HEADER OXIDOREDUCTASE 21-NOV-03 1V59 TITLE CRYSTAL STRUCTURE OF YEAST LIPOAMIDE DEHYDROGENASE COMPLEXED WITH NAD+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROLIPOAMIDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS 2-OXOACID DEHYDROGANESE COMPLEX, PYRUVATE DEHYDROGENASE COMPLEX, KEYWDS 2 LIPOAMIDE DEHYDROGENASE, DIHYDROLIPOAMIDE DEHYDROGENASE, PYRIDINE KEYWDS 3 NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE, NAD+, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.ADACHI,K.SUZUKI,M.TSUNODA,T.SEKIGUCHI,L.J.REED,A.TAKENAKA REVDAT 3 27-DEC-23 1V59 1 REMARK LINK REVDAT 2 24-FEB-09 1V59 1 VERSN REVDAT 1 15-FEB-05 1V59 0 JRNL AUTH W.ADACHI,K.SUZUKI,M.TSUNODA,T.SEKIGUCHI,L.J.REED,A.TAKENAKA JRNL TITL CRYSTAL STRUCTURE OF YEAST LIPOAMIDE DEHYDROGENASE COMPLEXED JRNL TITL 2 WITH NAD+ JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2426941.600 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 52917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5369 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7774 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 906 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7231 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 161 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.250 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.020 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.900 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 42.26 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000006222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : ROTATED-INCLINED SI(111) DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD PX210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53020 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 39.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.160 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.34 REMARK 200 R MERGE FOR SHELL (I) : 0.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MPD, HEPES, POTASSIUM REMARK 280 PHOSPHATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.30000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE DIMER REMARK 300 IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 71 CD CE NZ REMARK 470 GLU A 381 CG CD OE1 OE2 REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 GLU B 381 CG CD OE1 OE2 REMARK 470 LYS B 416 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 49 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 CYS B 49 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 47 30.71 -146.61 REMARK 500 ASP A 122 -164.79 -160.87 REMARK 500 ASP A 132 -80.18 -19.44 REMARK 500 ALA A 152 52.18 -147.28 REMARK 500 GLU A 167 19.44 59.46 REMARK 500 GLU A 168 -62.97 -122.61 REMARK 500 ALA A 220 -61.82 76.05 REMARK 500 ASP A 311 1.51 -64.07 REMARK 500 THR A 327 -162.17 -123.52 REMARK 500 LYS A 348 -62.56 -93.31 REMARK 500 TYR A 364 45.61 -90.18 REMARK 500 ASP A 473 -117.85 -148.65 REMARK 500 ASP B 132 -75.75 -25.83 REMARK 500 ALA B 152 50.91 -141.07 REMARK 500 GLU B 167 46.77 -71.47 REMARK 500 GLU B 168 -60.76 -131.87 REMARK 500 ILE B 218 -168.89 -101.26 REMARK 500 ALA B 220 95.91 50.49 REMARK 500 SER B 221 -28.51 117.19 REMARK 500 SER B 244 42.60 34.48 REMARK 500 ALA B 250 147.93 179.22 REMARK 500 THR B 268 -3.06 -172.69 REMARK 500 ASN B 269 25.78 45.99 REMARK 500 THR B 327 -159.37 -123.76 REMARK 500 ASN B 358 41.69 -142.98 REMARK 500 TYR B 364 41.60 -89.53 REMARK 500 ASP B 404 82.33 -155.26 REMARK 500 ASP B 473 -116.29 -145.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAD A 482 REMARK 610 NAD B 483 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 484 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 483 DBREF 1V59 A 1 478 UNP P09624 DLDH_YEAST 22 499 DBREF 1V59 B 1 478 UNP P09624 DLDH_YEAST 22 499 SEQRES 1 A 478 THR ILE ASN LYS SER HIS ASP VAL VAL ILE ILE GLY GLY SEQRES 2 A 478 GLY PRO ALA GLY TYR VAL ALA ALA ILE LYS ALA ALA GLN SEQRES 3 A 478 LEU GLY PHE ASN THR ALA CYS VAL GLU LYS ARG GLY LYS SEQRES 4 A 478 LEU GLY GLY THR CYS LEU ASN VAL GLY CYS ILE PRO SER SEQRES 5 A 478 LYS ALA LEU LEU ASN ASN SER HIS LEU PHE HIS GLN MET SEQRES 6 A 478 HIS THR GLU ALA GLN LYS ARG GLY ILE ASP VAL ASN GLY SEQRES 7 A 478 ASP ILE LYS ILE ASN VAL ALA ASN PHE GLN LYS ALA LYS SEQRES 8 A 478 ASP ASP ALA VAL LYS GLN LEU THR GLY GLY ILE GLU LEU SEQRES 9 A 478 LEU PHE LYS LYS ASN LYS VAL THR TYR TYR LYS GLY ASN SEQRES 10 A 478 GLY SER PHE GLU ASP GLU THR LYS ILE ARG VAL THR PRO SEQRES 11 A 478 VAL ASP GLY LEU GLU GLY THR VAL LYS GLU ASP HIS ILE SEQRES 12 A 478 LEU ASP VAL LYS ASN ILE ILE VAL ALA THR GLY SER GLU SEQRES 13 A 478 VAL THR PRO PHE PRO GLY ILE GLU ILE ASP GLU GLU LYS SEQRES 14 A 478 ILE VAL SER SER THR GLY ALA LEU SER LEU LYS GLU ILE SEQRES 15 A 478 PRO LYS ARG LEU THR ILE ILE GLY GLY GLY ILE ILE GLY SEQRES 16 A 478 LEU GLU MET GLY SER VAL TYR SER ARG LEU GLY SER LYS SEQRES 17 A 478 VAL THR VAL VAL GLU PHE GLN PRO GLN ILE GLY ALA SER SEQRES 18 A 478 MET ASP GLY GLU VAL ALA LYS ALA THR GLN LYS PHE LEU SEQRES 19 A 478 LYS LYS GLN GLY LEU ASP PHE LYS LEU SER THR LYS VAL SEQRES 20 A 478 ILE SER ALA LYS ARG ASN ASP ASP LYS ASN VAL VAL GLU SEQRES 21 A 478 ILE VAL VAL GLU ASP THR LYS THR ASN LYS GLN GLU ASN SEQRES 22 A 478 LEU GLU ALA GLU VAL LEU LEU VAL ALA VAL GLY ARG ARG SEQRES 23 A 478 PRO TYR ILE ALA GLY LEU GLY ALA GLU LYS ILE GLY LEU SEQRES 24 A 478 GLU VAL ASP LYS ARG GLY ARG LEU VAL ILE ASP ASP GLN SEQRES 25 A 478 PHE ASN SER LYS PHE PRO HIS ILE LYS VAL VAL GLY ASP SEQRES 26 A 478 VAL THR PHE GLY PRO MET LEU ALA HIS LYS ALA GLU GLU SEQRES 27 A 478 GLU GLY ILE ALA ALA VAL GLU MET LEU LYS THR GLY HIS SEQRES 28 A 478 GLY HIS VAL ASN TYR ASN ASN ILE PRO SER VAL MET TYR SEQRES 29 A 478 SER HIS PRO GLU VAL ALA TRP VAL GLY LYS THR GLU GLU SEQRES 30 A 478 GLN LEU LYS GLU ALA GLY ILE ASP TYR LYS ILE GLY LYS SEQRES 31 A 478 PHE PRO PHE ALA ALA ASN SER ARG ALA LYS THR ASN GLN SEQRES 32 A 478 ASP THR GLU GLY PHE VAL LYS ILE LEU ILE ASP SER LYS SEQRES 33 A 478 THR GLU ARG ILE LEU GLY ALA HIS ILE ILE GLY PRO ASN SEQRES 34 A 478 ALA GLY GLU MET ILE ALA GLU ALA GLY LEU ALA LEU GLU SEQRES 35 A 478 TYR GLY ALA SER ALA GLU ASP VAL ALA ARG VAL CYS HIS SEQRES 36 A 478 ALA HIS PRO THR LEU SER GLU ALA PHE LYS GLU ALA ASN SEQRES 37 A 478 MET ALA ALA TYR ASP LYS ALA ILE HIS CYS SEQRES 1 B 478 THR ILE ASN LYS SER HIS ASP VAL VAL ILE ILE GLY GLY SEQRES 2 B 478 GLY PRO ALA GLY TYR VAL ALA ALA ILE LYS ALA ALA GLN SEQRES 3 B 478 LEU GLY PHE ASN THR ALA CYS VAL GLU LYS ARG GLY LYS SEQRES 4 B 478 LEU GLY GLY THR CYS LEU ASN VAL GLY CYS ILE PRO SER SEQRES 5 B 478 LYS ALA LEU LEU ASN ASN SER HIS LEU PHE HIS GLN MET SEQRES 6 B 478 HIS THR GLU ALA GLN LYS ARG GLY ILE ASP VAL ASN GLY SEQRES 7 B 478 ASP ILE LYS ILE ASN VAL ALA ASN PHE GLN LYS ALA LYS SEQRES 8 B 478 ASP ASP ALA VAL LYS GLN LEU THR GLY GLY ILE GLU LEU SEQRES 9 B 478 LEU PHE LYS LYS ASN LYS VAL THR TYR TYR LYS GLY ASN SEQRES 10 B 478 GLY SER PHE GLU ASP GLU THR LYS ILE ARG VAL THR PRO SEQRES 11 B 478 VAL ASP GLY LEU GLU GLY THR VAL LYS GLU ASP HIS ILE SEQRES 12 B 478 LEU ASP VAL LYS ASN ILE ILE VAL ALA THR GLY SER GLU SEQRES 13 B 478 VAL THR PRO PHE PRO GLY ILE GLU ILE ASP GLU GLU LYS SEQRES 14 B 478 ILE VAL SER SER THR GLY ALA LEU SER LEU LYS GLU ILE SEQRES 15 B 478 PRO LYS ARG LEU THR ILE ILE GLY GLY GLY ILE ILE GLY SEQRES 16 B 478 LEU GLU MET GLY SER VAL TYR SER ARG LEU GLY SER LYS SEQRES 17 B 478 VAL THR VAL VAL GLU PHE GLN PRO GLN ILE GLY ALA SER SEQRES 18 B 478 MET ASP GLY GLU VAL ALA LYS ALA THR GLN LYS PHE LEU SEQRES 19 B 478 LYS LYS GLN GLY LEU ASP PHE LYS LEU SER THR LYS VAL SEQRES 20 B 478 ILE SER ALA LYS ARG ASN ASP ASP LYS ASN VAL VAL GLU SEQRES 21 B 478 ILE VAL VAL GLU ASP THR LYS THR ASN LYS GLN GLU ASN SEQRES 22 B 478 LEU GLU ALA GLU VAL LEU LEU VAL ALA VAL GLY ARG ARG SEQRES 23 B 478 PRO TYR ILE ALA GLY LEU GLY ALA GLU LYS ILE GLY LEU SEQRES 24 B 478 GLU VAL ASP LYS ARG GLY ARG LEU VAL ILE ASP ASP GLN SEQRES 25 B 478 PHE ASN SER LYS PHE PRO HIS ILE LYS VAL VAL GLY ASP SEQRES 26 B 478 VAL THR PHE GLY PRO MET LEU ALA HIS LYS ALA GLU GLU SEQRES 27 B 478 GLU GLY ILE ALA ALA VAL GLU MET LEU LYS THR GLY HIS SEQRES 28 B 478 GLY HIS VAL ASN TYR ASN ASN ILE PRO SER VAL MET TYR SEQRES 29 B 478 SER HIS PRO GLU VAL ALA TRP VAL GLY LYS THR GLU GLU SEQRES 30 B 478 GLN LEU LYS GLU ALA GLY ILE ASP TYR LYS ILE GLY LYS SEQRES 31 B 478 PHE PRO PHE ALA ALA ASN SER ARG ALA LYS THR ASN GLN SEQRES 32 B 478 ASP THR GLU GLY PHE VAL LYS ILE LEU ILE ASP SER LYS SEQRES 33 B 478 THR GLU ARG ILE LEU GLY ALA HIS ILE ILE GLY PRO ASN SEQRES 34 B 478 ALA GLY GLU MET ILE ALA GLU ALA GLY LEU ALA LEU GLU SEQRES 35 B 478 TYR GLY ALA SER ALA GLU ASP VAL ALA ARG VAL CYS HIS SEQRES 36 B 478 ALA HIS PRO THR LEU SER GLU ALA PHE LYS GLU ALA ASN SEQRES 37 B 478 MET ALA ALA TYR ASP LYS ALA ILE HIS CYS HET PO4 A 484 5 HET FAD A 480 53 HET NAD A 482 27 HET FAD B 481 53 HET NAD B 483 23 HETNAM PO4 PHOSPHATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 PO4 O4 P 3- FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 8 HOH *407(H2 O) HELIX 1 1 GLY A 14 LEU A 27 1 14 HELIX 2 2 GLY A 41 GLY A 48 1 8 HELIX 3 3 GLY A 48 GLU A 68 1 21 HELIX 4 4 ALA A 69 ARG A 72 5 4 HELIX 5 5 ASN A 83 ASN A 109 1 27 HELIX 6 6 SER A 172 LEU A 177 1 6 HELIX 7 7 GLY A 192 LEU A 205 1 14 HELIX 8 8 ASP A 223 GLN A 237 1 15 HELIX 9 9 GLY A 324 THR A 327 5 4 HELIX 10 10 LEU A 332 GLY A 350 1 19 HELIX 11 11 THR A 375 ALA A 382 1 8 HELIX 12 12 ASN A 396 ASN A 402 1 7 HELIX 13 13 ASN A 429 TYR A 443 1 15 HELIX 14 14 SER A 446 ARG A 452 1 7 HELIX 15 15 SER A 461 ASP A 473 1 13 HELIX 16 16 GLY B 14 LEU B 27 1 14 HELIX 17 17 GLY B 41 GLY B 48 1 8 HELIX 18 18 GLY B 48 GLU B 68 1 21 HELIX 19 19 ALA B 69 ARG B 72 5 4 HELIX 20 20 ASN B 83 ASN B 109 1 27 HELIX 21 21 SER B 172 LEU B 177 1 6 HELIX 22 22 GLY B 192 LEU B 205 1 14 HELIX 23 23 ASP B 223 GLN B 237 1 15 HELIX 24 24 GLY B 293 GLY B 298 1 6 HELIX 25 25 GLY B 324 THR B 327 5 4 HELIX 26 26 LEU B 332 GLY B 350 1 19 HELIX 27 27 THR B 375 GLU B 381 1 7 HELIX 28 28 ASN B 396 ASN B 402 1 7 HELIX 29 29 ASN B 429 GLY B 444 1 16 HELIX 30 30 SER B 446 ARG B 452 1 7 HELIX 31 31 LEU B 460 ASP B 473 1 14 SHEET 1 A 6 THR A 112 LYS A 115 0 SHEET 2 A 6 THR A 31 GLU A 35 1 N CYS A 33 O THR A 112 SHEET 3 A 6 ILE A 2 ILE A 11 1 N ILE A 10 O VAL A 34 SHEET 4 A 6 HIS A 142 VAL A 151 1 O ILE A 143 N ILE A 2 SHEET 5 A 6 LYS A 125 THR A 129 -1 N ILE A 126 O LEU A 144 SHEET 6 A 6 ASN A 117 PHE A 120 -1 N ASN A 117 O THR A 129 SHEET 1 B 5 THR A 112 LYS A 115 0 SHEET 2 B 5 THR A 31 GLU A 35 1 N CYS A 33 O THR A 112 SHEET 3 B 5 ILE A 2 ILE A 11 1 N ILE A 10 O VAL A 34 SHEET 4 B 5 HIS A 142 VAL A 151 1 O ILE A 143 N ILE A 2 SHEET 5 B 5 ILE A 320 VAL A 322 1 O LYS A 321 N VAL A 151 SHEET 1 C 2 ILE A 74 VAL A 76 0 SHEET 2 C 2 ILE B 80 ILE B 82 -1 O LYS B 81 N ASP A 75 SHEET 1 D 2 ILE A 80 ILE A 82 0 SHEET 2 D 2 ILE B 74 VAL B 76 -1 O ASP B 75 N LYS A 81 SHEET 1 E 2 SER A 155 VAL A 157 0 SHEET 2 E 2 ARG A 285 PRO A 287 -1 O ARG A 286 N GLU A 156 SHEET 1 F 5 ILE A 170 VAL A 171 0 SHEET 2 F 5 VAL A 278 VAL A 281 1 O VAL A 281 N VAL A 171 SHEET 3 F 5 ARG A 185 ILE A 189 1 N ILE A 189 O LEU A 280 SHEET 4 F 5 LYS A 208 VAL A 212 1 O VAL A 212 N ILE A 188 SHEET 5 F 5 ASP A 240 LYS A 242 1 O ASP A 240 N VAL A 211 SHEET 1 G 3 THR A 245 ASN A 253 0 SHEET 2 G 3 VAL A 258 ASP A 265 -1 O VAL A 262 N SER A 249 SHEET 3 G 3 LYS A 270 ALA A 276 -1 O LEU A 274 N ILE A 261 SHEET 1 H 5 SER A 361 MET A 363 0 SHEET 2 H 5 GLU A 368 GLY A 373 -1 O VAL A 369 N MET A 363 SHEET 3 H 5 ILE A 420 GLY A 427 -1 O ILE A 425 N ALA A 370 SHEET 4 H 5 PHE A 408 ASP A 414 -1 N LEU A 412 O LEU A 421 SHEET 5 H 5 TYR A 386 PRO A 392 -1 N GLY A 389 O ILE A 411 SHEET 1 I 6 THR B 112 LYS B 115 0 SHEET 2 I 6 THR B 31 GLU B 35 1 N CYS B 33 O TYR B 114 SHEET 3 I 6 ILE B 2 ILE B 11 1 N ILE B 10 O VAL B 34 SHEET 4 I 6 HIS B 142 VAL B 151 1 O ASP B 145 N LYS B 4 SHEET 5 I 6 LYS B 125 THR B 129 -1 N ILE B 126 O LEU B 144 SHEET 6 I 6 ASN B 117 PHE B 120 -1 N SER B 119 O ARG B 127 SHEET 1 J 5 THR B 112 LYS B 115 0 SHEET 2 J 5 THR B 31 GLU B 35 1 N CYS B 33 O TYR B 114 SHEET 3 J 5 ILE B 2 ILE B 11 1 N ILE B 10 O VAL B 34 SHEET 4 J 5 HIS B 142 VAL B 151 1 O ASP B 145 N LYS B 4 SHEET 5 J 5 ILE B 320 VAL B 322 1 O LYS B 321 N VAL B 151 SHEET 1 K 2 SER B 155 VAL B 157 0 SHEET 2 K 2 ARG B 285 PRO B 287 -1 O ARG B 286 N GLU B 156 SHEET 1 L 5 ILE B 170 VAL B 171 0 SHEET 2 L 5 VAL B 278 VAL B 281 1 O VAL B 281 N VAL B 171 SHEET 3 L 5 ARG B 185 ILE B 189 1 N THR B 187 O LEU B 280 SHEET 4 L 5 LYS B 208 VAL B 212 1 O THR B 210 N ILE B 188 SHEET 5 L 5 ASP B 240 LYS B 242 1 O ASP B 240 N VAL B 211 SHEET 1 M 3 THR B 245 ASN B 253 0 SHEET 2 M 3 VAL B 258 ASP B 265 -1 O GLU B 264 N LYS B 246 SHEET 3 M 3 GLN B 271 ALA B 276 -1 O ALA B 276 N VAL B 259 SHEET 1 N 5 SER B 361 MET B 363 0 SHEET 2 N 5 GLU B 368 GLY B 373 -1 O VAL B 369 N MET B 363 SHEET 3 N 5 ILE B 420 GLY B 427 -1 O ILE B 425 N ALA B 370 SHEET 4 N 5 PHE B 408 ASP B 414 -1 N LEU B 412 O LEU B 421 SHEET 5 N 5 TYR B 386 PRO B 392 -1 N GLY B 389 O ILE B 411 SSBOND 1 CYS A 44 CYS A 49 1555 1555 2.05 SSBOND 2 CYS B 44 CYS B 49 1555 1555 2.05 LINK OE2 GLU A 35 O3B FAD A 480 1555 1555 2.46 LINK OE2 GLU B 35 O3B FAD B 481 1555 1555 2.56 CISPEP 1 HIS A 366 PRO A 367 0 0.08 CISPEP 2 HIS A 457 PRO A 458 0 -0.32 CISPEP 3 HIS B 366 PRO B 367 0 0.10 CISPEP 4 HIS B 457 PRO B 458 0 -0.15 SITE 1 AC1 5 ILE A 2 VAL A 138 LYS A 139 GLU A 140 SITE 2 AC1 5 HIS A 142 SITE 1 AC2 37 GLY A 12 GLY A 14 PRO A 15 ALA A 16 SITE 2 AC2 37 VAL A 34 GLU A 35 LYS A 36 ARG A 37 SITE 3 AC2 37 GLY A 42 THR A 43 CYS A 44 GLY A 48 SITE 4 AC2 37 CYS A 49 LYS A 53 GLY A 116 ASN A 117 SITE 5 AC2 37 GLY A 118 ALA A 152 THR A 153 GLY A 154 SITE 6 AC2 37 SER A 155 SER A 173 ARG A 285 TYR A 288 SITE 7 AC2 37 GLY A 324 ASP A 325 MET A 331 LEU A 332 SITE 8 AC2 37 ALA A 333 HIS A 334 TYR A 364 HOH A 579 SITE 9 AC2 37 HOH A 580 HOH A 581 HOH A 612 HOH A 658 SITE 10 AC2 37 HIS B 457 SITE 1 AC3 35 HIS A 457 GLY B 12 GLY B 14 PRO B 15 SITE 2 AC3 35 ALA B 16 GLU B 35 LYS B 36 ARG B 37 SITE 3 AC3 35 GLY B 42 THR B 43 CYS B 44 GLY B 48 SITE 4 AC3 35 CYS B 49 LYS B 53 GLY B 116 ASN B 117 SITE 5 AC3 35 GLY B 118 ALA B 152 THR B 153 GLY B 154 SITE 6 AC3 35 SER B 155 ARG B 285 TYR B 288 GLY B 324 SITE 7 AC3 35 ASP B 325 MET B 331 LEU B 332 ALA B 333 SITE 8 AC3 35 HIS B 334 TYR B 364 HOH B 500 HOH B 504 SITE 9 AC3 35 HOH B 530 HOH B 573 HOH B 809 SITE 1 AC4 13 PHE A 160 GLY A 190 GLY A 192 GLU A 213 SITE 2 AC4 13 PHE A 214 GLN A 215 THR A 245 LYS A 246 SITE 3 AC4 13 VAL A 247 ALA A 282 VAL A 283 GLY A 284 SITE 4 AC4 13 HOH A 829 SITE 1 AC5 12 PHE B 160 ILE B 189 GLY B 190 VAL B 212 SITE 2 AC5 12 GLU B 213 PHE B 214 GLN B 215 THR B 245 SITE 3 AC5 12 VAL B 247 VAL B 283 GLY B 284 HOH B 563 CRYST1 66.600 96.400 160.100 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015015 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006246 0.00000