HEADER HYDROLASE 25-MAR-04 1V0A TITLE FAMILY 11 CARBOHYDRATE-BINDING MODULE OF CELLULOSOMAL CELLULASE TITLE 2 LIC26A-CEL5E OF CLOSTRIDIUM THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOGLUCANASE H; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELLULOSE BINDING PROTEIN A, EGH, ENDO-1,4-BETA-GLUCANASE, COMPND 5 CELLULASE H; COMPND 6 EC: 3.2.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 1515; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBOHYDRATE BINDING MODULE, CELLULOSOME, CLOSTRIDIUM THERMOCELLUM, KEYWDS 2 CELLULOSE DEGRADATION, HYDROLASE, GLYCOSIDASE EXPDTA X-RAY DIFFRACTION AUTHOR A.L.CARVALHO,M.J.ROMAO,A.GOYAL,J.A.M.PRATES,V.M.R.PIRES, AUTHOR 2 L.M.A.FERREIRA,D.N.BOLAM,H.J.GILBERT,C.M.G.A.FONTES REVDAT 3 06-NOV-24 1V0A 1 LINK REVDAT 2 24-FEB-09 1V0A 1 VERSN REVDAT 1 12-JAN-05 1V0A 0 JRNL AUTH A.L.CARVALHO,A.GOYAL,J.A.M.PRATES,D.N.BOLAM,H.J.GILBERT, JRNL AUTH 2 V.M.R.PIRES,L.M.A.FERREIRA,A.PLANAS,M.J.ROMAO,C.M.G.A.FONTES JRNL TITL THE FAMILY 11 CARBOHYDRATE-BINDING MODULE OF CLOSTRIDIUM JRNL TITL 2 THERMOCELLUM LIC26A-CEL5E ACCOMODATES BETA-1,4- AND JRNL TITL 3 BETA-1,3-1,4-MIXED LINKED GLUCANS AT A SINGLE BINDING SITE JRNL REF J.BIOL.CHEM. V. 279 34785 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15192099 JRNL DOI 10.1074/JBC.M405867200 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 10598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 535 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 712 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1333 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.225 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.961 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1354 ; 0.005 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1835 ; 0.829 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 168 ; 5.721 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 193 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1023 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 575 ; 0.158 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 145 ; 0.071 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.046 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.094 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.070 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 834 ; 0.244 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1335 ; 0.476 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 520 ; 0.875 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 500 ; 1.258 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1290014862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.981033,0.981266, 0.976315 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11449 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.977 REMARK 200 RESOLUTION RANGE LOW (A) : 24.299 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 1.840 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.09900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.57150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.44600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.57150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.44600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CATALYTIC ACTIVITY: ENDOHYDROLYSIS OF 1,4-BETA-D-GLUCOSIDIC REMARK 400 LINKAGES IN CELLULOSE, LICHENIN AND CEREAL BETA-D-GLUCANS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 79 REMARK 465 GLY A 80 REMARK 465 SER A 81 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 8 NZ REMARK 480 SER A 21 OG REMARK 480 LYS A 28 CD CE NZ REMARK 480 LYS A 37 NZ REMARK 480 ASP A 51 CG OD1 OD2 REMARK 480 ASP A 62 CG OD1 OD2 REMARK 480 LYS A 67 NZ REMARK 480 ASN A 95 OD1 ND2 REMARK 480 ASP A 110 OD1 OD2 REMARK 480 SER A 111 OG REMARK 480 LYS A 114 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 110 O HOH A 2122 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 8 CE LYS A 8 NZ -0.160 REMARK 500 SER A 21 CB SER A 21 OG 0.102 REMARK 500 LYS A 28 CG LYS A 28 CD -0.488 REMARK 500 LYS A 37 CE LYS A 37 NZ 0.258 REMARK 500 ASP A 62 CB ASP A 62 CG 0.528 REMARK 500 SER A 111 CB SER A 111 OG 0.490 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 37 CD - CE - NZ ANGL. DEV. = 14.4 DEGREES REMARK 500 ASP A 51 CB - CG - OD1 ANGL. DEV. = 19.2 DEGREES REMARK 500 ASP A 51 CB - CG - OD2 ANGL. DEV. = -14.3 DEGREES REMARK 500 ASP A 62 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 62 CB - CG - OD2 ANGL. DEV. = 11.0 DEGREES REMARK 500 LYS A 67 CD - CE - NZ ANGL. DEV. = 27.1 DEGREES REMARK 500 LYS A 114 CG - CD - CE ANGL. DEV. = 36.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 114.43 -161.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1177 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 O REMARK 620 2 GLU A 14 OE1 81.7 REMARK 620 3 THR A 38 O 156.4 74.7 REMARK 620 4 ASN A 40 O 87.4 96.1 93.8 REMARK 620 5 ASP A 163 OD1 78.8 160.3 124.9 85.7 REMARK 620 6 ASP A 163 OD2 127.2 150.0 76.0 79.5 49.6 REMARK 620 7 HOH A2174 O 97.8 89.9 83.5 172.5 90.1 93.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1176 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 91 OE2 REMARK 620 2 GLU A 91 OE1 50.9 REMARK 620 3 GLU A 101 OE1 88.5 98.9 REMARK 620 4 ASP A 135 OD2 124.3 77.3 122.1 REMARK 620 5 ASP A 135 OD1 125.8 81.0 74.4 47.8 REMARK 620 6 SER A 137 OG 151.8 155.3 92.9 78.1 81.3 REMARK 620 7 THR A 139 O 71.1 121.5 85.0 146.1 152.0 80.9 REMARK 620 8 ASP A 141 OD2 84.6 87.7 164.2 73.2 121.0 86.7 79.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1176 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1178 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1179 DBREF 1V0A A 1 3 PDB 1V0A 1V0A 1 3 DBREF 1V0A A 4 170 UNP P16218 GUNH_CLOTM 655 821 DBREF 1V0A A 171 178 PDB 1V0A 1V0A 171 178 SEQRES 1 A 178 MSE ALA SER ALA VAL GLY GLU LYS MSE LEU ASP ASP PHE SEQRES 2 A 178 GLU GLY VAL LEU ASN TRP GLY SER TYR SER GLY GLU GLY SEQRES 3 A 178 ALA LYS VAL SER THR LYS ILE VAL SER GLY LYS THR GLY SEQRES 4 A 178 ASN GLY MSE GLU VAL SER TYR THR GLY THR THR ASP GLY SEQRES 5 A 178 TYR TRP GLY THR VAL TYR SER LEU PRO ASP GLY ASP TRP SEQRES 6 A 178 SER LYS TRP LEU LYS ILE SER PHE ASP ILE LYS SER VAL SEQRES 7 A 178 ASP GLY SER ALA ASN GLU ILE ARG PHE MSE ILE ALA GLU SEQRES 8 A 178 LYS SER ILE ASN GLY VAL GLY ASP GLY GLU HIS TRP VAL SEQRES 9 A 178 TYR SER ILE THR PRO ASP SER SER TRP LYS THR ILE GLU SEQRES 10 A 178 ILE PRO PHE SER SER PHE ARG ARG ARG LEU ASP TYR GLN SEQRES 11 A 178 PRO PRO GLY GLN ASP MSE SER GLY THR LEU ASP LEU ASP SEQRES 12 A 178 ASN ILE ASP SER ILE HIS PHE MSE TYR ALA ASN ASN LYS SEQRES 13 A 178 SER GLY LYS PHE VAL VAL ASP ASN ILE LYS LEU ILE GLY SEQRES 14 A 178 ALA LEU GLU HIS HIS HIS HIS HIS HIS MODRES 1V0A MSE A 9 MET SELENOMETHIONINE MODRES 1V0A MSE A 42 MET SELENOMETHIONINE MODRES 1V0A MSE A 88 MET SELENOMETHIONINE MODRES 1V0A MSE A 136 MET SELENOMETHIONINE MODRES 1V0A MSE A 151 MET SELENOMETHIONINE HET MSE A 9 8 HET MSE A 42 8 HET MSE A 88 8 HET MSE A 136 8 HET MSE A 151 8 HET CA A1176 1 HET CA A1177 1 HET SO4 A1178 5 HET SO4 A1179 5 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *182(H2 O) HELIX 1 1 SER A 121 PHE A 123 5 3 SHEET 1 AA 4 GLU A 7 ASP A 11 0 SHEET 2 AA 4 GLY A 158 ILE A 168 -1 O ILE A 165 N LEU A 10 SHEET 3 AA 4 ASN A 40 THR A 47 -1 O MSE A 42 N VAL A 162 SHEET 4 AA 4 LYS A 28 SER A 35 -1 O LYS A 28 N THR A 47 SHEET 1 AB 4 GLU A 7 ASP A 11 0 SHEET 2 AB 4 GLY A 158 ILE A 168 -1 O ILE A 165 N LEU A 10 SHEET 3 AB 4 LYS A 70 SER A 77 -1 O LYS A 70 N ILE A 168 SHEET 4 AB 4 LYS A 114 PRO A 119 -1 O LYS A 114 N ILE A 75 SHEET 1 AC 6 GLY A 20 GLY A 24 0 SHEET 2 AC 6 TYR A 53 SER A 59 -1 O TYR A 53 N GLY A 24 SHEET 3 AC 6 ILE A 145 TYR A 152 -1 O ILE A 148 N TYR A 58 SHEET 4 AC 6 ILE A 85 LYS A 92 -1 O ARG A 86 N MSE A 151 SHEET 5 AC 6 ASP A 99 ILE A 107 -1 N GLY A 100 O GLU A 91 SHEET 6 AC 6 ARG A 124 ARG A 125 -1 O ARG A 124 N VAL A 104 LINK C LYS A 8 N MSE A 9 1555 1555 1.33 LINK C MSE A 9 N LEU A 10 1555 1555 1.33 LINK C GLY A 41 N MSE A 42 1555 1555 1.33 LINK C MSE A 42 N GLU A 43 1555 1555 1.33 LINK C PHE A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N ILE A 89 1555 1555 1.33 LINK C ASP A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N SER A 137 1555 1555 1.33 LINK C PHE A 150 N MSE A 151 1555 1555 1.33 LINK C MSE A 151 N TYR A 152 1555 1555 1.33 LINK O ASP A 12 CA CA A1177 1555 1555 2.45 LINK OE1 GLU A 14 CA CA A1177 1555 1555 2.40 LINK O THR A 38 CA CA A1177 1555 1555 2.41 LINK O ASN A 40 CA CA A1177 1555 1555 2.33 LINK OE2 GLU A 91 CA CA A1176 1555 1555 2.59 LINK OE1 GLU A 91 CA CA A1176 1555 1555 2.50 LINK OE1 GLU A 101 CA CA A1176 1555 1555 2.37 LINK OD2 ASP A 135 CA CA A1176 1555 1555 2.53 LINK OD1 ASP A 135 CA CA A1176 1555 1555 2.74 LINK OG SER A 137 CA CA A1176 1555 1555 2.43 LINK O THR A 139 CA CA A1176 1555 1555 2.42 LINK OD2 ASP A 141 CA CA A1176 1555 1555 2.41 LINK OD1 ASP A 163 CA CA A1177 1555 1555 2.50 LINK OD2 ASP A 163 CA CA A1177 1555 1555 2.60 LINK CA CA A1177 O HOH A2174 1555 1555 2.39 SITE 1 AC1 6 GLU A 91 GLU A 101 ASP A 135 SER A 137 SITE 2 AC1 6 THR A 139 ASP A 141 SITE 1 AC2 6 ASP A 12 GLU A 14 THR A 38 ASN A 40 SITE 2 AC2 6 ASP A 163 HOH A2174 SITE 1 AC3 4 LYS A 70 ALA A 170 LEU A 171 HIS A 173 SITE 1 AC4 5 HIS A 173 HIS A 174 HIS A 175 HOH A2181 SITE 2 AC4 5 HOH A2182 CRYST1 75.143 50.892 40.868 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013308 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019649 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024469 0.00000