HEADER TRANSFERASE 05-FEB-04 1UWJ TITLE THE COMPLEX OF MUTANT V599E B-RAF AND BAY439006. COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 447-722; COMPND 5 SYNONYM: BRAF, V-RAF MURINE SARCOMA VIRAL ONCOGENE HOMOLOG B1, P94; COMPND 6 EC: 2.7.1.37, 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TRANSFERASE, THREONINE-PROTEIN KINASE, SIGNAL TRANSDUCTION EXPDTA X-RAY DIFFRACTION AUTHOR D.BARFORD,S.M.ROE,P.T.C.WAN,CANCER GENOME PROJECT REVDAT 5 01-MAY-24 1UWJ 1 REMARK REVDAT 4 17-JAN-18 1UWJ 1 TITLE REVDAT 3 16-JAN-13 1UWJ 1 HEADER COMPND SOURCE KEYWDS REVDAT 3 2 1 REMARK VERSN HETSYN FORMUL REVDAT 2 24-FEB-09 1UWJ 1 VERSN REVDAT 1 19-MAR-04 1UWJ 0 JRNL AUTH P.T.C.WAN,M.J.GARNETT,S.M.ROE,S.LEE,D.NICULESCU-DUVAZ, JRNL AUTH 2 V.M.GOOD,C.M.JONES,C.J.MARSHALL,C.J.SPRINGER,D.BARFORD, JRNL AUTH 3 R.MARAIS JRNL TITL MECHANISM OF ACTIVATION OF THE RAF-ERK SIGNALING PATHWAY BY JRNL TITL 2 ONCOGENIC MUTATIONS OF B-RAF JRNL REF CELL(CAMBRIDGE,MASS.) V. 116 855 2004 JRNL REFN ISSN 0092-8674 JRNL PMID 15035987 JRNL DOI 10.1016/S0092-8674(04)00215-6 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4325007.310 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.275 REMARK 3 FREE R VALUE : 0.357 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 566 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.015 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1646 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 99 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.038 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4216 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 5.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.19000 REMARK 3 B22 (A**2) : 2.19000 REMARK 3 B33 (A**2) : -4.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM SIGMAA (A) : 0.34 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.63 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.68 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.010 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.42 REMARK 3 BSOL : 34.26 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : BAY4.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : BAY4.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES AT THE N AND C-TERMINI AND REMARK 3 PART OF THE ACTIVATION LOOP (602-613) ARE DISORDERED AND NOT REMARK 3 SEEN. REMARK 4 REMARK 4 1UWJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1290014524. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9202 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10811 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: IN-HOUSE BRAF STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.03500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.83000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.83000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.01750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.83000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.83000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 126.05250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.83000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.83000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.01750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.83000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.83000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 126.05250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.03500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUTATION VAL 599 GLU REMARK 400 REMARK 400 INVOLVED IN MITOGENIC SIGNAL TRANSDUCTION FROM REMARK 400 THE CELL MEMBRANE TO THE NUCLEUS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 602 REMARK 465 TRP A 603 REMARK 465 SER A 604 REMARK 465 GLY A 605 REMARK 465 SER A 606 REMARK 465 HIS A 607 REMARK 465 GLN A 608 REMARK 465 PHE A 609 REMARK 465 GLU A 610 REMARK 465 GLN A 611 REMARK 465 LEU A 612 REMARK 465 SER A 613 REMARK 465 SER B 601 REMARK 465 ARG B 602 REMARK 465 TRP B 603 REMARK 465 SER B 604 REMARK 465 GLY B 605 REMARK 465 SER B 606 REMARK 465 HIS B 607 REMARK 465 GLN B 608 REMARK 465 PHE B 609 REMARK 465 GLU B 610 REMARK 465 GLN B 611 REMARK 465 LEU B 612 REMARK 465 SER B 613 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 631 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 457 85.61 -65.86 REMARK 500 VAL A 458 107.31 -49.33 REMARK 500 TRP A 475 93.86 -169.05 REMARK 500 LEU A 484 -74.78 -95.80 REMARK 500 VAL A 486 -114.90 -151.19 REMARK 500 THR A 487 -48.16 -20.22 REMARK 500 ARG A 508 81.02 -166.69 REMARK 500 LYS A 521 176.93 -47.53 REMARK 500 PRO A 522 82.12 -4.76 REMARK 500 GLN A 523 143.78 74.71 REMARK 500 ARG A 574 -2.30 67.88 REMARK 500 ASP A 575 32.22 -160.66 REMARK 500 SER A 578 -19.50 -48.79 REMARK 500 LEU A 587 123.86 178.09 REMARK 500 THR A 588 110.81 102.96 REMARK 500 ASP A 593 75.02 -106.43 REMARK 500 PHE A 594 24.79 -68.47 REMARK 500 GLU A 599 102.76 -53.30 REMARK 500 LYS A 600 -174.26 -57.32 REMARK 500 SER A 615 96.45 -179.10 REMARK 500 MET A 626 105.64 80.39 REMARK 500 ASP A 628 -88.38 27.11 REMARK 500 LYS A 629 -39.60 -137.16 REMARK 500 TYR A 655 22.10 43.70 REMARK 500 ASN A 659 73.12 -100.15 REMARK 500 ASN A 660 104.01 -172.40 REMARK 500 LEU A 677 -5.86 -48.94 REMARK 500 SER A 678 30.27 -86.13 REMARK 500 ARG A 681 151.09 -47.48 REMARK 500 LYS A 689 -33.38 -39.58 REMARK 500 LEU A 696 2.13 -60.52 REMARK 500 ASP A 701 6.27 -63.78 REMARK 500 LEU A 716 45.79 -68.39 REMARK 500 ALA A 717 -51.56 -135.41 REMARK 500 LEU A 720 -15.10 -175.73 REMARK 500 THR B 457 83.93 -65.12 REMARK 500 VAL B 458 109.40 -48.25 REMARK 500 LYS B 472 109.41 -58.96 REMARK 500 TRP B 475 94.77 -168.19 REMARK 500 LEU B 484 -75.34 -94.83 REMARK 500 VAL B 486 -116.31 -152.81 REMARK 500 THR B 487 -47.09 -19.81 REMARK 500 ARG B 508 79.94 -167.80 REMARK 500 LYS B 521 177.54 -48.05 REMARK 500 PRO B 522 81.35 -4.99 REMARK 500 GLN B 523 143.02 75.61 REMARK 500 GLU B 544 55.64 39.96 REMARK 500 ARG B 574 -0.46 66.05 REMARK 500 ASP B 575 29.67 -159.96 REMARK 500 SER B 578 -18.88 -49.55 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BAX A 1723 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BAX B 1723 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UWH RELATED DB: PDB REMARK 900 THE COMPLEX OF WILD TYPE B-RAF AND BAY439006 DBREF 1UWJ A 447 722 UNP P15056 BRAF_HUMAN 447 722 DBREF 1UWJ B 447 722 UNP P15056 BRAF_HUMAN 447 722 SEQADV 1UWJ GLU A 599 UNP P15056 VAL 599 ENGINEERED MUTATION SEQADV 1UWJ GLU B 599 UNP P15056 VAL 599 ENGINEERED MUTATION SEQRES 1 A 276 ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL GLY SEQRES 2 A 276 GLN ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR LYS SEQRES 3 A 276 GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU ASN SEQRES 4 A 276 VAL THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE LYS SEQRES 5 A 276 ASN GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL ASN SEQRES 6 A 276 ILE LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN LEU SEQRES 7 A 276 ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU TYR SEQRES 8 A 276 HIS HIS LEU HIS ILE ILE GLU THR LYS PHE GLU MET ILE SEQRES 9 A 276 LYS LEU ILE ASP ILE ALA ARG GLN THR ALA GLN GLY MET SEQRES 10 A 276 ASP TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP LEU SEQRES 11 A 276 LYS SER ASN ASN ILE PHE LEU HIS GLU ASP LEU THR VAL SEQRES 12 A 276 LYS ILE GLY ASP PHE GLY LEU ALA THR GLU LYS SER ARG SEQRES 13 A 276 TRP SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SER SEQRES 14 A 276 ILE LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN ASP SEQRES 15 A 276 LYS ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA PHE SEQRES 16 A 276 GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU PRO SEQRES 17 A 276 TYR SER ASN ILE ASN ASN ARG ASP GLN ILE ILE PHE MET SEQRES 18 A 276 VAL GLY ARG GLY TYR LEU SER PRO ASP LEU SER LYS VAL SEQRES 19 A 276 ARG SER ASN CYS PRO LYS ALA MET LYS ARG LEU MET ALA SEQRES 20 A 276 GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO LEU PHE SEQRES 21 A 276 PRO GLN ILE LEU ALA SER ILE GLU LEU LEU ALA ARG SER SEQRES 22 A 276 LEU PRO LYS SEQRES 1 B 276 ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL GLY SEQRES 2 B 276 GLN ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR LYS SEQRES 3 B 276 GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU ASN SEQRES 4 B 276 VAL THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE LYS SEQRES 5 B 276 ASN GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL ASN SEQRES 6 B 276 ILE LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN LEU SEQRES 7 B 276 ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU TYR SEQRES 8 B 276 HIS HIS LEU HIS ILE ILE GLU THR LYS PHE GLU MET ILE SEQRES 9 B 276 LYS LEU ILE ASP ILE ALA ARG GLN THR ALA GLN GLY MET SEQRES 10 B 276 ASP TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP LEU SEQRES 11 B 276 LYS SER ASN ASN ILE PHE LEU HIS GLU ASP LEU THR VAL SEQRES 12 B 276 LYS ILE GLY ASP PHE GLY LEU ALA THR GLU LYS SER ARG SEQRES 13 B 276 TRP SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SER SEQRES 14 B 276 ILE LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN ASP SEQRES 15 B 276 LYS ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA PHE SEQRES 16 B 276 GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU PRO SEQRES 17 B 276 TYR SER ASN ILE ASN ASN ARG ASP GLN ILE ILE PHE MET SEQRES 18 B 276 VAL GLY ARG GLY TYR LEU SER PRO ASP LEU SER LYS VAL SEQRES 19 B 276 ARG SER ASN CYS PRO LYS ALA MET LYS ARG LEU MET ALA SEQRES 20 B 276 GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO LEU PHE SEQRES 21 B 276 PRO GLN ILE LEU ALA SER ILE GLU LEU LEU ALA ARG SER SEQRES 22 B 276 LEU PRO LYS HET BAX A1723 32 HET BAX B1723 32 HETNAM BAX 4-{4-[({[4-CHLORO-3-(TRIFLUOROMETHYL) HETNAM 2 BAX PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-N-METHYLPYRIDINE- HETNAM 3 BAX 2-CARBOXAMIDE HETSYN BAX SORAFENIB FORMUL 3 BAX 2(C21 H16 CL F3 N4 O3) FORMUL 5 HOH *(H2 O) HELIX 1 1 THR A 490 VAL A 503 1 14 HELIX 2 2 LEU A 536 ILE A 542 1 7 HELIX 3 3 GLU A 548 LYS A 569 1 22 HELIX 4 4 ALA A 620 MET A 626 1 7 HELIX 5 5 SER A 633 GLY A 651 1 19 HELIX 6 6 ASN A 660 GLY A 671 1 12 HELIX 7 7 PRO A 685 LEU A 696 1 12 HELIX 8 8 LYS A 699 ARG A 703 5 5 HELIX 9 9 LEU A 705 LEU A 716 1 12 HELIX 10 10 THR B 490 VAL B 503 1 14 HELIX 11 11 LEU B 536 ILE B 542 1 7 HELIX 12 12 GLU B 548 LYS B 569 1 22 HELIX 13 13 ALA B 620 MET B 626 1 7 HELIX 14 14 SER B 633 GLY B 651 1 19 HELIX 15 15 ASN B 660 GLY B 671 1 12 HELIX 16 16 PRO B 685 LEU B 696 1 12 HELIX 17 17 LYS B 699 ARG B 703 5 5 HELIX 18 18 LEU B 705 LEU B 716 1 12 SHEET 1 AA 5 ARG A 461 GLY A 465 0 SHEET 2 AA 5 GLY A 468 LYS A 474 -1 O GLY A 468 N GLY A 465 SHEET 3 AA 5 ASP A 478 MET A 483 -1 O VAL A 479 N GLY A 473 SHEET 4 AA 5 ALA A 525 GLN A 529 -1 O ILE A 526 N LYS A 482 SHEET 5 AA 5 PHE A 515 SER A 519 -1 N MET A 516 O VAL A 527 SHEET 1 AB 3 GLY A 533 SER A 535 0 SHEET 2 AB 3 ILE A 581 HIS A 584 -1 N LEU A 583 O SER A 534 SHEET 3 AB 3 VAL A 589 ILE A 591 -1 O LYS A 590 N PHE A 582 SHEET 1 BA 5 ARG B 461 GLY B 465 0 SHEET 2 BA 5 GLY B 468 LYS B 474 -1 O GLY B 468 N GLY B 465 SHEET 3 BA 5 ASP B 478 MET B 483 -1 O VAL B 479 N GLY B 473 SHEET 4 BA 5 ALA B 525 GLN B 529 -1 O ILE B 526 N LYS B 482 SHEET 5 BA 5 PHE B 515 SER B 519 -1 N MET B 516 O VAL B 527 SHEET 1 BB 3 GLY B 533 SER B 535 0 SHEET 2 BB 3 ILE B 581 HIS B 584 -1 N LEU B 583 O SER B 534 SHEET 3 BB 3 VAL B 589 ILE B 591 -1 O LYS B 590 N PHE B 582 SITE 1 AC1 15 ALA A 480 GLU A 500 ILE A 512 LEU A 513 SITE 2 AC1 15 THR A 528 GLN A 529 TRP A 530 CYS A 531 SITE 3 AC1 15 LEU A 566 HIS A 573 ILE A 591 GLY A 592 SITE 4 AC1 15 ASP A 593 ARG B 625 ARG B 670 SITE 1 AC2 15 VAL B 470 ALA B 480 GLU B 500 ILE B 512 SITE 2 AC2 15 LEU B 513 THR B 528 GLN B 529 TRP B 530 SITE 3 AC2 15 CYS B 531 LEU B 566 HIS B 573 ILE B 591 SITE 4 AC2 15 GLY B 592 ASP B 593 PHE B 594 CRYST1 97.660 97.660 168.070 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010240 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010240 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005950 0.00000