HEADER LECTIN 17-MAR-04 1UZV TITLE HIGH AFFINITY FUCOSE BINDING OF PSEUDOMONAS AERUGINOSA LECTIN II: 1.0 TITLE 2 A CRYSTAL STRUCTURE OF THE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSEUDOMONAS AERUGINOSA LECTIN II; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: HYPOTHETICAL PROTEIN PA3361 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 ATCC: 15692 KEYWDS LECTIN, FUCOSE, CALCIUM EXPDTA X-RAY DIFFRACTION AUTHOR E.MITCHELL,C.D.SABIN,L.SNAJDROVA,M.BUDOVA,S.PERRET,C.GAUTIER, AUTHOR 2 N.GILBOA-GARBER,J.KOCA,M.WIMMEROVA,A.IMBERTY REVDAT 7 01-MAY-24 1UZV 1 HETSYN REVDAT 6 29-JUL-20 1UZV 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE REVDAT 5 22-MAY-19 1UZV 1 REMARK REVDAT 4 15-APR-15 1UZV 1 JRNL REMARK VERSN FORMUL REVDAT 3 24-FEB-09 1UZV 1 VERSN REVDAT 2 10-FEB-05 1UZV 1 JRNL REVDAT 1 08-DEC-04 1UZV 0 JRNL AUTH E.P.MITCHELL,C.SABIN,L.SNAJDROVA,M.POKORNA,S.PERRET, JRNL AUTH 2 C.GAUTIER,C.HOFR,N.GILBOA-GARBER,J.KOCA,M.WIMMEROVA, JRNL AUTH 3 A.IMBERTY JRNL TITL HIGH AFFINITY FUCOSE BINDING OF PSEUDOMONAS AERUGINOSA JRNL TITL 2 LECTIN PA-IIL: 1.0 A RESOLUTION CRYSTAL STRUCTURE OF THE JRNL TITL 3 COMPLEX COMBINED WITH THERMODYNAMICS AND COMPUTATIONAL JRNL TITL 4 CHEMISTRY APPROACHES. JRNL REF PROTEINS V. 58 735 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 15573375 JRNL DOI 10.1002/PROT.20330 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.MITCHELL,C.HOULES,D.SUDAKEVITZ,M.WIMMEROVA,C.GAUTIER, REMARK 1 AUTH 2 S.PEREZ,A.M.WU,N.GILBOA-GARBER,A.IMBERTY REMARK 1 TITL STRUCTURAL BASIS FOR OLIGOSACCHARIDE-MEDIATED ADHESION OF REMARK 1 TITL 2 PSEUDOMONAS AERUGINOSA IN THE LUNGS OF CYSTIC FIBROSIS REMARK 1 TITL 3 PATIENTS REMARK 1 REF NAT.STRUCT.BIOL. V. 9 918 2002 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 12415289 REMARK 1 DOI 10.1038/NSB865 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.115 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.135 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 4332 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 212499 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.111 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.130 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 3993 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 195817 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 682 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 4024.7 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 2991.6 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 27 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 35194 REMARK 3 NUMBER OF RESTRAINTS : 45801 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 ANGLE DISTANCES (A) : 0.029 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.034 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.089 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.098 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.102 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.006 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.035 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-2 REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INITIAL REFINEMENT WITH REFMAC5 AND REMARK 3 THEN SHELX-97 WITH ANISOTROPIC REFINEMENT USING ALL REFLECTIONS REMARK 3 (NO CUTOFF) REMARK 4 REMARK 4 1UZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1290014454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9326 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL DIAMOND REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 216831 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE, ACORN, SHELX REMARK 200 STARTING MODEL: PSEUDOMONAS AERUGINOSA LECTIN REMARK 200 REMARK 200 REMARK: MOLECULAR REPLACEMENT WAS USED TO DETERMINE CA ION REMARK 200 POSITIONS AND SUBSEQUENT AB INITIO PHASING. DATA WERE COLLECTED REMARK 200 IN TWO SECTIONS, ONE SWEEP FOR HIGH RESOLUTION DATA AND ANOTHER REMARK 200 FOR LOW RESOLUTION DATA. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS HCL 0.1M, PH8.5, 1.75 M AMMONIUM REMARK 280 SULFATE, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.41350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 46 O HOH B 2091 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 86 CD GLU C 86 OE1 0.097 REMARK 500 GLU C 86 CD GLU C 86 OE2 -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 72 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 13 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 13 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG D 13 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG D 13 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG D 13 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -44.74 -136.82 REMARK 500 GLU B 86 -37.02 -148.51 REMARK 500 ASN C 46 35.70 -141.08 REMARK 500 GLU C 86 -38.13 -154.05 REMARK 500 GLU D 86 -41.51 -143.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2036 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH D2055 DISTANCE = 6.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 998 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD1 144.7 REMARK 620 3 ASP A 101 OD2 154.2 46.4 REMARK 620 4 ASN A 103 OD1 87.3 71.2 76.0 REMARK 620 5 ASP A 104 OD1 82.7 69.3 115.6 88.0 REMARK 620 6 FUC A 999 O3 130.3 64.2 74.0 135.5 76.4 REMARK 620 7 FUC A 999 O4 76.4 129.6 113.8 158.6 103.2 65.6 REMARK 620 8 GLY B 114 O 78.8 125.5 80.7 86.4 160.9 119.6 77.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 997 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 53.5 REMARK 620 3 ASP A 99 OD1 86.5 83.3 REMARK 620 4 ASP A 101 OD1 78.8 131.4 85.1 REMARK 620 5 ASP A 104 OD1 116.8 130.2 145.9 76.3 REMARK 620 6 ASP A 104 OD2 83.1 79.3 162.6 106.5 51.3 REMARK 620 7 FUC A 999 O2 141.2 88.6 98.0 139.8 79.6 81.8 REMARK 620 8 FUC A 999 O3 149.8 144.7 76.0 75.3 71.8 119.1 66.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 998 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 114 O REMARK 620 2 ASN B 21 O 78.8 REMARK 620 3 ASP B 101 OD1 125.5 143.5 REMARK 620 4 ASP B 101 OD2 80.8 153.2 46.2 REMARK 620 5 ASN B 103 OD1 86.1 86.3 70.7 75.1 REMARK 620 6 ASP B 104 OD1 160.1 81.7 70.0 116.2 88.4 REMARK 620 7 FUC B 999 O4 78.0 79.0 128.5 113.5 160.2 102.5 REMARK 620 8 FUC B 999 O3 120.1 132.1 63.7 73.7 134.4 76.8 65.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 997 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE1 REMARK 620 2 GLU B 95 OE2 53.3 REMARK 620 3 ASP B 99 OD1 85.8 82.3 REMARK 620 4 ASP B 101 OD1 79.9 131.9 84.1 REMARK 620 5 ASP B 104 OD1 117.3 130.8 146.4 77.0 REMARK 620 6 ASP B 104 OD2 83.0 80.1 162.3 107.2 51.2 REMARK 620 7 FUC B 999 O2 140.0 87.6 98.1 140.0 79.9 82.0 REMARK 620 8 FUC B 999 O3 150.2 144.0 76.6 74.7 71.7 119.1 67.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 998 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 21 O REMARK 620 2 ASP C 101 OD2 152.7 REMARK 620 3 ASP C 101 OD1 143.8 46.8 REMARK 620 4 ASN C 103 OD1 87.1 74.6 70.1 REMARK 620 5 ASP C 104 OD1 82.9 115.8 69.2 88.2 REMARK 620 6 FUC C 999 O3 132.4 73.6 63.9 134.0 76.9 REMARK 620 7 FUC C 999 O4 78.5 113.5 128.7 160.6 102.7 64.9 REMARK 620 8 GLY D 114 O 78.3 80.6 125.9 86.8 160.7 119.3 77.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 997 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 95 OE1 REMARK 620 2 GLU C 95 OE2 53.2 REMARK 620 3 ASP C 99 OD1 87.6 82.7 REMARK 620 4 ASP C 101 OD1 79.6 131.6 85.4 REMARK 620 5 ASP C 104 OD1 117.1 131.3 145.2 76.3 REMARK 620 6 ASP C 104 OD2 82.7 80.3 163.1 106.3 51.4 REMARK 620 7 FUC C 999 O2 139.5 87.4 97.3 140.7 79.8 81.4 REMARK 620 8 FUC C 999 O3 150.1 143.6 74.7 75.1 72.1 119.6 68.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 998 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY C 114 O REMARK 620 2 ASN D 21 O 79.7 REMARK 620 3 ASP D 101 OD1 124.2 144.4 REMARK 620 4 ASP D 101 OD2 80.0 154.3 45.9 REMARK 620 5 ASN D 103 OD1 85.7 87.3 70.7 75.7 REMARK 620 6 ASP D 104 OD1 161.4 82.6 69.5 115.3 87.9 REMARK 620 7 FUC D 999 O4 79.0 76.6 129.6 114.5 159.4 102.3 REMARK 620 8 FUC D 999 O3 119.4 131.0 64.3 73.3 135.0 77.0 65.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 997 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 95 OE1 REMARK 620 2 GLU D 95 OE2 53.4 REMARK 620 3 ASP D 99 OD1 86.5 84.1 REMARK 620 4 ASP D 101 OD1 79.3 131.6 83.1 REMARK 620 5 ASP D 104 OD1 116.6 130.3 145.2 76.7 REMARK 620 6 ASP D 104 OD2 82.2 79.8 163.7 106.1 51.1 REMARK 620 7 FUC D 999 O2 139.8 87.6 99.9 140.6 79.5 81.7 REMARK 620 8 FUC D 999 O3 150.9 144.5 76.3 75.5 71.4 118.6 67.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GZT RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) TOGETHER WITH FUCOSE REMARK 900 RELATED ID: 1OUR RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH MANNOSE REMARK 900 RELATED ID: 1OUS RELATED DB: PDB REMARK 900 LECB (PA-LII) CALCIUM-FREE REMARK 900 RELATED ID: 1OUX RELATED DB: PDB REMARK 900 LECB (PA-LII) SUGAR-FREE REMARK 900 RELATED ID: 1OVP RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH FRUCTOSE REMARK 900 RELATED ID: 1OVS RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH CORE TRIMANNOSIDE REMARK 900 RELATED ID: 1OXC RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH FUCOSE REMARK 900 RELATED ID: 1W38 RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) COMPLEXED WITH LACTO-N- REMARK 900 NEO-FUCOPENTAOSE V (LNPF V) REMARK 900 RELATED ID: 1W43 RELATED DB: PDB REMARK 900 STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL)COMPLEXED REMARK 900 WITH LEWISA TRISACCHARIDE REMARK 900 RELATED ID: 1W8F RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) COMPLEXED WITH LACTO-N- REMARK 900 NEO-FUCOPENTAOSE V (LNPFV) REMARK 900 RELATED ID: 1W8H RELATED DB: PDB REMARK 900 STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL)COMPLEXED REMARK 900 WITH LEWISA TRISACCHARIDE DBREF 1UZV A 1 114 UNP Q9HYN5 Q9HYN5 2 115 DBREF 1UZV B 1 114 UNP Q9HYN5 Q9HYN5 2 115 DBREF 1UZV C 1 114 UNP Q9HYN5 Q9HYN5 2 115 DBREF 1UZV D 1 114 UNP Q9HYN5 Q9HYN5 2 115 SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 A 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 A 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 A 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 B 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 B 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 B 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 B 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 B 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 B 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 B 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 B 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 C 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 C 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 C 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 C 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 C 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 C 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 C 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 C 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 C 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 D 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 D 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 D 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 D 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 D 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 D 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 D 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 D 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 D 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY HET SO4 A 990 5 HET CA A 997 1 HET CA A 998 1 HET FUC A 999 11 HET SO4 B 991 5 HET CA B 997 1 HET CA B 998 1 HET FUC B 999 11 HET CA C 997 1 HET CA C 998 1 HET FUC C 999 11 HET CA D 997 1 HET CA D 998 1 HET FUC D 999 11 HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 CA 8(CA 2+) FORMUL 8 FUC 4(C6 H12 O5) FORMUL 19 HOH *682(H2 O) SHEET 1 AA 4 VAL A 5 THR A 7 0 SHEET 2 AA 4 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AA 4 GLN A 26 VAL A 32 -1 O THR A 27 N SER A 68 SHEET 4 AA 4 GLU A 35 GLY A 42 -1 O ALA A 38 N VAL A 30 SHEET 1 AB 5 ASN A 46 LEU A 55 0 SHEET 2 AB 5 PHE A 14 ASN A 21 -1 O VAL A 16 N GLN A 53 SHEET 3 AB 5 ASP A 104 TRP A 111 -1 O VAL A 108 N THR A 17 SHEET 4 AB 5 LEU A 87 SER A 94 -1 O VAL A 92 N VAL A 107 SHEET 5 AB 5 ASP A 75 LEU A 83 -1 O ALA A 79 N LEU A 91 SHEET 1 BA 4 VAL B 5 THR B 7 0 SHEET 2 BA 4 LYS B 62 VAL B 69 -1 O VAL B 63 N PHE B 6 SHEET 3 BA 4 GLN B 26 VAL B 32 -1 O THR B 27 N SER B 68 SHEET 4 BA 4 GLU B 35 GLY B 42 -1 O ALA B 38 N VAL B 30 SHEET 1 BB 5 ASN B 46 LEU B 55 0 SHEET 2 BB 5 PHE B 14 ASN B 21 -1 O VAL B 16 N GLN B 53 SHEET 3 BB 5 ASP B 104 TRP B 111 -1 O VAL B 108 N THR B 17 SHEET 4 BB 5 LEU B 87 SER B 94 -1 O VAL B 92 N VAL B 107 SHEET 5 BB 5 ASP B 75 LEU B 83 -1 O ALA B 79 N LEU B 91 SHEET 1 CA 4 VAL C 5 THR C 7 0 SHEET 2 CA 4 LYS C 62 VAL C 69 -1 O VAL C 63 N PHE C 6 SHEET 3 CA 4 GLN C 26 VAL C 32 -1 O THR C 27 N SER C 68 SHEET 4 CA 4 GLU C 35 GLY C 42 -1 O ALA C 38 N VAL C 30 SHEET 1 CB 5 ASN C 46 LEU C 55 0 SHEET 2 CB 5 PHE C 14 ASN C 21 -1 O VAL C 16 N GLN C 53 SHEET 3 CB 5 ASP C 104 TRP C 111 -1 O VAL C 108 N THR C 17 SHEET 4 CB 5 LEU C 87 SER C 94 -1 O VAL C 92 N VAL C 107 SHEET 5 CB 5 ASP C 75 LEU C 83 -1 O ALA C 79 N LEU C 91 SHEET 1 DA 4 VAL D 5 THR D 7 0 SHEET 2 DA 4 LYS D 62 VAL D 69 -1 O VAL D 63 N PHE D 6 SHEET 3 DA 4 GLN D 26 VAL D 32 -1 O THR D 27 N SER D 68 SHEET 4 DA 4 GLU D 35 GLY D 42 -1 O ALA D 38 N VAL D 30 SHEET 1 DB 5 ASN D 46 LEU D 55 0 SHEET 2 DB 5 PHE D 14 ASN D 21 -1 O VAL D 16 N GLN D 53 SHEET 3 DB 5 ASP D 104 TRP D 111 -1 O VAL D 108 N THR D 17 SHEET 4 DB 5 LEU D 87 SER D 94 -1 O VAL D 92 N VAL D 107 SHEET 5 DB 5 ASP D 75 LEU D 83 -1 O ALA D 79 N LEU D 91 LINK O ASN A 21 CA CA A 998 1555 1555 2.38 LINK OE1 GLU A 95 CA CA A 997 1555 1555 2.46 LINK OE2 GLU A 95 CA CA A 997 1555 1555 2.41 LINK OD1 ASP A 99 CA CA A 997 1555 1555 2.36 LINK OD1 ASP A 101 CA CA A 997 1555 1555 2.37 LINK OD1 ASP A 101 CA CA A 998 1555 1555 3.01 LINK OD2 ASP A 101 CA CA A 998 1555 1555 2.41 LINK OD1 ASN A 103 CA CA A 998 1555 1555 2.34 LINK OD1 ASP A 104 CA CA A 997 1555 1555 2.63 LINK OD2 ASP A 104 CA CA A 997 1555 1555 2.42 LINK OD1 ASP A 104 CA CA A 998 1555 1555 2.35 LINK O GLY A 114 CA CA B 998 1555 1555 2.44 LINK CA CA A 997 O2 FUC A 999 1555 1555 2.51 LINK CA CA A 997 O3 FUC A 999 1555 1555 2.47 LINK CA CA A 998 O3 FUC A 999 1555 1555 2.48 LINK CA CA A 998 O4 FUC A 999 1555 1555 2.49 LINK CA CA A 998 O GLY B 114 1555 1555 2.42 LINK O ASN B 21 CA CA B 998 1555 1555 2.39 LINK OE1 GLU B 95 CA CA B 997 1555 1555 2.47 LINK OE2 GLU B 95 CA CA B 997 1555 1555 2.42 LINK OD1 ASP B 99 CA CA B 997 1555 1555 2.36 LINK OD1 ASP B 101 CA CA B 997 1555 1555 2.37 LINK OD1 ASP B 101 CA CA B 998 1555 1555 3.02 LINK OD2 ASP B 101 CA CA B 998 1555 1555 2.41 LINK OD1 ASN B 103 CA CA B 998 1555 1555 2.34 LINK OD1 ASP B 104 CA CA B 997 1555 1555 2.65 LINK OD2 ASP B 104 CA CA B 997 1555 1555 2.41 LINK OD1 ASP B 104 CA CA B 998 1555 1555 2.35 LINK CA CA B 997 O2 FUC B 999 1555 1555 2.49 LINK CA CA B 997 O3 FUC B 999 1555 1555 2.48 LINK CA CA B 998 O4 FUC B 999 1555 1555 2.51 LINK CA CA B 998 O3 FUC B 999 1555 1555 2.49 LINK O ASN C 21 CA CA C 998 1555 1555 2.37 LINK OE1 GLU C 95 CA CA C 997 1555 1555 2.48 LINK OE2 GLU C 95 CA CA C 997 1555 1555 2.42 LINK OD1 ASP C 99 CA CA C 997 1555 1555 2.37 LINK OD1 ASP C 101 CA CA C 997 1555 1555 2.37 LINK OD2 ASP C 101 CA CA C 998 1555 1555 2.42 LINK OD1 ASP C 101 CA CA C 998 1555 1555 3.02 LINK OD1 ASN C 103 CA CA C 998 1555 1555 2.33 LINK OD1 ASP C 104 CA CA C 997 1555 1555 2.65 LINK OD2 ASP C 104 CA CA C 997 1555 1555 2.41 LINK OD1 ASP C 104 CA CA C 998 1555 1555 2.36 LINK O GLY C 114 CA CA D 998 1555 1555 2.41 LINK CA CA C 997 O2 FUC C 999 1555 1555 2.51 LINK CA CA C 997 O3 FUC C 999 1555 1555 2.48 LINK CA CA C 998 O3 FUC C 999 1555 1555 2.50 LINK CA CA C 998 O4 FUC C 999 1555 1555 2.48 LINK CA CA C 998 O GLY D 114 1555 1555 2.43 LINK O ASN D 21 CA CA D 998 1555 1555 2.39 LINK OE1 GLU D 95 CA CA D 997 1555 1555 2.45 LINK OE2 GLU D 95 CA CA D 997 1555 1555 2.41 LINK OD1 ASP D 99 CA CA D 997 1555 1555 2.38 LINK OD1 ASP D 101 CA CA D 997 1555 1555 2.36 LINK OD1 ASP D 101 CA CA D 998 1555 1555 3.03 LINK OD2 ASP D 101 CA CA D 998 1555 1555 2.43 LINK OD1 ASN D 103 CA CA D 998 1555 1555 2.33 LINK OD1 ASP D 104 CA CA D 997 1555 1555 2.64 LINK OD2 ASP D 104 CA CA D 997 1555 1555 2.41 LINK OD1 ASP D 104 CA CA D 998 1555 1555 2.34 LINK CA CA D 997 O2 FUC D 999 1555 1555 2.48 LINK CA CA D 997 O3 FUC D 999 1555 1555 2.48 LINK CA CA D 998 O4 FUC D 999 1555 1555 2.50 LINK CA CA D 998 O3 FUC D 999 1555 1555 2.46 CISPEP 1 TRP A 111 PRO A 112 0 -7.55 CISPEP 2 TRP B 111 PRO B 112 0 -6.64 CISPEP 3 TRP C 111 PRO C 112 0 -7.54 CISPEP 4 TRP D 111 PRO D 112 0 -10.39 CRYST1 52.735 72.827 54.747 90.00 94.21 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018963 0.000000 0.001396 0.00000 SCALE2 0.000000 0.013731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018315 0.00000