HEADER HYDROLASE 05-FEB-04 1UWL TITLE 1.76A STRUCTURE OF UROCANATE HYDRATASE FROM PSEUDOMONAS PUTIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROCANATE HYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UROCANASE, IMIDAZOLONEPROPIONATE HYDROLASE; COMPND 5 EC: 4.2.1.49; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: CONTAINING NAD+ SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: BL21 DE3 KEYWDS HYDROLASE, UROCANASE, IMIDAZOLONEPROPIONATE, HISTIDINE METABOLISM, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KESSLER,J.RETEY,G.E.SCHULZ REVDAT 5 08-MAY-24 1UWL 1 REMARK REVDAT 4 24-JUL-19 1UWL 1 REMARK REVDAT 3 16-JUN-09 1UWL 1 REMARK REVDAT 2 24-FEB-09 1UWL 1 VERSN REVDAT 1 19-AUG-04 1UWL 0 JRNL AUTH D.KESSLER,J.RETEY,G.E.SCHULZ JRNL TITL STRUCTURE AND ACTION OF UROCANASE JRNL REF J.MOL.BIOL. V. 342 183 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15313616 JRNL DOI 10.1016/J.JMB.2004.07.028 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 93721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4924 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8445 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 849 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.203 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1UWL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1290014527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.89,0.9824,0.9820,0.9103 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47378 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.80 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.71500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.81100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.71500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.81100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUTATION CYS 197 SER CHAINS A AND B. REMARK 400 REMARK 400 CATALYSES THE CONVERSION OF 3-(5-OXO-4,5-DIHYDRO-3-H- REMARK 400 IMIDAZOL-4-YL)PROPANOATE TO UROCANATE + H(2)O. REMARK 400 MEMBER OF THE HISTIDINE DEGRADATION PATHWAY. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 THR A 556 REMARK 465 GLY A 557 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ASN B 4 REMARK 465 ILE B 555 REMARK 465 THR B 556 REMARK 465 GLY B 557 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 555 CA C O CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ALA A 191 H CYS A 192 1.27 REMARK 500 C GLU A 197 H SER A 198 1.27 REMARK 500 C ALA B 191 H CYS B 192 1.33 REMARK 500 C GLU B 197 H SER B 198 1.42 REMARK 500 O GLY A 163 O HOH A 2182 1.75 REMARK 500 O HOH B 2030 O HOH B 2074 1.92 REMARK 500 NH1 ARG A 13 O HOH A 2016 2.00 REMARK 500 OE1 GLU B 369 O HOH B 2288 2.01 REMARK 500 O HOH A 2015 O HOH A 2016 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 116 CD GLU B 116 OE1 0.078 REMARK 500 VAL B 346 CB VAL B 346 CG1 -0.127 REMARK 500 VAL B 439 CB VAL B 439 CG2 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 9 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 57 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 LEU A 72 CB - CG - CD1 ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG A 257 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 341 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 509 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG B 57 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 100 CG - CD - NE ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG B 100 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 100 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP B 322 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 341 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 539 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 45 64.38 -153.69 REMARK 500 ILE A 55 41.83 -100.70 REMARK 500 SER A 85 60.23 34.59 REMARK 500 THR A 94 -113.03 -130.70 REMARK 500 GLN A 131 -135.51 46.99 REMARK 500 MET A 132 -67.82 -102.33 REMARK 500 ILE A 138 27.83 -146.08 REMARK 500 GLN A 264 40.72 -141.84 REMARK 500 TYR A 349 -46.02 -131.70 REMARK 500 SER A 452 88.47 -164.78 REMARK 500 ARG A 455 -103.59 -149.28 REMARK 500 ASN B 45 62.46 -157.16 REMARK 500 SER B 85 57.82 38.99 REMARK 500 THR B 94 -114.71 -128.51 REMARK 500 GLN B 131 -134.60 47.61 REMARK 500 MET B 132 -67.15 -102.80 REMARK 500 ILE B 138 28.12 -148.11 REMARK 500 LEU B 175 53.62 -118.66 REMARK 500 GLN B 264 39.40 -143.96 REMARK 500 TYR B 349 -51.64 -125.73 REMARK 500 SER B 452 89.02 -165.35 REMARK 500 ARG B 455 -104.33 -146.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1555 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 1555 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UWK RELATED DB: PDB REMARK 900 THE HIGH RESOLUTION STRUCTURE OF UROCANATE HYDRATASE FROM REMARK 900 PSEUDOMONAS PUTIDA IN COMPLEX WITH UROCANATE REMARK 900 RELATED ID: 1W1U RELATED DB: PDB REMARK 900 INACTIVE UROCANASE-SA COCRYSTALLIZED WITH UROCANATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONFLICT ANNONTATED IN THE RECORDS BELOW HAVE BEEN REMARK 999 DOCUMENTED IN UNIPROT AND DEPOSITED BY S.L.ALLISION REMARK 999 AND A.T.PHILIPS (NOV-1993). DBREF 1UWL A 1 557 UNP P25080 HUTU_PSEPU 0 556 DBREF 1UWL B 1 557 UNP P25080 HUTU_PSEPU 0 556 SEQADV 1UWL SER A 198 UNP P25080 CYS 197 ENGINEERED MUTATION SEQADV 1UWL SER B 198 UNP P25080 CYS 197 ENGINEERED MUTATION SEQADV 1UWL ASN A 6 UNP P25080 LYS 5 CONFLICT SEQADV 1UWL ASN B 6 UNP P25080 LYS 5 CONFLICT SEQADV 1UWL SER A 164 UNP P25080 THR 163 CONFLICT SEQADV 1UWL LEU A 165 UNP P25080 VAL 164 CONFLICT SEQADV 1UWL GLY A 167 UNP P25080 ALA 166 CONFLICT SEQADV 1UWL SER B 164 UNP P25080 THR 163 CONFLICT SEQADV 1UWL LEU B 165 UNP P25080 VAL 164 CONFLICT SEQADV 1UWL GLY B 167 UNP P25080 ALA 166 CONFLICT SEQRES 1 A 557 MET THR ASP ASN ASN ASN TYR ARG ASP VAL GLU ILE ARG SEQRES 2 A 557 ALA PRO ARG GLY ASN LYS LEU THR ALA LYS SER TRP LEU SEQRES 3 A 557 THR GLU ALA PRO LEU ARG MET LEU MET ASN ASN LEU ASP SEQRES 4 A 557 PRO GLN VAL ALA GLU ASN PRO LYS GLU LEU VAL VAL TYR SEQRES 5 A 557 GLY GLY ILE GLY ARG ALA ALA ARG ASN TRP GLU CYS TYR SEQRES 6 A 557 ASP LYS ILE VAL GLU THR LEU THR ARG LEU GLU ASP ASP SEQRES 7 A 557 GLU THR LEU LEU VAL GLN SER GLY LYS PRO VAL GLY VAL SEQRES 8 A 557 PHE LYS THR HIS SER ASN ALA PRO ARG VAL LEU ILE ALA SEQRES 9 A 557 ASN SER ASN LEU VAL PRO HIS TRP ALA ASN TRP GLU HIS SEQRES 10 A 557 PHE ASN GLU LEU ASP ALA LYS GLY LEU ALA MET TYR GLY SEQRES 11 A 557 GLN MET THR ALA GLY SER TRP ILE TYR ILE GLY SER GLN SEQRES 12 A 557 GLY ILE VAL GLN GLY THR TYR GLU THR PHE VAL GLU ALA SEQRES 13 A 557 GLY ARG GLN HIS TYR GLY GLY SER LEU LYS GLY LYS TRP SEQRES 14 A 557 VAL LEU THR ALA GLY LEU GLY GLY MET GLY GLY ALA GLN SEQRES 15 A 557 PRO LEU ALA ALA THR LEU ALA GLY ALA CYS SER LEU ASN SEQRES 16 A 557 ILE GLU SER GLN GLN SER ARG ILE ASP PHE ARG LEU GLU SEQRES 17 A 557 THR ARG TYR VAL ASP GLU GLN ALA THR ASP LEU ASP ASP SEQRES 18 A 557 ALA LEU VAL ARG ILE ALA LYS TYR THR ALA GLU GLY LYS SEQRES 19 A 557 ALA ILE SER ILE ALA LEU HIS GLY ASN ALA ALA GLU ILE SEQRES 20 A 557 LEU PRO GLU LEU VAL LYS ARG GLY VAL ARG PRO ASP MET SEQRES 21 A 557 VAL THR ASP GLN THR SER ALA HIS ASP PRO LEU ASN GLY SEQRES 22 A 557 TYR LEU PRO ALA GLY TRP THR TRP GLU GLN TYR ARG ASP SEQRES 23 A 557 ARG ALA GLN THR GLU PRO ALA ALA VAL VAL LYS ALA ALA SEQRES 24 A 557 LYS GLN SER MET ALA VAL HIS VAL GLN ALA MET LEU ASP SEQRES 25 A 557 PHE GLN LYS GLN GLY VAL PRO THR PHE ASP TYR GLY ASN SEQRES 26 A 557 ASN ILE ARG GLN MET ALA LYS GLU GLU GLY VAL ALA ASN SEQRES 27 A 557 ALA PHE ASP PHE PRO GLY PHE VAL PRO ALA TYR ILE ARG SEQRES 28 A 557 PRO LEU PHE CYS ARG GLY VAL GLY PRO PHE ARG TRP ALA SEQRES 29 A 557 ALA LEU SER GLY GLU ALA GLU ASP ILE TYR LYS THR ASP SEQRES 30 A 557 ALA LYS VAL LYS GLU LEU ILE PRO ASP ASP ALA HIS LEU SEQRES 31 A 557 HIS ARG TRP LEU ASP MET ALA ARG GLU ARG ILE SER PHE SEQRES 32 A 557 GLN GLY LEU PRO ALA ARG ILE CYS TRP VAL GLY LEU GLY SEQRES 33 A 557 LEU ARG ALA LYS LEU GLY LEU ALA PHE ASN GLU MET VAL SEQRES 34 A 557 ARG SER GLY GLU LEU SER ALA PRO VAL VAL ILE GLY ARG SEQRES 35 A 557 ASP HIS LEU ASP SER GLY SER VAL SER SER PRO ASN ARG SEQRES 36 A 557 GLU THR GLU ALA MET ARG ASP GLY SER ASP ALA VAL SER SEQRES 37 A 557 ASP TRP PRO LEU LEU ASN ALA LEU LEU ASN THR ALA GLY SEQRES 38 A 557 GLY ALA THR TRP VAL SER LEU HIS HIS GLY GLY GLY VAL SEQRES 39 A 557 GLY MET GLY PHE SER GLN HIS SER GLY MET VAL ILE VAL SEQRES 40 A 557 CYS ASP GLY THR ASP GLU ALA ALA GLU ARG ILE ALA ARG SEQRES 41 A 557 VAL LEU THR ASN ASP PRO GLY THR GLY VAL MET ARG HIS SEQRES 42 A 557 ALA ASP ALA GLY TYR ASP ILE ALA ILE ASP CYS ALA LYS SEQRES 43 A 557 GLU GLN GLY LEU ASP LEU PRO MET ILE THR GLY SEQRES 1 B 557 MET THR ASP ASN ASN ASN TYR ARG ASP VAL GLU ILE ARG SEQRES 2 B 557 ALA PRO ARG GLY ASN LYS LEU THR ALA LYS SER TRP LEU SEQRES 3 B 557 THR GLU ALA PRO LEU ARG MET LEU MET ASN ASN LEU ASP SEQRES 4 B 557 PRO GLN VAL ALA GLU ASN PRO LYS GLU LEU VAL VAL TYR SEQRES 5 B 557 GLY GLY ILE GLY ARG ALA ALA ARG ASN TRP GLU CYS TYR SEQRES 6 B 557 ASP LYS ILE VAL GLU THR LEU THR ARG LEU GLU ASP ASP SEQRES 7 B 557 GLU THR LEU LEU VAL GLN SER GLY LYS PRO VAL GLY VAL SEQRES 8 B 557 PHE LYS THR HIS SER ASN ALA PRO ARG VAL LEU ILE ALA SEQRES 9 B 557 ASN SER ASN LEU VAL PRO HIS TRP ALA ASN TRP GLU HIS SEQRES 10 B 557 PHE ASN GLU LEU ASP ALA LYS GLY LEU ALA MET TYR GLY SEQRES 11 B 557 GLN MET THR ALA GLY SER TRP ILE TYR ILE GLY SER GLN SEQRES 12 B 557 GLY ILE VAL GLN GLY THR TYR GLU THR PHE VAL GLU ALA SEQRES 13 B 557 GLY ARG GLN HIS TYR GLY GLY SER LEU LYS GLY LYS TRP SEQRES 14 B 557 VAL LEU THR ALA GLY LEU GLY GLY MET GLY GLY ALA GLN SEQRES 15 B 557 PRO LEU ALA ALA THR LEU ALA GLY ALA CYS SER LEU ASN SEQRES 16 B 557 ILE GLU SER GLN GLN SER ARG ILE ASP PHE ARG LEU GLU SEQRES 17 B 557 THR ARG TYR VAL ASP GLU GLN ALA THR ASP LEU ASP ASP SEQRES 18 B 557 ALA LEU VAL ARG ILE ALA LYS TYR THR ALA GLU GLY LYS SEQRES 19 B 557 ALA ILE SER ILE ALA LEU HIS GLY ASN ALA ALA GLU ILE SEQRES 20 B 557 LEU PRO GLU LEU VAL LYS ARG GLY VAL ARG PRO ASP MET SEQRES 21 B 557 VAL THR ASP GLN THR SER ALA HIS ASP PRO LEU ASN GLY SEQRES 22 B 557 TYR LEU PRO ALA GLY TRP THR TRP GLU GLN TYR ARG ASP SEQRES 23 B 557 ARG ALA GLN THR GLU PRO ALA ALA VAL VAL LYS ALA ALA SEQRES 24 B 557 LYS GLN SER MET ALA VAL HIS VAL GLN ALA MET LEU ASP SEQRES 25 B 557 PHE GLN LYS GLN GLY VAL PRO THR PHE ASP TYR GLY ASN SEQRES 26 B 557 ASN ILE ARG GLN MET ALA LYS GLU GLU GLY VAL ALA ASN SEQRES 27 B 557 ALA PHE ASP PHE PRO GLY PHE VAL PRO ALA TYR ILE ARG SEQRES 28 B 557 PRO LEU PHE CYS ARG GLY VAL GLY PRO PHE ARG TRP ALA SEQRES 29 B 557 ALA LEU SER GLY GLU ALA GLU ASP ILE TYR LYS THR ASP SEQRES 30 B 557 ALA LYS VAL LYS GLU LEU ILE PRO ASP ASP ALA HIS LEU SEQRES 31 B 557 HIS ARG TRP LEU ASP MET ALA ARG GLU ARG ILE SER PHE SEQRES 32 B 557 GLN GLY LEU PRO ALA ARG ILE CYS TRP VAL GLY LEU GLY SEQRES 33 B 557 LEU ARG ALA LYS LEU GLY LEU ALA PHE ASN GLU MET VAL SEQRES 34 B 557 ARG SER GLY GLU LEU SER ALA PRO VAL VAL ILE GLY ARG SEQRES 35 B 557 ASP HIS LEU ASP SER GLY SER VAL SER SER PRO ASN ARG SEQRES 36 B 557 GLU THR GLU ALA MET ARG ASP GLY SER ASP ALA VAL SER SEQRES 37 B 557 ASP TRP PRO LEU LEU ASN ALA LEU LEU ASN THR ALA GLY SEQRES 38 B 557 GLY ALA THR TRP VAL SER LEU HIS HIS GLY GLY GLY VAL SEQRES 39 B 557 GLY MET GLY PHE SER GLN HIS SER GLY MET VAL ILE VAL SEQRES 40 B 557 CYS ASP GLY THR ASP GLU ALA ALA GLU ARG ILE ALA ARG SEQRES 41 B 557 VAL LEU THR ASN ASP PRO GLY THR GLY VAL MET ARG HIS SEQRES 42 B 557 ALA ASP ALA GLY TYR ASP ILE ALA ILE ASP CYS ALA LYS SEQRES 43 B 557 GLU GLN GLY LEU ASP LEU PRO MET ILE THR GLY HET NAD A1555 44 HET NAD B1555 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 HOH *849(H2 O) HELIX 1 1 SER A 24 LEU A 38 1 15 HELIX 2 2 PRO A 46 GLU A 48 5 3 HELIX 3 3 ASN A 61 LEU A 75 1 15 HELIX 4 4 VAL A 109 ALA A 113 5 5 HELIX 5 5 ASN A 114 LYS A 124 1 11 HELIX 6 6 SER A 142 GLY A 162 1 21 HELIX 7 7 GLY A 180 ALA A 189 1 10 HELIX 8 8 GLN A 199 THR A 209 1 11 HELIX 9 9 ASP A 218 GLU A 232 1 15 HELIX 10 10 ASN A 243 GLY A 255 1 13 HELIX 11 11 THR A 280 GLU A 291 1 12 HELIX 12 12 GLU A 291 GLN A 316 1 26 HELIX 13 13 ASN A 326 GLU A 334 1 9 HELIX 14 14 ASN A 338 PHE A 342 5 5 HELIX 15 15 GLY A 344 TYR A 349 1 6 HELIX 16 16 ILE A 350 CYS A 355 1 6 HELIX 17 17 GLU A 369 ILE A 384 1 16 HELIX 18 18 ASP A 387 ILE A 401 1 15 HELIX 19 19 GLY A 416 SER A 431 1 16 HELIX 20 20 SER A 468 GLY A 482 1 15 HELIX 21 21 THR A 511 ALA A 536 1 26 HELIX 22 22 TYR A 538 GLN A 548 1 11 HELIX 23 23 SER B 24 ASN B 37 1 14 HELIX 24 24 PRO B 46 GLU B 48 5 3 HELIX 25 25 ASN B 61 LEU B 75 1 15 HELIX 26 26 VAL B 109 ALA B 113 5 5 HELIX 27 27 ASN B 114 LYS B 124 1 11 HELIX 28 28 SER B 142 TYR B 161 1 20 HELIX 29 29 GLY B 180 ALA B 189 1 10 HELIX 30 30 GLN B 199 THR B 209 1 11 HELIX 31 31 ASP B 218 GLY B 233 1 16 HELIX 32 32 ASN B 243 ARG B 254 1 12 HELIX 33 33 ASP B 269 TYR B 274 1 6 HELIX 34 34 THR B 280 GLU B 291 1 12 HELIX 35 35 GLU B 291 GLN B 316 1 26 HELIX 36 36 ASN B 326 GLU B 334 1 9 HELIX 37 37 ASN B 338 PHE B 342 5 5 HELIX 38 38 GLY B 344 TYR B 349 1 6 HELIX 39 39 ILE B 350 CYS B 355 1 6 HELIX 40 40 GLU B 369 ILE B 384 1 16 HELIX 41 41 ASP B 387 ILE B 401 1 15 HELIX 42 42 GLY B 416 SER B 431 1 16 HELIX 43 43 SER B 468 GLY B 482 1 15 HELIX 44 44 THR B 511 ALA B 536 1 26 HELIX 45 45 TYR B 538 GLY B 549 1 12 SHEET 1 AA 2 VAL A 50 TYR A 52 0 SHEET 2 AA 2 GLY A 56 ARG A 57 -1 O GLY A 56 N VAL A 51 SHEET 1 AB 8 LYS A 87 LYS A 93 0 SHEET 2 AB 8 GLU A 79 GLN A 84 -1 O THR A 80 N PHE A 92 SHEET 3 AB 8 VAL A 101 ASN A 105 1 O LEU A 102 N VAL A 83 SHEET 4 AB 8 TRP A 485 HIS A 490 1 O VAL A 486 N ILE A 103 SHEET 5 AB 8 GLN A 500 CYS A 508 -1 O HIS A 501 N HIS A 489 SHEET 6 AB 8 VAL A 438 ARG A 442 -1 O VAL A 438 N CYS A 508 SHEET 7 AB 8 PHE A 361 ALA A 365 -1 O ARG A 362 N GLY A 441 SHEET 8 AB 8 ALA A 408 ILE A 410 -1 O ARG A 409 N TRP A 363 SHEET 1 AC 6 LYS A 87 LYS A 93 0 SHEET 2 AC 6 GLU A 79 GLN A 84 -1 O THR A 80 N PHE A 92 SHEET 3 AC 6 VAL A 101 ASN A 105 1 O LEU A 102 N VAL A 83 SHEET 4 AC 6 TRP A 485 HIS A 490 1 O VAL A 486 N ILE A 103 SHEET 5 AC 6 GLN A 500 CYS A 508 -1 O HIS A 501 N HIS A 489 SHEET 6 AC 6 VAL A 450 SER A 451 -1 O SER A 451 N GLN A 500 SHEET 1 AD 5 GLU A 214 GLN A 215 0 SHEET 2 AD 5 SER A 237 HIS A 241 1 O SER A 237 N GLU A 214 SHEET 3 AD 5 CYS A 192 GLU A 197 1 O SER A 193 N ILE A 238 SHEET 4 AD 5 TRP A 169 ALA A 173 1 O VAL A 170 N LEU A 194 SHEET 5 AD 5 MET A 260 VAL A 261 1 O MET A 260 N LEU A 171 SHEET 1 BA 2 VAL B 50 TYR B 52 0 SHEET 2 BA 2 GLY B 56 ARG B 57 -1 O GLY B 56 N VAL B 51 SHEET 1 BB 8 LYS B 87 LYS B 93 0 SHEET 2 BB 8 GLU B 79 GLN B 84 -1 O THR B 80 N PHE B 92 SHEET 3 BB 8 VAL B 101 ASN B 105 1 O LEU B 102 N VAL B 83 SHEET 4 BB 8 TRP B 485 HIS B 490 1 O VAL B 486 N ILE B 103 SHEET 5 BB 8 GLN B 500 CYS B 508 -1 O HIS B 501 N HIS B 489 SHEET 6 BB 8 VAL B 438 ARG B 442 -1 O VAL B 438 N CYS B 508 SHEET 7 BB 8 PHE B 361 ALA B 365 -1 O ARG B 362 N GLY B 441 SHEET 8 BB 8 ALA B 408 ILE B 410 -1 O ARG B 409 N TRP B 363 SHEET 1 BC 6 LYS B 87 LYS B 93 0 SHEET 2 BC 6 GLU B 79 GLN B 84 -1 O THR B 80 N PHE B 92 SHEET 3 BC 6 VAL B 101 ASN B 105 1 O LEU B 102 N VAL B 83 SHEET 4 BC 6 TRP B 485 HIS B 490 1 O VAL B 486 N ILE B 103 SHEET 5 BC 6 GLN B 500 CYS B 508 -1 O HIS B 501 N HIS B 489 SHEET 6 BC 6 VAL B 450 SER B 451 -1 O SER B 451 N GLN B 500 SHEET 1 BD 5 GLU B 214 GLN B 215 0 SHEET 2 BD 5 SER B 237 HIS B 241 1 O SER B 237 N GLU B 214 SHEET 3 BD 5 CYS B 192 GLU B 197 1 O SER B 193 N ILE B 238 SHEET 4 BD 5 TRP B 169 ALA B 173 1 O VAL B 170 N LEU B 194 SHEET 5 BD 5 MET B 260 VAL B 261 1 O MET B 260 N LEU B 171 SITE 1 AC1 35 GLU A 44 TYR A 52 GLY A 53 GLY A 54 SITE 2 AC1 35 GLN A 131 ILE A 145 GLY A 176 GLY A 177 SITE 3 AC1 35 MET A 178 GLY A 179 ILE A 196 GLU A 197 SITE 4 AC1 35 SER A 198 GLN A 199 ARG A 202 GLY A 242 SITE 5 AC1 35 ASN A 243 ALA A 244 GLN A 264 THR A 265 SITE 6 AC1 35 SER A 266 HIS A 268 GLY A 273 TYR A 274 SITE 7 AC1 35 LEU A 275 TYR A 323 ASN A 325 PHE A 345 SITE 8 AC1 35 LEU A 445 ARG A 455 GLY A 493 HOH A2043 SITE 9 AC1 35 HOH A2441 HOH A2442 HOH A2443 SITE 1 AC2 35 GLU B 44 TYR B 52 GLY B 53 GLY B 54 SITE 2 AC2 35 GLN B 131 ILE B 145 GLY B 176 GLY B 177 SITE 3 AC2 35 MET B 178 GLY B 179 GLU B 197 SER B 198 SITE 4 AC2 35 GLN B 199 ARG B 202 GLY B 242 ASN B 243 SITE 5 AC2 35 ALA B 244 GLN B 264 THR B 265 SER B 266 SITE 6 AC2 35 HIS B 268 GLY B 273 TYR B 274 LEU B 275 SITE 7 AC2 35 TYR B 323 ASN B 325 PHE B 345 LEU B 445 SITE 8 AC2 35 ARG B 455 GLY B 493 HOH B2042 HOH B2337 SITE 9 AC2 35 HOH B2404 HOH B2405 HOH B2406 CRYST1 111.430 71.622 129.120 90.00 98.99 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008974 0.000000 0.001420 0.00000 SCALE2 0.000000 0.013962 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007841 0.00000 MTRIX1 1 -0.412750 -0.902950 -0.119690 41.12912 1 MTRIX2 1 -0.904320 0.390540 0.172290 34.95136 1 MTRIX3 1 -0.108820 0.179350 -0.977750 -66.13895 1