HEADER CELL DIVISION 22-DEC-03 1UUJ TITLE N-TERMINAL DOMAIN OF LISSENCEPHALY-1 PROTEIN (LIS-1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA COMPND 3 SUBUNIT; COMPND 4 CHAIN: A, B, C, D; COMPND 5 FRAGMENT: N-TERMINAL DOMAIN RESIDUES 1-85; COMPND 6 SYNONYM: LISSENCEPHALY-1 PROTEIN, PAF, PAF-AH ALPHA, ACETYLHYDROLASE COMPND 7 45 KDA SUBUNIT, PAF-AH 45 KDA SUBUNIT, PAFAH ALPHA, LIS-1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 ORGAN: BRAIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGSTUNI1 KEYWDS PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE, MITOSIS, NEUROGENESIS, KEYWDS 2 CYTOSKELETON, CELL DIVISION, MICROTUBULE EXPDTA X-RAY DIFFRACTION AUTHOR D.R.COOPER,M.H.KIM,Y.DEVEDJIEV,U.DEREWENDA,Z.S.DEREWENDA REVDAT 5 29-MAY-19 1UUJ 1 REMARK LINK REVDAT 4 28-JUN-17 1UUJ 1 REMARK REVDAT 3 13-JUL-11 1UUJ 1 VERSN REVDAT 2 24-FEB-09 1UUJ 1 VERSN REVDAT 1 29-JUL-04 1UUJ 0 JRNL AUTH M.H.KIM,D.R.COOPER,A.OLEKSY,Y.DEVEDJIEV,U.DEREWENDA, JRNL AUTH 2 O.REINER,J.OTLEWSKI,Z.S.DEREWENDA JRNL TITL THE STRUCTURE OF THE N-TERMINAL DOMAIN OF THE PRODUCT OF THE JRNL TITL 2 LISSENCEPHALY GENE LIS1 AND ITS FUNCTIONAL IMPLICATIONS JRNL REF STRUCTURE V. 12 987 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15274919 JRNL DOI 10.1016/J.STR.2004.03.024 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 31827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1069 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1792 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2558 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.377 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2612 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2371 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3481 ; 2.883 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5559 ; 1.591 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 303 ; 4.785 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 367 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2818 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 497 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 612 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2664 ; 0.238 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1611 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 113 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.262 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 109 ; 0.238 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1529 ; 1.148 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2428 ; 2.188 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1083 ; 3.604 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1053 ; 5.756 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4580 46.3120 2.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.0481 REMARK 3 T33: 0.0675 T12: -0.0082 REMARK 3 T13: 0.0066 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.9598 L22: 1.9555 REMARK 3 L33: 1.6349 L12: -0.8108 REMARK 3 L13: 0.4325 L23: -1.0704 REMARK 3 S TENSOR REMARK 3 S11: -0.1551 S12: -0.1631 S13: 0.1532 REMARK 3 S21: 0.3385 S22: 0.1163 S23: 0.0139 REMARK 3 S31: -0.4126 S32: -0.0050 S33: 0.0388 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 74 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8910 40.9830 -5.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.0913 T22: 0.0730 REMARK 3 T33: 0.0309 T12: -0.0187 REMARK 3 T13: 0.0027 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 1.5561 L22: 2.1404 REMARK 3 L33: 1.4081 L12: -0.3568 REMARK 3 L13: 0.3494 L23: -0.4451 REMARK 3 S TENSOR REMARK 3 S11: -0.1219 S12: 0.1480 S13: 0.0888 REMARK 3 S21: -0.1989 S22: 0.1239 S23: 0.0508 REMARK 3 S31: -0.1489 S32: -0.0507 S33: -0.0020 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 76 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6870 14.6750 24.0130 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.0511 REMARK 3 T33: 0.0090 T12: -0.0104 REMARK 3 T13: -0.0030 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 1.8629 L22: 1.6267 REMARK 3 L33: 0.1528 L12: -0.7413 REMARK 3 L13: 0.0721 L23: -0.5097 REMARK 3 S TENSOR REMARK 3 S11: -0.0993 S12: -0.2897 S13: -0.1341 REMARK 3 S21: 0.3027 S22: 0.1495 S23: -0.0413 REMARK 3 S31: 0.0767 S32: 0.0163 S33: -0.0502 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 78 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0890 17.4390 16.1410 REMARK 3 T TENSOR REMARK 3 T11: 0.0914 T22: 0.0389 REMARK 3 T33: 0.0402 T12: 0.0003 REMARK 3 T13: -0.0128 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.9477 L22: 2.1461 REMARK 3 L33: 0.5493 L12: -0.7688 REMARK 3 L13: -0.1380 L23: -0.6782 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.0304 S13: -0.0226 REMARK 3 S21: 0.1436 S22: -0.0807 S23: -0.0431 REMARK 3 S31: 0.0557 S32: 0.0210 S33: 0.0676 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1UUJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1290013916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979392,0.979528, 0.964216 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33378 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, SHARP, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN USING SITTING-DROP REMARK 280 VAPOUR-DIFFUSION UNDER MINERAL OIL USING A 1:1 MIXTURE OF REMARK 280 PROTEIN AND 1.7 M (NH4)2SO4 AND 0.1 M NA3-CITRATE, PH 4.5, PH REMARK 280 4.50, MICROBATCH REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.49400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.87650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.49400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.87650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 GLU A 78 REMARK 465 PHE A 79 REMARK 465 THR A 80 REMARK 465 SER A 81 REMARK 465 GLY A 82 REMARK 465 GLY A 83 REMARK 465 PRO A 84 REMARK 465 LEU A 85 REMARK 465 GLY A 86 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 LYS B 76 REMARK 465 GLU B 77 REMARK 465 GLU B 78 REMARK 465 PHE B 79 REMARK 465 THR B 80 REMARK 465 SER B 81 REMARK 465 GLY B 82 REMARK 465 GLY B 83 REMARK 465 PRO B 84 REMARK 465 LEU B 85 REMARK 465 GLY B 86 REMARK 465 GLY C -1 REMARK 465 ALA C 0 REMARK 465 MSE C 1 REMARK 465 THR C 80 REMARK 465 SER C 81 REMARK 465 GLY C 82 REMARK 465 GLY C 83 REMARK 465 PRO C 84 REMARK 465 LEU C 85 REMARK 465 GLY C 86 REMARK 465 GLY D -1 REMARK 465 ALA D 0 REMARK 465 THR D 80 REMARK 465 SER D 81 REMARK 465 GLY D 82 REMARK 465 GLY D 83 REMARK 465 PRO D 84 REMARK 465 LEU D 85 REMARK 465 GLY D 86 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 2006 O HOH D 2008 1.95 REMARK 500 O HOH A 2006 O HOH A 2020 2.15 REMARK 500 OH TYR D 24 O HOH D 2020 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 17 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 20 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 20 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 LEU A 37 CB - CG - CD2 ANGL. DEV. = -11.1 DEGREES REMARK 500 ASP A 44 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 LEU A 72 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU B 3 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 ARG B 8 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 13 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 13 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP B 17 CB - CG - OD1 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP B 17 CB - CG - OD2 ANGL. DEV. = 9.2 DEGREES REMARK 500 SER B 21 CB - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 GLU B 52 OE1 - CD - OE2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG B 60 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG B 60 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG C 13 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP C 44 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 MSE C 66 CG - SE - CE ANGL. DEV. = -14.6 DEGREES REMARK 500 ARG D 6 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG D 20 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 SER D 29 CA - CB - OG ANGL. DEV. = -16.8 DEGREES REMARK 500 LYS D 32 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 GLU D 52 OE1 - CD - OE2 ANGL. DEV. = 8.9 DEGREES REMARK 500 LYS D 54 CD - CE - NZ ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG D 60 CB - CG - CD ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG D 60 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG D 60 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 78 45.39 -86.71 REMARK 500 VAL D 2 92.14 63.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1078 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1076 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B1077 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1080 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D1080 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ C1081 REMARK 999 REMARK 999 SEQUENCE REMARK 999 INITIAL 2 RESIDUES ARE CLONING ARTIFACTS. DBREF 1UUJ A -1 1 PDB 1UUJ 1UUJ -1 1 DBREF 1UUJ A 2 86 UNP P43035 LIS1_MOUSE 1 85 DBREF 1UUJ B -1 1 PDB 1UUJ 1UUJ -1 1 DBREF 1UUJ B 2 86 UNP P43035 LIS1_MOUSE 1 85 DBREF 1UUJ C -1 1 PDB 1UUJ 1UUJ -1 1 DBREF 1UUJ C 2 86 UNP P43035 LIS1_MOUSE 1 85 DBREF 1UUJ D -1 1 PDB 1UUJ 1UUJ -1 1 DBREF 1UUJ D 2 86 UNP P43035 LIS1_MOUSE 1 85 SEQRES 1 A 88 GLY ALA MSE VAL LEU SER GLN ARG GLN ARG ASP GLU LEU SEQRES 2 A 88 ASN ARG ALA ILE ALA ASP TYR LEU ARG SER ASN GLY TYR SEQRES 3 A 88 GLU GLU ALA TYR SER VAL PHE LYS LYS GLU ALA GLU LEU SEQRES 4 A 88 ASP MSE ASN GLU GLU LEU ASP LYS LYS TYR ALA GLY LEU SEQRES 5 A 88 LEU GLU LYS LYS TRP THR SER VAL ILE ARG LEU GLN LYS SEQRES 6 A 88 LYS VAL MSE GLU LEU GLU SER LYS LEU ASN GLU ALA LYS SEQRES 7 A 88 GLU GLU PHE THR SER GLY GLY PRO LEU GLY SEQRES 1 B 88 GLY ALA MSE VAL LEU SER GLN ARG GLN ARG ASP GLU LEU SEQRES 2 B 88 ASN ARG ALA ILE ALA ASP TYR LEU ARG SER ASN GLY TYR SEQRES 3 B 88 GLU GLU ALA TYR SER VAL PHE LYS LYS GLU ALA GLU LEU SEQRES 4 B 88 ASP MSE ASN GLU GLU LEU ASP LYS LYS TYR ALA GLY LEU SEQRES 5 B 88 LEU GLU LYS LYS TRP THR SER VAL ILE ARG LEU GLN LYS SEQRES 6 B 88 LYS VAL MSE GLU LEU GLU SER LYS LEU ASN GLU ALA LYS SEQRES 7 B 88 GLU GLU PHE THR SER GLY GLY PRO LEU GLY SEQRES 1 C 88 GLY ALA MSE VAL LEU SER GLN ARG GLN ARG ASP GLU LEU SEQRES 2 C 88 ASN ARG ALA ILE ALA ASP TYR LEU ARG SER ASN GLY TYR SEQRES 3 C 88 GLU GLU ALA TYR SER VAL PHE LYS LYS GLU ALA GLU LEU SEQRES 4 C 88 ASP MSE ASN GLU GLU LEU ASP LYS LYS TYR ALA GLY LEU SEQRES 5 C 88 LEU GLU LYS LYS TRP THR SER VAL ILE ARG LEU GLN LYS SEQRES 6 C 88 LYS VAL MSE GLU LEU GLU SER LYS LEU ASN GLU ALA LYS SEQRES 7 C 88 GLU GLU PHE THR SER GLY GLY PRO LEU GLY SEQRES 1 D 88 GLY ALA MSE VAL LEU SER GLN ARG GLN ARG ASP GLU LEU SEQRES 2 D 88 ASN ARG ALA ILE ALA ASP TYR LEU ARG SER ASN GLY TYR SEQRES 3 D 88 GLU GLU ALA TYR SER VAL PHE LYS LYS GLU ALA GLU LEU SEQRES 4 D 88 ASP MSE ASN GLU GLU LEU ASP LYS LYS TYR ALA GLY LEU SEQRES 5 D 88 LEU GLU LYS LYS TRP THR SER VAL ILE ARG LEU GLN LYS SEQRES 6 D 88 LYS VAL MSE GLU LEU GLU SER LYS LEU ASN GLU ALA LYS SEQRES 7 D 88 GLU GLU PHE THR SER GLY GLY PRO LEU GLY MODRES 1UUJ MSE A 39 MET SELENOMETHIONINE MODRES 1UUJ MSE A 66 MET SELENOMETHIONINE MODRES 1UUJ MSE B 39 MET SELENOMETHIONINE MODRES 1UUJ MSE B 66 MET SELENOMETHIONINE MODRES 1UUJ MSE C 39 MET SELENOMETHIONINE MODRES 1UUJ MSE C 66 MET SELENOMETHIONINE MODRES 1UUJ MSE D 1 MET SELENOMETHIONINE MODRES 1UUJ MSE D 39 MET SELENOMETHIONINE MODRES 1UUJ MSE D 66 MET SELENOMETHIONINE HET MSE A 39 8 HET MSE A 66 8 HET MSE B 39 8 HET MSE B 66 8 HET MSE C 39 8 HET MSE C 66 8 HET MSE D 1 8 HET MSE D 39 8 HET MSE D 66 8 HET SO4 A1078 5 HET SO4 B1076 5 HET ACT B1077 4 HET SO4 C1080 5 HET BEZ C1081 9 HET SO4 D1080 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM BEZ BENZOIC ACID FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 ACT C2 H3 O2 1- FORMUL 9 BEZ C7 H6 O2 FORMUL 11 HOH *181(H2 O) HELIX 1 1 SER A 4 ASN A 22 1 19 HELIX 2 2 TYR A 24 ALA A 35 1 12 HELIX 3 3 ASN A 40 ALA A 48 1 9 HELIX 4 4 GLY A 49 THR A 56 1 8 HELIX 5 5 SER A 57 ALA A 75 1 19 HELIX 6 6 SER B 4 ASN B 22 1 19 HELIX 7 7 TYR B 24 ALA B 35 1 12 HELIX 8 8 ASN B 40 LYS B 45 1 6 HELIX 9 9 LYS B 46 ALA B 48 5 3 HELIX 10 10 GLY B 49 ALA B 75 1 27 HELIX 11 11 SER C 4 ASN C 22 1 19 HELIX 12 12 TYR C 24 GLU C 36 1 13 HELIX 13 13 GLU C 41 ALA C 48 5 8 HELIX 14 14 GLY C 49 THR C 56 1 8 HELIX 15 15 SER C 57 GLU C 78 1 22 HELIX 16 16 SER D 4 ASN D 22 1 19 HELIX 17 17 TYR D 24 ALA D 35 1 12 HELIX 18 18 ASN D 40 ALA D 48 1 9 HELIX 19 19 GLY D 49 PHE D 79 1 31 LINK C ASP A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N ASN A 40 1555 1555 1.33 LINK C VAL A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N GLU A 67 1555 1555 1.32 LINK C ASP B 38 N MSE B 39 1555 1555 1.33 LINK C MSE B 39 N ASN B 40 1555 1555 1.32 LINK C VAL B 65 N MSE B 66 1555 1555 1.33 LINK C MSE B 66 N GLU B 67 1555 1555 1.33 LINK C ASP C 38 N MSE C 39 1555 1555 1.34 LINK C MSE C 39 N ASN C 40 1555 1555 1.34 LINK C VAL C 65 N MSE C 66 1555 1555 1.33 LINK C MSE C 66 N GLU C 67 1555 1555 1.33 LINK C MSE D 1 N VAL D 2 1555 1555 1.32 LINK C ASP D 38 N MSE D 39 1555 1555 1.34 LINK C MSE D 39 N ASN D 40 1555 1555 1.32 LINK C VAL D 65 N MSE D 66 1555 1555 1.34 LINK C MSE D 66 N GLU D 67 1555 1555 1.33 SITE 1 AC1 5 LYS A 53 ARG A 60 LYS A 64 HOH A2036 SITE 2 AC1 5 GLN B 62 SITE 1 AC2 5 SER B 57 ARG B 60 HOH B2035 HOH B2039 SITE 2 AC2 5 LYS D 64 SITE 1 AC3 5 ARG B 20 TYR B 28 LYS B 32 MSE B 39 SITE 2 AC3 5 HOH B2045 SITE 1 AC4 4 LYS C 53 ARG C 60 HOH C2043 GLN D 62 SITE 1 AC5 5 LYS B 64 SER D 57 ARG D 60 HOH D2055 SITE 2 AC5 5 HOH D2056 SITE 1 AC6 8 GLN A 62 ARG B 60 LYS B 64 GLN C 62 SITE 2 AC6 8 HOH C2044 ARG D 60 LYS D 64 HOH D2050 CRYST1 62.988 111.753 47.397 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015876 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008948 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021098 0.00000