HEADER VIRAL PROTEIN 24-FEB-04 1UXB TITLE ADENOVIRUS AD19P FIBRE HEAD IN COMPLEX WITH SIALYL-LACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: HEAD DOMAIN, RESIDUES 172-365; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: ONLY THE KNOB DOMAIN, AFTER TEV CLEAVAGE OF A HIS- COMPND 8 TAGGED PROTEIN CONSTRUCT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS TYPE 19; SOURCE 3 ORGANISM_TAXID: 28278; SOURCE 4 STRAIN: P; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS VIRAL PROTEIN, ADENOVIRUS, AD19P, FIBRE, RECEPTOR, SIALIC ACID, KEYWDS 2 NEURAMINIC ACID, CD46, DAF, CONJUNCTIVITIS EXPDTA X-RAY DIFFRACTION AUTHOR W.P.BURMEISTER,D.GUILLIGAY,S.CUSACK,G.WADELL,N.ARNBERG REVDAT 4 13-DEC-23 1UXB 1 HETSYN REVDAT 3 29-JUL-20 1UXB 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 24-FEB-09 1UXB 1 VERSN REVDAT 1 01-JUL-04 1UXB 0 JRNL AUTH W.P.BURMEISTER,D.GUILLIGAY,S.CUSACK,G.WADELL,N.ARNBERG JRNL TITL CRYSTAL STRUCTURE OF SPECIES D ADENOVIRUS FIBER KNOBS AND JRNL TITL 2 THEIR SIALIC ACID BINDING SITES JRNL REF J.VIROL. V. 78 7727 2004 JRNL REFN ISSN 0022-538X JRNL PMID 15220447 JRNL DOI 10.1128/JVI.78.14.7727-7736.2004 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 61498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3078 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.91 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5558 REMARK 3 BIN R VALUE (WORKING SET) : 0.2678 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 294 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4349 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 111 REMARK 3 SOLVENT ATOMS : 587 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99700 REMARK 3 B22 (A**2) : -1.07700 REMARK 3 B33 (A**2) : 2.07400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.63900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 1.894 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.71 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.317 ; 3.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.035 ; 4.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.407 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.949 ; 4.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 41.96 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ELECTRON DENSITY THAT IS ASSOCIATED REMARK 3 WITH THE ACETATE IONS IS POORLY DEFINED REMARK 4 REMARK 4 1UXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1290014635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 74.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.340 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.2063 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1UXA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 24 % PEG8000, 50 MM ZINC REMARK 280 ACETATE, 100 MM HEPES. PROTEIN: 30 MM TRIS-HCL, PH 7.5, 150 MM REMARK 280 NACL., PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.35000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUTATION IN CHAINS A, B, C, TYR 173 TO ALA 173 REMARK 400 ENGINEERED MUTATION IN CHAINS A, B, C, LEU 174 TO MET 174 REMARK 400 ENGINEERED MUTATION IN CHAINS A, B, C, VAL 175 TO GLY 175 REMARK 400 ENGINEERED MUTATION IN CHAINS A, B, C, ALA 176 TO SER 176 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 172 REMARK 465 ALA A 173 REMARK 465 MET A 174 REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 TRP A 177 REMARK 465 ASN A 178 REMARK 465 PRO A 179 REMARK 465 LYS A 180 REMARK 465 TYR A 181 REMARK 465 GLY B 172 REMARK 465 ALA B 173 REMARK 465 MET B 174 REMARK 465 GLY B 175 REMARK 465 SER B 176 REMARK 465 TRP B 177 REMARK 465 ASN B 178 REMARK 465 PRO B 179 REMARK 465 LYS B 180 REMARK 465 TYR B 181 REMARK 465 ASP B 182 REMARK 465 GLY C 172 REMARK 465 ALA C 173 REMARK 465 MET C 174 REMARK 465 GLY C 175 REMARK 465 SER C 176 REMARK 465 TRP C 177 REMARK 465 ASN C 178 REMARK 465 PRO C 179 REMARK 465 LYS C 180 REMARK 465 TYR C 181 REMARK 465 ASP C 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 253 O HOH A 2051 0.66 REMARK 500 O HOH A 2031 O HOH A 2032 0.83 REMARK 500 O1B SIA F 2 O HOH C 2217 1.24 REMARK 500 O HOH A 2022 O HOH A 2030 1.29 REMARK 500 OE2 GLU C 351 O HOH C 2202 1.37 REMARK 500 CD1 LEU A 257 O HOH A 2138 1.48 REMARK 500 O ACT A 1369 O HOH A 2179 1.58 REMARK 500 O6 SIA F 2 O HOH C 2217 1.65 REMARK 500 O HOH C 2228 O HOH C 2230 1.73 REMARK 500 C6 GAL F 1 O HOH C 2226 1.76 REMARK 500 C1 SIA F 2 O HOH C 2217 1.77 REMARK 500 OE2 GLU B 351 O HOH B 2175 1.81 REMARK 500 CG ASN A 253 O HOH A 2051 1.83 REMARK 500 OXT ACT A 1370 O HOH A 2179 1.88 REMARK 500 O4 GAL F 1 O HOH C 2226 1.92 REMARK 500 C ACT A 1370 O HOH A 2179 1.96 REMARK 500 OD1 ASN B 349 O HOH B 2151 1.97 REMARK 500 C2 SIA F 2 O HOH C 2217 2.03 REMARK 500 O HOH A 2140 O HOH A 2141 2.06 REMARK 500 O ACT A 1370 O HOH A 2179 2.07 REMARK 500 OE2 GLU C 334 O HOH C 2179 2.08 REMARK 500 CG1 VAL A 255 O HOH A 2047 2.10 REMARK 500 O HOH C 2138 O HOH C 2228 2.10 REMARK 500 NE2 HIS B 231 O HOH B 2175 2.11 REMARK 500 ND2 ASN B 298 O HOH B 2078 2.12 REMARK 500 O SER B 299 O HOH B 2085 2.13 REMARK 500 OD1 ASN C 275 O HOH C 2091 2.16 REMARK 500 OG1 THR B 211 O HOH B 2017 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 236 OXT ACT C 1369 2757 1.58 REMARK 500 ND2 ASN A 259 O HOH B 2078 2647 2.13 REMARK 500 CB LEU A 257 O HOH B 2078 2647 2.14 REMARK 500 NZ LYS A 236 O HOH C 2202 2757 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 189 160.04 79.47 REMARK 500 CYS A 213 66.50 -117.34 REMARK 500 SER A 274 -144.26 -140.78 REMARK 500 THR A 278 -58.81 -146.88 REMARK 500 ALA A 279 118.42 171.17 REMARK 500 ALA A 283 27.82 -162.69 REMARK 500 THR B 189 158.27 76.14 REMARK 500 CYS B 213 65.09 -116.74 REMARK 500 SER B 274 -153.65 -130.14 REMARK 500 ALA B 283 38.20 -146.88 REMARK 500 PRO C 190 30.91 -81.31 REMARK 500 CYS C 213 67.32 -115.60 REMARK 500 SER C 274 -159.39 -131.56 REMARK 500 ALA C 283 38.86 -151.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2046 DISTANCE = 6.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1367 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 GLU A 351 OE2 130.9 REMARK 620 3 ACT A1369 O 110.0 118.8 REMARK 620 4 ACT A1370 OXT 94.3 89.1 79.7 REMARK 620 5 HOH A2177 O 101.9 82.1 92.4 163.6 REMARK 620 6 HOH A2179 O 81.8 130.8 44.2 47.5 132.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1367 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 231 NE2 REMARK 620 2 GLU B 351 OE2 112.3 REMARK 620 3 HOH B2173 O 83.9 163.4 REMARK 620 4 HOH B2174 O 104.0 86.4 93.4 REMARK 620 5 HOH B2175 O 66.9 54.3 135.5 125.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1366 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 231 NE2 REMARK 620 2 ACT C1369 O 108.6 REMARK 620 3 ACT C1369 OXT 102.4 77.6 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UXA RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF ADENOVIRUS AD37 FIBRE HEAD IN COMPLEX WITH REMARK 900 SIALYL-LACTOSE REMARK 900 RELATED ID: 1UXE RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF ADENOVIRUS AD37 FIBRE HEAD REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FIRST FIVE RESIDUES HAVE BEEN CHANGED IN ORDER REMARK 999 TO INTRODUCE THE TEV CLEAVAGE SITE DBREF 1UXB A 172 365 UNP Q64822 Q64822 172 365 DBREF 1UXB B 172 365 UNP Q64822 Q64822 172 365 DBREF 1UXB C 172 365 UNP Q64822 Q64822 172 365 SEQADV 1UXB ALA A 173 UNP Q64822 TYR 173 ENGINEERED MUTATION SEQADV 1UXB ALA B 173 UNP Q64822 TYR 173 ENGINEERED MUTATION SEQADV 1UXB ALA C 173 UNP Q64822 TYR 173 ENGINEERED MUTATION SEQADV 1UXB MET A 174 UNP Q64822 LEU 174 ENGINEERED MUTATION SEQADV 1UXB MET B 174 UNP Q64822 LEU 174 ENGINEERED MUTATION SEQADV 1UXB MET C 174 UNP Q64822 LEU 174 ENGINEERED MUTATION SEQADV 1UXB GLY A 175 UNP Q64822 VAL 175 ENGINEERED MUTATION SEQADV 1UXB GLY B 175 UNP Q64822 VAL 175 ENGINEERED MUTATION SEQADV 1UXB GLY C 175 UNP Q64822 VAL 175 ENGINEERED MUTATION SEQADV 1UXB SER A 176 UNP Q64822 ALA 176 ENGINEERED MUTATION SEQADV 1UXB SER B 176 UNP Q64822 ALA 176 ENGINEERED MUTATION SEQADV 1UXB SER C 176 UNP Q64822 ALA 176 ENGINEERED MUTATION SEQRES 1 A 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 A 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 A 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 A 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 A 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 A 194 THR ASN PRO GLU ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 A 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 A 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 A 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 A 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 A 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 A 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 A 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASP SEQRES 14 A 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 A 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU SEQRES 1 B 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 B 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 B 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 B 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 B 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 B 194 THR ASN PRO GLU ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 B 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 B 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 B 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 B 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 B 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 B 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 B 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASP SEQRES 14 B 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 B 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU SEQRES 1 C 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 C 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 C 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 C 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 C 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 C 194 THR ASN PRO GLU ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 C 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 C 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 C 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 C 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 C 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 C 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 C 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASP SEQRES 14 C 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 C 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU HET GAL D 1 12 HET SIA D 2 20 HET GAL E 1 12 HET SIA E 2 20 HET GAL F 1 12 HET SIA F 2 20 HET ZN A1367 1 HET ACT A1369 4 HET ACT A1370 4 HET ZN B1367 1 HET ZN C1366 1 HET ACT C1369 4 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 4 GAL 3(C6 H12 O6) FORMUL 4 SIA 3(C11 H19 N O9) FORMUL 7 ZN 3(ZN 2+) FORMUL 8 ACT 3(C2 H3 O2 1-) FORMUL 13 HOH *587(H2 O) HELIX 1 1 GLY A 263 TRP A 267 5 5 HELIX 2 2 ALA A 283 MET A 287 5 5 HELIX 3 3 TYR A 302 ARG A 304 5 3 HELIX 4 4 GLY A 314 LYS A 316 5 3 HELIX 5 5 ALA B 283 MET B 287 5 5 HELIX 6 6 TYR B 302 ARG B 304 5 3 HELIX 7 7 GLY B 314 LYS B 316 5 3 HELIX 8 8 GLY C 263 ALA C 265 5 3 HELIX 9 9 ALA C 283 MET C 287 5 5 HELIX 10 10 TYR C 302 ARG C 304 5 3 HELIX 11 11 GLY C 314 LYS C 316 5 3 SHEET 1 AA 6 SER A 274 ASN A 275 0 SHEET 2 AA 6 ASN A 268 SER A 271 -1 O SER A 271 N SER A 274 SHEET 3 AA 6 THR A 185 TRP A 187 -1 O THR A 185 N ARG A 270 SHEET 4 AA 6 SER A 204 CYS A 213 -1 O LEU A 210 N LEU A 186 SHEET 5 AA 6 GLN A 216 VAL A 225 -1 O GLN A 216 N CYS A 213 SHEET 6 AA 6 PHE A 357 ILE A 362 -1 O PHE A 357 N VAL A 221 SHEET 1 AB 2 ILE A 232 ASN A 234 0 SHEET 2 AB 2 GLU A 348 GLU A 351 -1 N ASN A 349 O ILE A 233 SHEET 1 AC 4 SER A 243 PHE A 250 0 SHEET 2 AC 4 TYR A 335 SER A 342 -1 O TYR A 335 N PHE A 250 SHEET 3 AC 4 PRO A 320 PHE A 327 -1 O VAL A 322 N SER A 342 SHEET 4 AC 4 ILE A 306 TYR A 312 -1 O VAL A 307 N THR A 325 SHEET 1 BA 6 SER B 274 ASN B 275 0 SHEET 2 BA 6 ASN B 268 SER B 271 -1 O SER B 271 N SER B 274 SHEET 3 BA 6 THR B 185 TRP B 187 -1 O THR B 185 N ARG B 270 SHEET 4 BA 6 SER B 204 CYS B 213 -1 O LEU B 210 N LEU B 186 SHEET 5 BA 6 GLN B 216 VAL B 225 -1 O GLN B 216 N CYS B 213 SHEET 6 BA 6 PHE B 357 ILE B 362 -1 O PHE B 357 N VAL B 221 SHEET 1 BB 2 ILE B 232 ASN B 234 0 SHEET 2 BB 2 GLU B 348 GLU B 351 -1 N ASN B 349 O ILE B 233 SHEET 1 BC 4 SER B 243 PHE B 250 0 SHEET 2 BC 4 TYR B 335 SER B 342 -1 O TYR B 335 N PHE B 250 SHEET 3 BC 4 PRO B 320 PHE B 327 -1 O VAL B 322 N SER B 342 SHEET 4 BC 4 ILE B 306 TYR B 312 -1 O VAL B 307 N THR B 325 SHEET 1 CA 6 SER C 274 ASN C 275 0 SHEET 2 CA 6 TRP C 267 SER C 271 -1 O SER C 271 N SER C 274 SHEET 3 CA 6 THR C 185 THR C 188 -1 O THR C 185 N ARG C 270 SHEET 4 CA 6 SER C 204 CYS C 213 -1 O LEU C 208 N THR C 188 SHEET 5 CA 6 GLN C 216 VAL C 225 -1 O GLN C 216 N CYS C 213 SHEET 6 CA 6 PHE C 357 ILE C 362 -1 O PHE C 357 N VAL C 221 SHEET 1 CB 2 ILE C 232 ASN C 234 0 SHEET 2 CB 2 GLU C 348 GLU C 351 -1 N ASN C 349 O ILE C 233 SHEET 1 CC 4 SER C 243 PHE C 250 0 SHEET 2 CC 4 TYR C 335 SER C 342 -1 O TYR C 335 N PHE C 250 SHEET 3 CC 4 PRO C 320 PHE C 327 -1 O VAL C 322 N SER C 342 SHEET 4 CC 4 ILE C 306 TYR C 312 -1 O VAL C 307 N THR C 325 LINK O3 GAL D 1 C2 SIA D 2 1555 1555 1.39 LINK O3 GAL E 1 C2 SIA E 2 1555 1555 1.38 LINK O6 GAL F 1 C2 SIA F 2 1555 1555 1.37 LINK NE2 HIS A 231 ZN ZN A1367 1555 1555 1.92 LINK OE2 GLU A 351 ZN ZN A1367 1555 1555 1.88 LINK ZN ZN A1367 O ACT A1369 1555 1555 2.14 LINK ZN ZN A1367 OXT ACT A1370 1555 1555 2.50 LINK ZN ZN A1367 O HOH A2177 1555 1555 2.32 LINK ZN ZN A1367 O HOH A2179 1555 1555 2.07 LINK NE2 HIS B 231 ZN ZN B1367 1555 1555 2.16 LINK OE2 GLU B 351 ZN ZN B1367 1555 1555 2.21 LINK ZN ZN B1367 O HOH B2173 1555 1555 2.49 LINK ZN ZN B1367 O HOH B2174 1555 1555 2.18 LINK ZN ZN B1367 O HOH B2175 1555 1555 1.55 LINK NE2 HIS C 231 ZN ZN C1366 1555 1555 2.05 LINK ZN ZN C1366 O ACT C1369 1555 1555 2.03 LINK ZN ZN C1366 OXT ACT C1369 1555 1555 1.81 CRYST1 60.700 68.700 74.700 90.00 94.90 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016477 0.000000 0.001418 0.00000 SCALE2 0.000000 0.014558 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013429 0.00000 MTRIX1 1 -0.091600 0.949400 -0.300500 29.11900 1 MTRIX2 1 0.210300 0.313400 0.926100 -36.85200 1 MTRIX3 1 0.973300 0.021600 -0.228400 27.19800 1 MTRIX1 2 -0.100000 0.196500 0.975400 15.21200 1 MTRIX2 2 0.946300 0.321500 0.032200 -17.78100 1 MTRIX3 2 -0.307300 0.926300 -0.218100 48.27500 1