HEADER TRANSFERASE 20-NOV-03 1USB TITLE RATIONAL DESIGN OF A NOVEL ENZYME - EFFICIENT THIOESTER HYDROLYSIS TITLE 2 ENABLED BY THE INCORPORATION OF A SINGLE HIS RESIDUE INTO HUMAN TITLE 3 GLUTATHIONE TRANSFERASE A1-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE A1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUTATHIONE TRANSFERASE A1-1, TH1, HA SUBUNIT 1 GST-EPSILON, COMPND 5 GSTA1-1, GST CLASS-ALPHA, GSTA1; COMPND 6 EC: 2.5.1.18; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-21A(+) KEYWDS TRANSFERASE, GLUTATHIONE EXPDTA X-RAY DIFFRACTION AUTHOR E.JAKOBSSON,G.J.KLEYWEGT REVDAT 5 13-DEC-23 1USB 1 REMARK LINK REVDAT 4 09-OCT-19 1USB 1 REMARK REVDAT 3 17-JAN-18 1USB 1 REMARK REVDAT 2 24-FEB-09 1USB 1 VERSN REVDAT 1 01-SEP-04 1USB 0 JRNL AUTH S.HEDEROS,K.S.BROO,E.JAKOBSSON,G.J.KLEYWEGT,B.MANNERVIK, JRNL AUTH 2 L.BALTZER JRNL TITL INCORPORATION OF A SINGLE HIS RESIDUE BY RATIONAL DESIGN JRNL TITL 2 ENABLES THIOL-ESTER HYDROLYSIS BY HUMAN GLUTATHIONE JRNL TITL 3 TRANSFERASE A1-1 JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 13163 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15333749 JRNL DOI 10.1073/PNAS.0403045101 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1411 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1939 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 259 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : 0.58000 REMARK 3 B33 (A**2) : -0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.53000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.219 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.311 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3685 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3475 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4953 ; 1.603 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8146 ; 1.026 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 440 ; 5.488 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.165 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3956 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 702 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 797 ; 0.244 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3910 ; 0.243 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2156 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 222 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.229 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 30 ; 0.196 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.201 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2201 ; 0.967 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3555 ; 1.728 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1484 ; 2.479 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1396 ; 4.007 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE LAST REFINEMENT ROUND WAS DONE REMARK 3 AGAINST ALL DATA, RFREE VALUES ARE THE LAST RECORDED. THE REMARK 3 OCCUPANCY HAS BEEN SET TO 0 WHERE THERE IS NO DENSITY FOR THE REMARK 3 SIDE CHAIN. REMARK 4 REMARK 4 1USB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1290013979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.007 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28011 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 67.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.020 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.6541 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.17 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1GSD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRISHCL PH 7.8, 26 % PEG4000, 2 REMARK 280 MM DITHIOTHREITOL, PH 7.80, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.45300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.02500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.45300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.02500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2101 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2141 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUTATION IN CHAIN A, ALA 215 TO HIS REMARK 400 REMARK 400 CATALYTIC ACTIVITY: RX + GLUTATHIONE = HX + R-S-GLUTATHIONE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 THR A 0 REMARK 465 ALA A 1 REMARK 465 PHE A 222 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 THR B 0 REMARK 465 ALA B 1 REMARK 465 ARG B 221 REMARK 465 PHE B 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 221 CA C O CB CG CD NE REMARK 470 ARG A 221 CZ NH1 NH2 REMARK 470 PHE B 220 CA C O CB CG CD1 CD2 REMARK 470 PHE B 220 CE1 CE2 CZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 111 CB CG1 CG2 REMARK 480 LYS A 117 CD CE NZ REMARK 480 ASP A 118 CG OD1 OD2 REMARK 480 LYS A 120 CD CE NZ REMARK 480 LYS A 196 CE NZ REMARK 480 GLU A 210 CB CG CD OE1 OE2 REMARK 480 LYS A 211 CB CG CD CE NZ REMARK 480 SER A 212 OG REMARK 480 LEU A 213 CD1 CD2 REMARK 480 GLU A 214 CB CG CD OE1 OE2 REMARK 480 GLU A 215 CD OE1 OE2 REMARK 480 LYS A 218 CB CG CD CE NZ REMARK 480 GLU B 39 CD OE1 OE2 REMARK 480 LYS B 129 CD CE NZ REMARK 480 GLU B 210 CG CD OE1 OE2 REMARK 480 LYS B 211 CB CG CD CE NZ REMARK 480 LEU B 213 CD1 CD2 REMARK 480 GLU B 214 OE1 OE2 REMARK 480 LYS B 218 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 42 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 101 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 187 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP B 85 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 187 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 187 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ASP B 209 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 13 -72.31 -63.37 REMARK 500 GLN A 67 111.75 83.39 REMARK 500 LEU A 108 51.34 -102.84 REMARK 500 ASP A 171 117.23 -171.08 REMARK 500 PHE A 220 -85.58 -112.30 REMARK 500 GLU B 3 98.59 -160.40 REMARK 500 ARG B 13 -72.04 -60.28 REMARK 500 GLN B 67 112.53 73.67 REMARK 500 PRO B 110 1.42 -67.38 REMARK 500 ARG B 131 -63.03 -123.89 REMARK 500 ASP B 171 107.51 -166.58 REMARK 500 GLU B 210 7.55 -59.51 REMARK 500 LYS B 211 -85.47 -81.15 REMARK 500 SER B 212 -13.71 -47.45 REMARK 500 LEU B 213 -70.63 -85.25 REMARK 500 GLU B 214 7.41 -64.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A3001 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 148 N REMARK 620 2 VAL A 149 O 93.6 REMARK 620 3 VAL A 149 N 49.9 56.6 REMARK 620 4 LYS A 152 O 114.2 62.9 113.5 REMARK 620 5 SER A 154 OG 136.7 118.9 125.0 106.2 REMARK 620 6 SER A 154 N 134.9 116.3 172.9 60.6 56.5 REMARK 620 7 ASP A 157 OD2 75.8 143.2 125.7 89.0 90.3 59.9 REMARK 620 8 ASP A 157 OD1 45.2 136.2 92.7 114.5 104.0 93.5 34.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B3001 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 148 N REMARK 620 2 VAL B 149 O 93.6 REMARK 620 3 VAL B 149 N 50.0 57.5 REMARK 620 4 LYS B 152 O 113.2 64.6 115.6 REMARK 620 5 SER B 154 N 135.3 118.7 174.7 63.1 REMARK 620 6 SER B 154 OG 132.0 121.6 121.2 111.2 56.7 REMARK 620 7 ASP B 157 OD1 45.9 136.7 93.3 112.0 91.9 100.3 REMARK 620 8 ASP B 157 OD2 79.5 146.6 129.0 88.0 56.3 84.8 36.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH B1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GSD RELATED DB: PDB REMARK 900 GLUTATHIONE TRANSFERASE A1-1 IN UNLIGANDED FORM REMARK 900 RELATED ID: 1GSE RELATED DB: PDB REMARK 900 GLUTATHIONE TRANSFERASE A1-1 COMPLEXED WITH AN ETHACRYNIC ACID REMARK 900 GLUTATHIONE CONJUGATE ( MUTANT R15K) REMARK 900 RELATED ID: 1GSF RELATED DB: PDB REMARK 900 GLUTATHIONE TRANSFERASE A1-1 COMPLEXED WITH ETHACRYNIC ACID REMARK 900 RELATED ID: 1GUH RELATED DB: PDB REMARK 900 GLUTATHIONE S-TRANSFERASE A1-1 REMARK 900 RELATED ID: 1K3L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF S-HEXYL- GLUTATHIONE COMPLEXOF REMARK 900 GLUTATHIONE TRANSFERASE AT 1.5 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 1K3O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF APO GLUTATHIONE S-TRANSFERASE REMARK 900 RELATED ID: 1K3Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF HUMAN GLUTATHIONE S-TRANSFERASE WITH REMARK 900 S-HEXYL GLUTATIONE AND GLYCEROL AT 1.3ANGSTROM REMARK 900 RELATED ID: 1LBK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A RECOMBINANT GLUTATHIONE TRANSFERASE,CREATED REMARK 900 BY REPLACING THE LAST SEVEN RESIDUES OF EACHSUBUNIT OF THE HUMAN REMARK 900 CLASS PI ISOENZYME WITH THEADDITIONAL C- TERMINAL HELIX OF HUMAN REMARK 900 CLASS ALPHA ISOENZYME DBREF 1USB A -2 1 PDB 1USB 1USB -2 1 DBREF 1USB A 2 222 UNP P08263 GTA1_HUMAN 1 221 DBREF 1USB B -2 1 PDB 1USB 1USB -2 1 DBREF 1USB B 2 222 UNP P08263 GTA1_HUMAN 1 221 SEQADV 1USB HIS A 216 UNP P08263 ALA 215 ENGINEERED MUTATION SEQADV 1USB HIS B 216 UNP P08263 ALA 215 ENGINEERED MUTATION SEQRES 1 A 225 GLY SER THR ALA ALA GLU LYS PRO LYS LEU HIS TYR PHE SEQRES 2 A 225 ASN ALA ARG GLY ARG MET GLU SER THR ARG TRP LEU LEU SEQRES 3 A 225 ALA ALA ALA GLY VAL GLU PHE GLU GLU LYS PHE ILE LYS SEQRES 4 A 225 SER ALA GLU ASP LEU ASP LYS LEU ARG ASN ASP GLY TYR SEQRES 5 A 225 LEU MET PHE GLN GLN VAL PRO MET VAL GLU ILE ASP GLY SEQRES 6 A 225 MET LYS LEU VAL GLN THR ARG ALA ILE LEU ASN TYR ILE SEQRES 7 A 225 ALA SER LYS TYR ASN LEU TYR GLY LYS ASP ILE LYS GLU SEQRES 8 A 225 ARG ALA LEU ILE ASP MET TYR ILE GLU GLY ILE ALA ASP SEQRES 9 A 225 LEU GLY GLU MET ILE LEU LEU LEU PRO VAL CYS PRO PRO SEQRES 10 A 225 GLU GLU LYS ASP ALA LYS LEU ALA LEU ILE LYS GLU LYS SEQRES 11 A 225 ILE LYS ASN ARG TYR PHE PRO ALA PHE GLU LYS VAL LEU SEQRES 12 A 225 LYS SER HIS GLY GLN ASP TYR LEU VAL GLY ASN LYS LEU SEQRES 13 A 225 SER ARG ALA ASP ILE HIS LEU VAL GLU LEU LEU TYR TYR SEQRES 14 A 225 VAL GLU GLU LEU ASP SER SER LEU ILE SER SER PHE PRO SEQRES 15 A 225 LEU LEU LYS ALA LEU LYS THR ARG ILE SER ASN LEU PRO SEQRES 16 A 225 THR VAL LYS LYS PHE LEU GLN PRO GLY SER PRO ARG LYS SEQRES 17 A 225 PRO PRO MET ASP GLU LYS SER LEU GLU GLU HIS ARG LYS SEQRES 18 A 225 ILE PHE ARG PHE SEQRES 1 B 225 GLY SER THR ALA ALA GLU LYS PRO LYS LEU HIS TYR PHE SEQRES 2 B 225 ASN ALA ARG GLY ARG MET GLU SER THR ARG TRP LEU LEU SEQRES 3 B 225 ALA ALA ALA GLY VAL GLU PHE GLU GLU LYS PHE ILE LYS SEQRES 4 B 225 SER ALA GLU ASP LEU ASP LYS LEU ARG ASN ASP GLY TYR SEQRES 5 B 225 LEU MET PHE GLN GLN VAL PRO MET VAL GLU ILE ASP GLY SEQRES 6 B 225 MET LYS LEU VAL GLN THR ARG ALA ILE LEU ASN TYR ILE SEQRES 7 B 225 ALA SER LYS TYR ASN LEU TYR GLY LYS ASP ILE LYS GLU SEQRES 8 B 225 ARG ALA LEU ILE ASP MET TYR ILE GLU GLY ILE ALA ASP SEQRES 9 B 225 LEU GLY GLU MET ILE LEU LEU LEU PRO VAL CYS PRO PRO SEQRES 10 B 225 GLU GLU LYS ASP ALA LYS LEU ALA LEU ILE LYS GLU LYS SEQRES 11 B 225 ILE LYS ASN ARG TYR PHE PRO ALA PHE GLU LYS VAL LEU SEQRES 12 B 225 LYS SER HIS GLY GLN ASP TYR LEU VAL GLY ASN LYS LEU SEQRES 13 B 225 SER ARG ALA ASP ILE HIS LEU VAL GLU LEU LEU TYR TYR SEQRES 14 B 225 VAL GLU GLU LEU ASP SER SER LEU ILE SER SER PHE PRO SEQRES 15 B 225 LEU LEU LYS ALA LEU LYS THR ARG ILE SER ASN LEU PRO SEQRES 16 B 225 THR VAL LYS LYS PHE LEU GLN PRO GLY SER PRO ARG LYS SEQRES 17 B 225 PRO PRO MET ASP GLU LYS SER LEU GLU GLU HIS ARG LYS SEQRES 18 B 225 ILE PHE ARG PHE HET GSH A1001 20 HET CL A1002 1 HET K A3001 1 HET GSH B1001 20 HET CL B1002 1 HET K B3001 1 HETNAM GSH GLUTATHIONE HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION FORMUL 3 GSH 2(C10 H17 N3 O6 S) FORMUL 4 CL 2(CL 1-) FORMUL 5 K 2(K 1+) FORMUL 9 HOH *259(H2 O) HELIX 1 1 ARG A 13 ARG A 15 5 3 HELIX 2 2 MET A 16 ALA A 26 1 11 HELIX 3 3 SER A 37 ASP A 47 1 11 HELIX 4 4 GLN A 67 TYR A 79 1 13 HELIX 5 5 ASP A 85 LEU A 108 1 24 HELIX 6 6 GLU A 116 ARG A 131 1 16 HELIX 7 7 ARG A 131 GLY A 144 1 14 HELIX 8 8 SER A 154 ASP A 171 1 18 HELIX 9 9 PHE A 178 ASN A 190 1 13 HELIX 10 10 LEU A 191 GLN A 199 1 9 HELIX 11 11 ASP A 209 PHE A 220 1 12 HELIX 12 12 ARG B 13 ARG B 15 5 3 HELIX 13 13 MET B 16 ALA B 26 1 11 HELIX 14 14 SER B 37 ASP B 47 1 11 HELIX 15 15 GLN B 67 TYR B 79 1 13 HELIX 16 16 ASP B 85 LEU B 108 1 24 HELIX 17 17 LEU B 109 CYS B 112 5 4 HELIX 18 18 PRO B 113 GLU B 115 5 3 HELIX 19 19 GLU B 116 ARG B 131 1 16 HELIX 20 20 ARG B 131 GLY B 144 1 14 HELIX 21 21 SER B 154 ASP B 171 1 18 HELIX 22 22 PHE B 178 ASN B 190 1 13 HELIX 23 23 LEU B 191 GLN B 199 1 9 HELIX 24 24 LYS B 211 ARG B 217 1 7 SHEET 1 AA 4 GLU A 31 PHE A 34 0 SHEET 2 AA 4 LYS A 6 TYR A 9 1 O LEU A 7 N LYS A 33 SHEET 3 AA 4 MET A 57 ILE A 60 -1 O MET A 57 N HIS A 8 SHEET 4 AA 4 MET A 63 VAL A 66 -1 O MET A 63 N ILE A 60 SHEET 1 BA 4 GLU B 31 PHE B 34 0 SHEET 2 BA 4 LYS B 6 TYR B 9 1 O LEU B 7 N LYS B 33 SHEET 3 BA 4 MET B 57 ILE B 60 -1 O MET B 57 N HIS B 8 SHEET 4 BA 4 MET B 63 VAL B 66 -1 O MET B 63 N ILE B 60 LINK N LEU A 148 K K A3001 1555 1555 3.60 LINK O VAL A 149 K K A3001 1555 1555 3.14 LINK N VAL A 149 K K A3001 1555 1555 3.05 LINK O LYS A 152 K K A3001 1555 1555 2.84 LINK OG SER A 154 K K A3001 1555 1555 2.65 LINK N SER A 154 K K A3001 1555 1555 3.47 LINK OD2 ASP A 157 K K A3001 1555 1555 2.45 LINK OD1 ASP A 157 K K A3001 1555 1555 3.68 LINK N LEU B 148 K K B3001 1555 1555 3.47 LINK O VAL B 149 K K B3001 1555 1555 3.03 LINK N VAL B 149 K K B3001 1555 1555 3.05 LINK O LYS B 152 K K B3001 1555 1555 2.80 LINK N SER B 154 K K B3001 1555 1555 3.54 LINK OG SER B 154 K K B3001 1555 1555 2.73 LINK OD1 ASP B 157 K K B3001 1555 1555 3.62 LINK OD2 ASP B 157 K K B3001 1555 1555 2.52 CISPEP 1 VAL A 55 PRO A 56 0 3.61 CISPEP 2 VAL B 55 PRO B 56 0 6.41 SITE 1 AC1 2 ARG A 155 HIS A 159 SITE 1 AC2 5 LEU A 148 VAL A 149 LYS A 152 SER A 154 SITE 2 AC2 5 ASP A 157 SITE 1 AC3 2 ARG B 155 HIS B 159 SITE 1 AC4 5 LEU B 148 VAL B 149 LYS B 152 SER B 154 SITE 2 AC4 5 ASP B 157 SITE 1 AC5 11 TYR A 9 ARG A 45 GLN A 54 VAL A 55 SITE 2 AC5 11 PRO A 56 GLN A 67 THR A 68 HOH A2113 SITE 3 AC5 11 HOH A2114 ASP B 101 ARG B 131 SITE 1 AC6 10 ASP A 101 ARG A 131 TYR B 9 ARG B 45 SITE 2 AC6 10 GLN B 54 VAL B 55 PRO B 56 GLN B 67 SITE 3 AC6 10 THR B 68 HOH B2145 CRYST1 98.906 92.050 51.272 90.00 93.21 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010111 0.000000 0.000566 0.00000 SCALE2 0.000000 0.010864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019534 0.00000