HEADER CARBOHYDRATE BINDING MODULE 03-MAR-04 1UYZ TITLE CARBOHYDRATE BINDING MODULE (CBM6CM-2) FROM CELLVIBRIO MIXTUS TITLE 2 LICHENASE 5A IN COMPLEX WITH XYLOTETRAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULASE B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CARBOHYDRATE BINDING MODULE, RESIDUES 493-622; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO MIXTUS; SOURCE 3 ORGANISM_TAXID: 39650; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBOHYDRATE BINDING MODULE, CBM6, MIXED BETA1, 3-1, 4 LINKED GLUCAN, KEYWDS 2 XYLOTETRAOSE EXPDTA X-RAY DIFFRACTION AUTHOR M.CZJZEK,V.M.R.PIRES,J.HENSHAW,J.A.M.PRATES,D.BOLAM,B.HENRISSAT, AUTHOR 2 H.J.GILBERT REVDAT 5 08-MAY-24 1UYZ 1 HETSYN LINK REVDAT 4 29-JUL-20 1UYZ 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 24-FEB-09 1UYZ 1 VERSN REVDAT 2 13-MAY-04 1UYZ 1 JRNL REVDAT 1 11-MAR-04 1UYZ 0 JRNL AUTH V.M.R.PIRES,J.HENSHAW,J.A.M.PRATES,D.BOLAM,L.M.A.FERREIRA, JRNL AUTH 2 C.M.G.A.FONTES,B.HENRISSAT,A.PLANAS,H.J.GILBERT,M.CZJZEK JRNL TITL THE CRYSTAL STRUCTURE OF THE FAMILY 6 CARBOHYDRATE BINDING JRNL TITL 2 MODULE FROM CELLVIBRIO MIXTUS ENDOGLUCANASE 5A IN COMPLEX JRNL TITL 3 WITH OLIGOSACCHARIDES REVEALS TWO DISTINCT BINDING SITES JRNL TITL 4 WITH DIFFERENT LIGAND SPECIFICITIES JRNL REF J.BIOL.CHEM. V. 279 21560 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15010454 JRNL DOI 10.1074/JBC.M401599200 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2497 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3432 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1944 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 386 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.984 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2047 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1703 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2794 ; 1.166 ; 1.916 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3971 ; 0.721 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 260 ; 6.392 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 312 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2308 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 390 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 329 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2062 ; 0.261 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1181 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 262 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 21 ; 0.105 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.144 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.307 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1276 ; 0.648 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2034 ; 1.204 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 771 ; 1.844 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 760 ; 2.944 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1UYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1290014721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49390 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 27.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.23800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: FFT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% PEG 6000, 2.0 M NACL, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.00500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.62000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.69700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.62000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.00500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.69700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 99 O HOH A 2151 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 10 35.15 -91.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1132 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 7 OE1 REMARK 620 2 GLU A 9 OE1 103.8 REMARK 620 3 GLU A 9 OE2 90.6 50.9 REMARK 620 4 LYS A 29 O 166.6 80.0 81.9 REMARK 620 5 ASN A 123 O 82.1 80.4 127.4 111.3 REMARK 620 6 ASN A 123 OD1 101.4 140.3 157.8 82.5 73.2 REMARK 620 7 HOH A2074 O 81.4 124.3 73.9 85.8 153.1 89.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1135 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 16 O REMARK 620 2 TYR A 33 O 83.4 REMARK 620 3 ASP A 35 OD2 168.2 84.9 REMARK 620 4 ASP A 38 OD2 87.6 87.3 93.6 REMARK 620 5 HOH A2083 O 102.8 100.2 77.5 167.7 REMARK 620 6 HOH B2009 O 92.1 165.7 99.7 79.0 94.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1134 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2015 O REMARK 620 2 GLY B 16 O 95.5 REMARK 620 3 TYR B 33 O 168.7 83.8 REMARK 620 4 ASP B 35 OD2 92.8 171.6 87.8 REMARK 620 5 ASP B 38 OD2 79.7 85.9 88.9 94.2 REMARK 620 6 HOH B2070 O 92.2 101.3 99.0 79.8 169.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1132 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 7 OE1 REMARK 620 2 GLU B 9 OE1 101.4 REMARK 620 3 GLU B 9 OE2 88.6 50.0 REMARK 620 4 LYS B 29 O 167.6 80.8 83.5 REMARK 620 5 ASN B 123 O 83.0 82.5 128.9 109.4 REMARK 620 6 ASN B 123 OD1 102.4 143.1 157.2 82.0 72.9 REMARK 620 7 HOH B2062 O 80.8 121.4 71.8 87.6 153.4 90.0 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UXZ RELATED DB: PDB REMARK 900 CARBOHYDRATE BINDING MODULE (CBM6CM-2) FROM CELLVIBRIO MIXTUS REMARK 900 LICHENASE 5A REMARK 900 RELATED ID: 1UY0 RELATED DB: PDB REMARK 900 CARBOHYDRATE BINDING MODULE (CBM6CM-2) FROM CELLVIBRIO MIXTUS REMARK 900 LICHENASE 5A IN COMPLEX WITH GLC-1,3-GLC-1,4-GLC-1,3-GLC REMARK 900 RELATED ID: 1UYX RELATED DB: PDB REMARK 900 CARBOHYDRATE BINDING MODULE (CBM6CM-2) FROM CELLVIBRIO MIXTUS REMARK 900 LICHENASE 5A IN COMPLEX WITH CELLOBIOSE REMARK 900 RELATED ID: 1UYY RELATED DB: PDB REMARK 900 CARBOHYDRATE BINDING MODULE (CBM6CM-2) FROM CELLVIBRIO MIXTUS REMARK 900 LICHENASE 5A IN COMPLEX WITH CELLOTRIOSE DBREF 1UYZ A 1 1 PDB 1UYZ 1UYZ 1 1 DBREF 1UYZ A 2 131 UNP O07653 O07653 493 622 DBREF 1UYZ B 1 1 PDB 1UYZ 1UYZ 1 1 DBREF 1UYZ B 2 131 UNP O07653 O07653 493 622 SEQRES 1 A 131 MET VAL ILE ALA THR ILE GLN ALA GLU ASP HIS SER GLN SEQRES 2 A 131 GLN SER GLY THR GLN GLN GLU THR THR THR ASP THR GLY SEQRES 3 A 131 GLY GLY LYS ASN VAL GLY TYR ILE ASP ALA GLY ASP TRP SEQRES 4 A 131 LEU SER TYR ALA GLY THR PRO VAL ASN ILE PRO SER SER SEQRES 5 A 131 GLY SER TYR LEU ILE GLU TYR ARG VAL ALA SER GLN ASN SEQRES 6 A 131 GLY GLY GLY SER LEU THR PHE GLU GLU ALA GLY GLY ALA SEQRES 7 A 131 PRO VAL HIS GLY THR ILE ALA ILE PRO ALA THR GLY GLY SEQRES 8 A 131 TRP GLN THR TRP THR THR ILE GLN HIS THR VAL ASN LEU SEQRES 9 A 131 SER ALA GLY SER HIS GLN PHE GLY ILE LYS ALA ASN ALA SEQRES 10 A 131 GLY GLY TRP ASN LEU ASN TRP ILE ARG ILE ASN LYS THR SEQRES 11 A 131 HIS SEQRES 1 B 131 MET VAL ILE ALA THR ILE GLN ALA GLU ASP HIS SER GLN SEQRES 2 B 131 GLN SER GLY THR GLN GLN GLU THR THR THR ASP THR GLY SEQRES 3 B 131 GLY GLY LYS ASN VAL GLY TYR ILE ASP ALA GLY ASP TRP SEQRES 4 B 131 LEU SER TYR ALA GLY THR PRO VAL ASN ILE PRO SER SER SEQRES 5 B 131 GLY SER TYR LEU ILE GLU TYR ARG VAL ALA SER GLN ASN SEQRES 6 B 131 GLY GLY GLY SER LEU THR PHE GLU GLU ALA GLY GLY ALA SEQRES 7 B 131 PRO VAL HIS GLY THR ILE ALA ILE PRO ALA THR GLY GLY SEQRES 8 B 131 TRP GLN THR TRP THR THR ILE GLN HIS THR VAL ASN LEU SEQRES 9 B 131 SER ALA GLY SER HIS GLN PHE GLY ILE LYS ALA ASN ALA SEQRES 10 B 131 GLY GLY TRP ASN LEU ASN TRP ILE ARG ILE ASN LYS THR SEQRES 11 B 131 HIS HET XYP C 1 10 HET XYP C 2 9 HET XYP C 3 9 HET XYP C 4 9 HET CA A1132 1 HET NA A1133 1 HET NA A1134 1 HET CA A1135 1 HET GOL A1136 6 HET CA B1132 1 HET NA B1133 1 HET CA B1134 1 HET GOL B1135 6 HET GOL B1136 6 HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 XYP 4(C5 H10 O5) FORMUL 4 CA 4(CA 2+) FORMUL 5 NA 3(NA 1+) FORMUL 8 GOL 3(C3 H8 O3) FORMUL 14 HOH *386(H2 O) HELIX 1 1 GLU B 9 HIS B 11 5 3 SHEET 1 AA 4 VAL A 2 GLN A 7 0 SHEET 2 AA 4 ASN A 121 LYS A 129 -1 O ILE A 125 N ILE A 6 SHEET 3 AA 4 GLY A 53 ALA A 62 -1 O LEU A 56 N ASN A 128 SHEET 4 AA 4 THR A 96 LEU A 104 -1 O THR A 96 N VAL A 61 SHEET 1 AB 5 GLN A 13 SER A 15 0 SHEET 2 AB 5 TRP A 39 SER A 41 -1 O TRP A 39 N SER A 15 SHEET 3 AB 5 PHE A 111 ALA A 117 -1 O ILE A 113 N LEU A 40 SHEET 4 AB 5 GLY A 68 GLU A 74 -1 O SER A 69 N ASN A 116 SHEET 5 AB 5 VAL A 80 ILE A 86 -1 N HIS A 81 O PHE A 72 SHEET 1 AC 2 GLN A 18 THR A 21 0 SHEET 2 AC 2 LYS A 29 GLY A 32 -1 O ASN A 30 N GLU A 20 SHEET 1 AD 2 VAL A 47 ILE A 49 0 SHEET 2 AD 2 GLY A 107 HIS A 109 -1 O GLY A 107 N ILE A 49 SHEET 1 BA 4 VAL B 2 GLN B 7 0 SHEET 2 BA 4 ASN B 121 LYS B 129 -1 O ILE B 125 N ILE B 6 SHEET 3 BA 4 GLY B 53 ALA B 62 -1 O LEU B 56 N ASN B 128 SHEET 4 BA 4 TRP B 95 LEU B 104 -1 O THR B 96 N VAL B 61 SHEET 1 BB 5 GLN B 13 SER B 15 0 SHEET 2 BB 5 TRP B 39 SER B 41 -1 O TRP B 39 N SER B 15 SHEET 3 BB 5 PHE B 111 ALA B 117 -1 O ILE B 113 N LEU B 40 SHEET 4 BB 5 GLY B 68 GLU B 74 -1 O SER B 69 N ASN B 116 SHEET 5 BB 5 VAL B 80 ILE B 86 -1 N HIS B 81 O PHE B 72 SHEET 1 BC 2 GLN B 18 THR B 21 0 SHEET 2 BC 2 LYS B 29 GLY B 32 -1 O ASN B 30 N GLU B 20 SHEET 1 BD 2 VAL B 47 ILE B 49 0 SHEET 2 BD 2 GLY B 107 HIS B 109 -1 O GLY B 107 N ILE B 49 LINK O4 XYP C 1 C1 XYP C 2 1555 1555 1.44 LINK O4 XYP C 2 C1 XYP C 3 1555 1555 1.43 LINK O4 XYP C 3 C1 XYP C 4 1555 1555 1.43 LINK OE1 GLN A 7 CA CA A1132 1555 1555 2.26 LINK OE1 GLU A 9 CA CA A1132 1555 1555 2.42 LINK OE2 GLU A 9 CA CA A1132 1555 1555 2.65 LINK O GLY A 16 CA CA A1135 1555 1555 2.26 LINK O LYS A 29 CA CA A1132 1555 1555 2.30 LINK O TYR A 33 CA CA A1135 1555 1555 2.30 LINK OD2 ASP A 35 CA CA A1135 1555 1555 2.32 LINK OD2 ASP A 38 CA CA A1135 1555 1555 2.29 LINK O ASN A 123 CA CA A1132 1555 1555 2.52 LINK OD1 ASN A 123 CA CA A1132 1555 1555 2.29 LINK CA CA A1132 O HOH A2074 1555 1555 2.38 LINK CA CA A1135 O HOH A2083 1555 1555 2.37 LINK CA CA A1135 O HOH B2009 1555 2555 2.40 LINK O HOH A2015 CA CA B1134 1555 1555 2.41 LINK OE1 GLN B 7 CA CA B1132 1555 1555 2.27 LINK OE1 GLU B 9 CA CA B1132 1555 1555 2.43 LINK OE2 GLU B 9 CA CA B1132 1555 1555 2.75 LINK O GLY B 16 CA CA B1134 1555 1555 2.31 LINK O LYS B 29 CA CA B1132 1555 1555 2.31 LINK O TYR B 33 CA CA B1134 1555 1555 2.33 LINK OD2 ASP B 35 CA CA B1134 1555 1555 2.34 LINK OD2 ASP B 38 CA CA B1134 1555 1555 2.35 LINK O ASN B 123 CA CA B1132 1555 1555 2.52 LINK OD1 ASN B 123 CA CA B1132 1555 1555 2.27 LINK CA CA B1132 O HOH B2062 1555 1555 2.36 LINK CA CA B1134 O HOH B2070 1555 1555 2.33 CISPEP 1 ALA A 78 PRO A 79 0 -4.92 CISPEP 2 ALA B 78 PRO B 79 0 -4.01 CRYST1 64.010 67.394 85.240 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015622 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011731 0.00000 MTRIX1 1 -0.085490 -0.995990 0.026220 83.88921 1 MTRIX2 1 0.996160 -0.085940 -0.016610 -11.37161 1 MTRIX3 1 0.018790 0.024700 0.999520 -22.91246 1