1 OD2 REMARK 470 ASN B 290 CG OD1 ND2 REMARK 470 GLU B 307 CB CG CD OE1 OE2 REMARK 470 ILE B 317 CD1 REMARK 470 LYS B 323 CG CD CE NZ REMARK 470 ARG B 332 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 363 CG CD CE NZ REMARK 470 GLU B 420 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 86 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 102 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 156 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 203 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 310 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 102 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 156 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 159 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 203 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 272 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 310 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 53 55.50 32.97 REMARK 500 CYS A 86 71.60 -161.98 REMARK 500 TRP A 105 -1.26 70.84 REMARK 500 HIS A 107 68.74 60.24 REMARK 500 TYR A 128 155.85 74.19 REMARK 500 GLN A 165 60.93 -112.24 REMARK 500 GLU A 173 23.32 -142.70 REMARK 500 TRP A 189 -113.29 55.23 REMARK 500 ALA A 256 -159.99 -113.24 REMARK 500 ASP B 50 40.86 -106.30 REMARK 500 LEU B 53 59.60 29.44 REMARK 500 CYS B 86 71.13 -160.22 REMARK 500 TRP B 105 -2.58 70.36 REMARK 500 HIS B 107 71.71 57.18 REMARK 500 TYR B 128 157.45 75.48 REMARK 500 GLN B 165 60.31 -112.38 REMARK 500 TRP B 189 -112.64 55.09 REMARK 500 ALA B 256 -158.47 -112.26 REMARK 500 PRO B 387 0.11 -68.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 37 O REMARK 620 2 ASN A 39 OD1 66.1 REMARK 620 3 GLY A 72 O 95.6 82.0 REMARK 620 4 ASP A 272 OD2 148.9 144.9 89.8 REMARK 620 5 ASP A 272 O 73.6 138.1 90.9 75.7 REMARK 620 6 HOH A2015 O 94.3 100.2 169.9 82.8 93.8 REMARK 620 7 HOH A2126 O 140.8 76.4 90.2 69.5 145.2 80.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 37 O REMARK 620 2 ASN B 39 OD1 67.1 REMARK 620 3 GLY B 72 O 93.0 82.3 REMARK 620 4 ASP B 272 O 72.8 138.9 91.1 REMARK 620 5 ASP B 272 OD2 147.7 144.9 89.1 74.9 REMARK 620 6 HOH B2012 O 92.7 98.4 174.1 92.2 86.9 REMARK 620 7 HOH B2130 O 138.7 72.5 89.7 148.4 73.5 84.9 REMARK 620 N 1 2 3 4 5 6 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CPE-EBGAL RELATED DB: TARGETDB DBREF 1UPS A 1 420 UNP Q934G8 Q934G8 1 420 DBREF 1UPS B 1 420 UNP Q934G8 Q934G8 1 420 SEQRES 1 A 420 MET PHE VAL PHE MET LEU LEU LEU LEU LEU PRO PHE THR SEQRES 2 A 420 ILE SER LYS ALA LYS ASP PHE PRO ALA ASN PRO ILE GLU SEQRES 3 A 420 LYS ALA GLY TYR LYS LEU ASP PHE SER ASP GLU PHE ASN SEQRES 4 A 420 GLY PRO THR LEU ASP ARG GLU LYS TRP THR ASP TYR TYR SEQRES 5 A 420 LEU PRO HIS TRP CYS LYS ASP PRO GLU SER ALA LYS ALA SEQRES 6 A 420 ASN TYR ARG PHE GLU ASN GLY SER LEU VAL GLU TYR ILE SEQRES 7 A 420 THR GLU ASP GLN LYS PRO TRP CYS PRO GLU HIS ASP GLY SEQRES 8 A 420 THR VAL ARG SER SER ALA ILE MET SER PHE ASP LYS SER SEQRES 9 A 420 TRP ILE HIS ASN PHE SER GLY THR THR ASP ASN HIS GLU SEQRES 10 A 420 ARG ASN GLU TRP ARG GLY TYR THR THR LYS TYR GLY TYR SEQRES 11 A 420 PHE GLU ILE ARG ALA LYS LEU SER ASN THR GLY GLY GLY SEQRES 12 A 420 GLY HIS GLN ALA TRP TRP MET VAL GLY MET GLN ASP ASP SEQRES 13 A 420 THR ASN ASP TRP PHE ASN SER LYS GLN THR GLY GLU ILE SEQRES 14 A 420 ASP ILE LEU GLU THR PHE PHE SER LYS LYS ASP THR TRP SEQRES 15 A 420 ARG ILE ALA ALA TYR GLY TRP ASN ASP PRO ASN PHE GLN SEQRES 16 A 420 THR SER TRP THR ILE SER GLU ASP LYS VAL PRO SER GLY SEQRES 17 A 420 ASP PRO THR SER GLU TYR HIS ILE TYR ALA MET GLU TRP SEQRES 18 A 420 THR PRO THR ALA LEU LYS PHE TYR TYR ASP ASN GLU LEU SEQRES 19 A 420 PHE LYS VAL ILE TYR GLY SER PRO ASP TYR GLU MET GLY SEQRES 20 A 420 THR ILE LEU ASN ILE TYR THR ASP ALA GLY SER GLY ALA SEQRES 21 A 420 HIS ASN ASP VAL TRP PRO LYS GLU TRP ALA ILE ASP TYR SEQRES 22 A 420 MET ARG VAL TRP LYS PRO VAL ASP GLY TYR LYS GLU SER SEQRES 23 A 420 GLU SER LEU ASN ASN TYR LEU ILE ARG ASN ARG GLN THR SEQRES 24 A 420 GLY LYS PHE LEU TYR ILE GLU GLU ASN ASN ASP LYS VAL SEQRES 25 A 420 SER TYR GLY ASP ILE THR LEU LYS ASN GLU LYS ASN ALA SEQRES 26 A 420 LYS TRP SER LYS GLU TYR ARG ASP GLY TYR THR LEU LEU SEQRES 27 A 420 LYS ASN ASN GLU THR GLY GLU TYR LEU ASN ILE GLU ASN SEQRES 28 A 420 GLN THR GLY TYR ILE GLU HIS GLY LYS VAL PRO LYS THR SEQRES 29 A 420 TRP TRP SER ALA GLN TRP SER GLU VAL PRO VAL ASP GLY SEQRES 30 A 420 TYR THR ARG PHE VAL ASN ARG TRP LYS PRO ASN MET SER SEQRES 31 A 420 ILE HIS THR GLU SER TYR GLU GLY VAL LEU GLN TYR GLY SEQRES 32 A 420 ASN VAL PRO ASN THR TYR TRP THR SER GLN TRP GLN LEU SEQRES 33 A 420 ILE PRO VAL GLU SEQRES 1 B 420 MET PHE VAL PHE MET LEU LEU LEU LEU LEU PRO PHE THR SEQRES 2 B 420 ILE SER LYS ALA LYS ASP PHE PRO ALA ASN PRO ILE GLU SEQRES 3 B 420 LYS ALA GLY TYR LYS LEU ASP PHE SER ASP GLU PHE ASN SEQRES 4 B 420 GLY PRO THR LEU ASP ARG GLU LYS TRP THR ASP TYR TYR SEQRES 5 B 420 LEU PRO HIS TRP CYS LYS ASP PRO GLU SER ALA LYS ALA SEQRES 6 B 420 ASN TYR ARG PHE GLU ASN GLY SER LEU VAL GLU TYR ILE SEQRES 7 B 420 THR GLU ASP GLN LYS PRO TRP CYS PRO GLU HIS ASP GLY SEQRES 8 B 420 THR VAL ARG SER SER ALA ILE MET SER PHE ASP LYS SER SEQRES 9 B 420 TRP ILE HIS ASN PHE SER GLY THR THR ASP ASN HIS GLU SEQRES 10 B 420 ARG ASN GLU TRP ARG GLY TYR THR THR LYS TYR GLY TYR SEQRES 11 B 420 PHE GLU ILE ARG ALA LYS LEU SER ASN THR GLY GLY GLY SEQRES 12 B 420 GLY HIS GLN ALA TRP TRP MET VAL GLY MET GLN ASP ASP SEQRES 13 B 420 THR ASN ASP TRP PHE ASN SER LYS GLN THR GLY GLU ILE SEQRES 14 B 420 ASP ILE LEU GLU THR PHE PHE SER LYS LYS ASP THR TRP SEQRES 15 B 420 ARG ILE ALA ALA TYR GLY TRP ASN ASP PRO ASN PHE GLN SEQRES 16 B 420 THR SER TRP THR ILE SER GLU ASP LYS VAL PRO SER GLY SEQRES 17 B 420 ASP PRO THR SER GLU TYR HIS ILE TYR ALA MET GLU TRP SEQRES 18 B 420 THR PRO THR ALA LEU LYS PHE TYR TYR ASP ASN GLU LEU SEQRES 19 B 420 PHE LYS VAL ILE TYR GLY SER PRO ASP TYR GLU MET GLY SEQRES 20 B 420 THR ILE LEU ASN ILE TYR THR ASP ALA GLY SER GLY ALA SEQRES 21 B 420 HIS ASN ASP VAL TRP PRO LYS GLU TRP ALA ILE ASP TYR SEQRES 22 B 420 MET ARG VAL TRP LYS PRO VAL ASP GLY TYR LYS GLU SER SEQRES 23 B 420 GLU SER LEU ASN ASN TYR LEU ILE ARG ASN ARG GLN THR SEQRES 24 B 420 GLY LYS PHE LEU TYR ILE GLU GLU ASN ASN ASP LYS VAL SEQRES 25 B 420 SER TYR GLY ASP ILE THR LEU LYS ASN GLU LYS ASN ALA SEQRES 26 B 420 LYS TRP SER LYS GLU TYR ARG ASP GLY TYR THR LEU LEU SEQRES 27 B 420 LYS ASN ASN GLU THR GLY GLU TYR LEU ASN ILE GLU ASN SEQRES 28 B 420 GLN THR GLY TYR ILE GLU HIS GLY LYS VAL PRO LYS THR SEQRES 29 B 420 TRP TRP SER ALA GLN TRP SER GLU VAL PRO VAL ASP GLY SEQRES 30 B 420 TYR THR ARG PHE VAL ASN ARG TRP LYS PRO ASN MET SER SEQRES 31 B 420 ILE HIS THR GLU SER TYR GLU GLY VAL LEU GLN TYR GLY SEQRES 32 B 420 ASN VAL PRO ASN THR TYR TRP THR SER GLN TRP GLN LEU SEQRES 33 B 420 ILE PRO VAL GLU HET CA A 501 1 HET CA B 501 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *378(H2 O) HELIX 1 1 LEU A 53 CYS A 57 5 5 HELIX 2 2 ASP A 59 ALA A 63 5 5 HELIX 3 3 CYS A 86 GLY A 91 1 6 HELIX 4 4 GLU A 322 ALA A 325 5 4 HELIX 5 5 TRP A 365 ALA A 368 5 4 HELIX 6 6 TYR A 409 SER A 412 5 4 HELIX 7 7 LEU B 53 CYS B 57 5 5 HELIX 8 8 ASP B 59 ALA B 63 5 5 HELIX 9 9 CYS B 86 GLY B 91 1 6 HELIX 10 10 GLU B 322 ALA B 325 5 4 HELIX 11 11 TRP B 365 ALA B 368 5 4 HELIX 12 12 TYR B 409 SER B 412 5 4 SHEET 1 AA 4 TYR A 30 ASP A 36 0 SHEET 2 AA 4 LYS A 267 PRO A 279 -1 O MET A 274 N ASP A 36 SHEET 3 AA 4 SER A 73 ILE A 78 -1 O LEU A 74 N ILE A 271 SHEET 4 AA 4 ASN A 66 GLU A 70 -1 O ASN A 66 N TYR A 77 SHEET 1 AB 6 TYR A 30 ASP A 36 0 SHEET 2 AB 6 LYS A 267 PRO A 279 -1 O MET A 274 N ASP A 36 SHEET 3 AB 6 GLY A 129 LYS A 136 -1 O TYR A 130 N TRP A 277 SHEET 4 AB 6 HIS A 215 TRP A 221 -1 O HIS A 215 N ALA A 135 SHEET 5 AB 6 ALA A 225 TYR A 230 -1 O LYS A 227 N GLU A 220 SHEET 6 AB 6 GLU A 233 TYR A 239 -1 O GLU A 233 N TYR A 230 SHEET 1 AC 6 ARG A 94 MET A 99 0 SHEET 2 AC 6 MET A 246 THR A 254 -1 O LEU A 250 N ILE A 98 SHEET 3 AC 6 HIS A 145 GLY A 152 -1 O HIS A 145 N TYR A 253 SHEET 4 AC 6 GLU A 168 LEU A 172 -1 O ILE A 169 N MET A 150 SHEET 5 AC 6 THR A 181 TYR A 187 -1 O ALA A 185 N ASP A 170 SHEET 6 AC 6 THR A 199 LYS A 204 -1 O THR A 199 N ALA A 186 SHEET 1 AD 2 PHE A 101 ASP A 102 0 SHEET 2 AD 2 TRP A 121 ARG A 122 -1 O TRP A 121 N ASP A 102 SHEET 1 AE 2 ASN A 291 ASN A 296 0 SHEET 2 AE 2 TRP A 414 VAL A 419 -1 O GLN A 415 N ARG A 295 SHEET 1 AF 2 PHE A 302 TYR A 304 0 SHEET 2 AF 2 SER A 313 GLY A 315 -1 O SER A 313 N TYR A 304 SHEET 1 AG 2 TRP A 327 ARG A 332 0 SHEET 2 AG 2 TYR A 335 ASN A 340 -1 O TYR A 335 N ARG A 332 SHEET 1 AH 2 TYR A 346 ASN A 348 0 SHEET 2 AH 2 GLU A 357 GLY A 359 -1 O GLU A 357 N ASN A 348 SHEET 1 AI 2 TRP A 370 VAL A 375 0 SHEET 2 AI 2 TYR A 378 ASN A 383 -1 O TYR A 378 N VAL A 375 SHEET 1 AJ 2 SER A 390 HIS A 392 0 SHEET 2 AJ 2 GLN A 401 GLY A 403 -1 O GLN A 401 N HIS A 392 SHEET 1 BA 4 TYR B 30 ASP B 36 0 SHEET 2 BA 4 LYS B 267 PRO B 279 -1 O MET B 274 N ASP B 36 SHEET 3 BA 4 SER B 73 ILE B 78 -1 O LEU B 74 N ILE B 271 SHEET 4 BA 4 TYR B 67 GLU B 70 -1 O ARG B 68 N VAL B 75 SHEET 1 BB 6 TYR B 30 ASP B 36 0 SHEET 2 BB 6 LYS B 267 PRO B 279 -1 O MET B 274 N ASP B 36 SHEET 3 BB 6 GLY B 129 LYS B 136 -1 O TYR B 130 N TRP B 277 SHEET 4 BB 6 HIS B 215 TRP B 221 -1 O HIS B 215 N ALA B 135 SHEET 5 BB 6 ALA B 225 TYR B 230 -1 O LYS B 227 N GLU B 220 SHEET 6 BB 6 GLU B 233 TYR B 239 -1 O GLU B 233 N TYR B 230 SHEET 1 BC 6 ARG B 94 MET B 99 0 SHEET 2 BC 6 MET B 246 THR B 254 -1 O LEU B 250 N ILE B 98 SHEET 3 BC 6 HIS B 145 GLY B 152 -1 O HIS B 145 N TYR B 253 SHEET 4 BC 6 GLU B 168 LEU B 172 -1 O ILE B 169 N MET B 150 SHEET 5 BC 6 THR B 181 TYR B 187 -1 O ALA B 185 N ASP B 170 SHEET 6 BC 6 THR B 199 LYS B 204 -1 O THR B 199 N ALA B 186 SHEET 1 BD 2 PHE B 101 ASP B 102 0 SHEET 2 BD 2 TRP B 121 ARG B 122 -1 O TRP B 121 N ASP B 102 SHEET 1 BE 2 TYR B 292 ASN B 296 0 SHEET 2 BE 2 TRP B 414 PRO B 418 -1 O GLN B 415 N ARG B 295 SHEET 1 BF 2 PHE B 302 TYR B 304 0 SHEET 2 BF 2 SER B 313 GLY B 315 -1 O SER B 313 N TYR B 304 SHEET 1 BG 2 TRP B 327 ARG B 332 0 SHEET 2 BG 2 TYR B 335 ASN B 340 -1 O TYR B 335 N ARG B 332 SHEET 1 BH 2 TYR B 346 ASN B 348 0 SHEET 2 BH 2 GLU B 357 GLY B 359 -1 O GLU B 357 N ASN B 348 SHEET 1 BI 2 TRP B 370 VAL B 375 0 SHEET 2 BI 2 TYR B 378 ASN B 383 -1 O TYR B 378 N VAL B 375 SHEET 1 BJ 2 SER B 390 HIS B 392 0 SHEET 2 BJ 2 GLN B 401 GLY B 403 -1 O GLN B 401 N HIS B 392 SSBOND 1 CYS A 57 CYS A 86 1555 1555 2.05 SSBOND 2 CYS B 57 CYS B 86 1555 1555 2.07 LINK O GLU A 37 CA CA A 501 1555 1555 2.33 LINK OD1AASN A 39 CA CA A 501 1555 1555 2.93 LINK O GLY A 72 CA CA A 501 1555 1555 2.37 LINK OD2 ASP A 272 CA CA A 501 1555 1555 2.38 LINK O ASP A 272 CA CA A 501 1555 1555 2.38 LINK CA CA A 501 O HOH A2015 1555 1555 2.38 LINK CA CA A 501 O HOH A2126 1555 1555 2.48 LINK O GLU B 37 CA CA B 501 1555 1555 2.35 LINK OD1 ASN B 39 CA CA B 501 1555 1555 2.69 LINK O GLY B 72 CA CA B 501 1555 1555 2.32 LINK O ASP B 272 CA CA B 501 1555 1555 2.39 LINK OD2 ASP B 272 CA CA B 501 1555 1555 2.30 LINK CA CA B 501 O HOH B2012 1555 1555 2.33 LINK CA CA B 501 O HOH B2130 1555 1555 2.43 CISPEP 1 GLY A 40 PRO A 41 0 9.32 CISPEP 2 TRP A 265 PRO A 266 0 -7.14 CISPEP 3 GLY B 40 PRO B 41 0 5.61 CISPEP 4 TRP B 265 PRO B 266 0 -5.87 SITE 1 AC1 6 GLU A 37 ASN A 39 GLY A 72 ASP A 272 SITE 2 AC1 6 HOH A2015 HOH A2126 SITE 1 AC2 6 GLU B 37 ASN B 39 GLY B 72 ASP B 272 SITE 2 AC2 6 HOH B2012 HOH B2130 CRYST1 160.430 160.430 86.140 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006233 0.003599 0.000000 0.00000 SCALE2 0.000000 0.007197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011609 0.00000 MTRIX1 1 0.949280 -0.298600 -0.098500 35.42371 1 MTRIX2 1 -0.308650 -0.944710 -0.110750 324.40588 1 MTRIX3 1 -0.059980 0.135540 -0.988960 39.44626 1