data_1V5A # _entry.id 1V5A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1V5A pdb_00001v5a 10.2210/pdb1v5a/pdb RCSB RCSB006223 ? ? WWPDB D_1000006223 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-03-01 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2023-12-27 6 'Structure model' 1 5 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 6 'Structure model' pdbx_entry_details 8 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1V5A _pdbx_database_status.recvd_initial_deposition_date 2003-11-21 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kohno, T.' 1 'Sasaki, T.' 2 'Sato, K.' 3 # _citation.id primary _citation.title 'Solution Structure of Covalitoxin I' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kohno, T.' 1 ? primary 'Sasaki, T.' 2 ? primary 'Sato, K.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Covalitoxin-I _entity.formula_weight 2818.434 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code RCLPSGKACAGVTQKIPCCGSCVRGKCS _entity_poly.pdbx_seq_one_letter_code_can RCLPSGKACAGVTQKIPCCGSCVRGKCS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 CYS n 1 3 LEU n 1 4 PRO n 1 5 SER n 1 6 GLY n 1 7 LYS n 1 8 ALA n 1 9 CYS n 1 10 ALA n 1 11 GLY n 1 12 VAL n 1 13 THR n 1 14 GLN n 1 15 LYS n 1 16 ILE n 1 17 PRO n 1 18 CYS n 1 19 CYS n 1 20 GLY n 1 21 SER n 1 22 CYS n 1 23 VAL n 1 24 ARG n 1 25 GLY n 1 26 LYS n 1 27 CYS n 1 28 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This peptide was chemically synthesized. This sequence occurs naturally in Coremiocnemis validus.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 1 1 ARG ARG A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 CYS 18 18 18 CYS CYS A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 SER 28 28 28 SER SER A . n # _exptl.entry_id 1V5A _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1V5A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1V5A _struct.title 'Solution Structure of Covalitoxin I' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1V5A _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'TOXIN, VENOM OF CORECNEMIUS VALIDUS, DISULFIDE BOND' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1V5A _struct_ref.pdbx_db_accession 1V5A _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1V5A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 28 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1V5A _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 28 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 28 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 19 SG ? ? A CYS 2 A CYS 19 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf2 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 22 SG ? ? A CYS 9 A CYS 22 1_555 ? ? ? ? ? ? ? 2.020 ? ? disulf3 disulf ? ? A CYS 18 SG ? ? ? 1_555 A CYS 27 SG ? ? A CYS 18 A CYS 27 1_555 ? ? ? ? ? ? ? 2.020 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 2 ? CYS A 19 ? CYS A 2 ? 1_555 CYS A 19 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 9 ? CYS A 22 ? CYS A 9 ? 1_555 CYS A 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 18 ? CYS A 27 ? CYS A 18 ? 1_555 CYS A 27 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 22 ? VAL A 23 ? CYS A 22 VAL A 23 A 2 LYS A 26 ? CYS A 27 ? LYS A 26 CYS A 27 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 23 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 23 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id LYS _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 26 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 26 # _pdbx_entry_details.entry_id 1V5A _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? -40.11 159.73 2 1 VAL A 12 ? ? -39.28 -28.86 3 1 THR A 13 ? ? -89.78 38.64 4 2 SER A 5 ? ? -40.58 157.30 5 2 CYS A 9 ? ? -147.37 45.41 6 2 ALA A 10 ? ? -103.84 61.72 7 3 CYS A 2 ? ? -176.96 145.67 8 3 SER A 5 ? ? -39.32 161.66 9 3 ALA A 8 ? ? -43.20 165.64 10 3 CYS A 27 ? ? -67.92 94.45 11 4 SER A 5 ? ? -39.68 162.23 12 4 ALA A 8 ? ? -40.52 160.72 13 5 SER A 5 ? ? -39.62 161.05 14 5 ALA A 10 ? ? -107.22 68.16 15 5 VAL A 12 ? ? -36.60 -33.41 16 5 THR A 13 ? ? -88.46 42.73 17 6 SER A 5 ? ? -38.70 156.82 18 6 ALA A 10 ? ? -110.27 63.14 19 6 GLN A 14 ? ? -37.15 158.10 20 6 CYS A 27 ? ? -69.92 81.04 21 7 CYS A 2 ? ? 175.39 145.43 22 7 SER A 5 ? ? -39.28 153.48 23 7 THR A 13 ? ? -137.16 -30.19 24 8 SER A 5 ? ? -38.73 151.01 25 8 CYS A 9 ? ? -160.72 73.02 26 8 ALA A 10 ? ? -119.28 72.17 27 8 VAL A 12 ? ? 81.49 -30.88 28 8 GLN A 14 ? ? -41.34 160.36 29 9 ALA A 8 ? ? -59.70 103.23 30 9 ALA A 10 ? ? -118.66 64.00 31 9 THR A 13 ? ? -88.29 38.01 32 10 CYS A 2 ? ? 46.14 140.70 33 10 SER A 5 ? ? -43.65 151.24 34 10 PRO A 17 ? ? -78.28 -165.78 35 10 CYS A 27 ? ? -52.90 107.17 36 11 SER A 5 ? ? -39.46 158.35 37 11 CYS A 9 ? ? -123.59 -91.06 38 11 ALA A 10 ? ? -162.27 -135.42 39 11 VAL A 12 ? ? -149.98 -39.16 40 12 CYS A 2 ? ? 174.32 138.90 41 12 SER A 5 ? ? -38.49 152.93 42 12 ALA A 8 ? ? -42.03 160.10 43 12 ARG A 24 ? ? 36.93 30.43 44 13 CYS A 2 ? ? -35.45 147.78 45 13 SER A 5 ? ? -39.71 164.42 46 13 ALA A 8 ? ? -47.57 169.09 47 13 VAL A 12 ? ? 174.12 -33.89 48 13 GLN A 14 ? ? -56.89 173.87 49 14 CYS A 2 ? ? -174.34 146.97 50 14 SER A 5 ? ? -40.88 168.52 51 14 CYS A 9 ? ? -115.67 -85.98 52 14 ALA A 10 ? ? -162.08 -137.69 53 14 VAL A 12 ? ? -168.70 -33.11 54 15 CYS A 2 ? ? -177.53 145.22 55 15 SER A 5 ? ? -42.60 169.28 56 15 ALA A 8 ? ? -39.19 145.05 57 15 CYS A 9 ? ? -119.91 59.90 58 15 ARG A 24 ? ? 10.28 44.58 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 1 ? ? 0.271 'SIDE CHAIN' 2 1 ARG A 24 ? ? 0.304 'SIDE CHAIN' 3 2 ARG A 1 ? ? 0.301 'SIDE CHAIN' 4 2 ARG A 24 ? ? 0.157 'SIDE CHAIN' 5 3 ARG A 1 ? ? 0.290 'SIDE CHAIN' 6 3 ARG A 24 ? ? 0.289 'SIDE CHAIN' 7 4 ARG A 1 ? ? 0.253 'SIDE CHAIN' 8 4 ARG A 24 ? ? 0.315 'SIDE CHAIN' 9 5 ARG A 24 ? ? 0.295 'SIDE CHAIN' 10 6 ARG A 1 ? ? 0.170 'SIDE CHAIN' 11 6 ARG A 24 ? ? 0.134 'SIDE CHAIN' 12 7 ARG A 1 ? ? 0.281 'SIDE CHAIN' 13 7 ARG A 24 ? ? 0.221 'SIDE CHAIN' 14 8 ARG A 1 ? ? 0.315 'SIDE CHAIN' 15 8 ARG A 24 ? ? 0.157 'SIDE CHAIN' 16 9 ARG A 24 ? ? 0.255 'SIDE CHAIN' 17 10 ARG A 1 ? ? 0.317 'SIDE CHAIN' 18 10 ARG A 24 ? ? 0.317 'SIDE CHAIN' 19 11 ARG A 1 ? ? 0.239 'SIDE CHAIN' 20 11 ARG A 24 ? ? 0.316 'SIDE CHAIN' 21 12 ARG A 1 ? ? 0.311 'SIDE CHAIN' 22 12 ARG A 24 ? ? 0.245 'SIDE CHAIN' 23 13 ARG A 1 ? ? 0.109 'SIDE CHAIN' 24 13 ARG A 24 ? ? 0.297 'SIDE CHAIN' 25 14 ARG A 1 ? ? 0.314 'SIDE CHAIN' 26 14 ARG A 24 ? ? 0.145 'SIDE CHAIN' 27 15 ARG A 1 ? ? 0.311 'SIDE CHAIN' 28 15 ARG A 24 ? ? 0.160 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 1V5A _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1V5A _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '5mM Covalitoxin-I; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 5.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 DQF-COSY 3 1 1 '2D TOCSY' 4 1 1 PE-COSY # _pdbx_nmr_details.entry_id 1V5A _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques.' # _pdbx_nmr_refine.entry_id 1V5A _pdbx_nmr_refine.method 'distance geometry, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.6 collection Bruker 1 XwinNMR 2.6 'data analysis' Bruker 2 X-PLOR 3.1 refinement ? 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 CYS N N N N 41 CYS CA C N R 42 CYS C C N N 43 CYS O O N N 44 CYS CB C N N 45 CYS SG S N N 46 CYS OXT O N N 47 CYS H H N N 48 CYS H2 H N N 49 CYS HA H N N 50 CYS HB2 H N N 51 CYS HB3 H N N 52 CYS HG H N N 53 CYS HXT H N N 54 GLN N N N N 55 GLN CA C N S 56 GLN C C N N 57 GLN O O N N 58 GLN CB C N N 59 GLN CG C N N 60 GLN CD C N N 61 GLN OE1 O N N 62 GLN NE2 N N N 63 GLN OXT O N N 64 GLN H H N N 65 GLN H2 H N N 66 GLN HA H N N 67 GLN HB2 H N N 68 GLN HB3 H N N 69 GLN HG2 H N N 70 GLN HG3 H N N 71 GLN HE21 H N N 72 GLN HE22 H N N 73 GLN HXT H N N 74 GLY N N N N 75 GLY CA C N N 76 GLY C C N N 77 GLY O O N N 78 GLY OXT O N N 79 GLY H H N N 80 GLY H2 H N N 81 GLY HA2 H N N 82 GLY HA3 H N N 83 GLY HXT H N N 84 ILE N N N N 85 ILE CA C N S 86 ILE C C N N 87 ILE O O N N 88 ILE CB C N S 89 ILE CG1 C N N 90 ILE CG2 C N N 91 ILE CD1 C N N 92 ILE OXT O N N 93 ILE H H N N 94 ILE H2 H N N 95 ILE HA H N N 96 ILE HB H N N 97 ILE HG12 H N N 98 ILE HG13 H N N 99 ILE HG21 H N N 100 ILE HG22 H N N 101 ILE HG23 H N N 102 ILE HD11 H N N 103 ILE HD12 H N N 104 ILE HD13 H N N 105 ILE HXT H N N 106 LEU N N N N 107 LEU CA C N S 108 LEU C C N N 109 LEU O O N N 110 LEU CB C N N 111 LEU CG C N N 112 LEU CD1 C N N 113 LEU CD2 C N N 114 LEU OXT O N N 115 LEU H H N N 116 LEU H2 H N N 117 LEU HA H N N 118 LEU HB2 H N N 119 LEU HB3 H N N 120 LEU HG H N N 121 LEU HD11 H N N 122 LEU HD12 H N N 123 LEU HD13 H N N 124 LEU HD21 H N N 125 LEU HD22 H N N 126 LEU HD23 H N N 127 LEU HXT H N N 128 LYS N N N N 129 LYS CA C N S 130 LYS C C N N 131 LYS O O N N 132 LYS CB C N N 133 LYS CG C N N 134 LYS CD C N N 135 LYS CE C N N 136 LYS NZ N N N 137 LYS OXT O N N 138 LYS H H N N 139 LYS H2 H N N 140 LYS HA H N N 141 LYS HB2 H N N 142 LYS HB3 H N N 143 LYS HG2 H N N 144 LYS HG3 H N N 145 LYS HD2 H N N 146 LYS HD3 H N N 147 LYS HE2 H N N 148 LYS HE3 H N N 149 LYS HZ1 H N N 150 LYS HZ2 H N N 151 LYS HZ3 H N N 152 LYS HXT H N N 153 PRO N N N N 154 PRO CA C N S 155 PRO C C N N 156 PRO O O N N 157 PRO CB C N N 158 PRO CG C N N 159 PRO CD C N N 160 PRO OXT O N N 161 PRO H H N N 162 PRO HA H N N 163 PRO HB2 H N N 164 PRO HB3 H N N 165 PRO HG2 H N N 166 PRO HG3 H N N 167 PRO HD2 H N N 168 PRO HD3 H N N 169 PRO HXT H N N 170 SER N N N N 171 SER CA C N S 172 SER C C N N 173 SER O O N N 174 SER CB C N N 175 SER OG O N N 176 SER OXT O N N 177 SER H H N N 178 SER H2 H N N 179 SER HA H N N 180 SER HB2 H N N 181 SER HB3 H N N 182 SER HG H N N 183 SER HXT H N N 184 THR N N N N 185 THR CA C N S 186 THR C C N N 187 THR O O N N 188 THR CB C N R 189 THR OG1 O N N 190 THR CG2 C N N 191 THR OXT O N N 192 THR H H N N 193 THR H2 H N N 194 THR HA H N N 195 THR HB H N N 196 THR HG1 H N N 197 THR HG21 H N N 198 THR HG22 H N N 199 THR HG23 H N N 200 THR HXT H N N 201 VAL N N N N 202 VAL CA C N S 203 VAL C C N N 204 VAL O O N N 205 VAL CB C N N 206 VAL CG1 C N N 207 VAL CG2 C N N 208 VAL OXT O N N 209 VAL H H N N 210 VAL H2 H N N 211 VAL HA H N N 212 VAL HB H N N 213 VAL HG11 H N N 214 VAL HG12 H N N 215 VAL HG13 H N N 216 VAL HG21 H N N 217 VAL HG22 H N N 218 VAL HG23 H N N 219 VAL HXT H N N 220 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 CYS N CA sing N N 39 CYS N H sing N N 40 CYS N H2 sing N N 41 CYS CA C sing N N 42 CYS CA CB sing N N 43 CYS CA HA sing N N 44 CYS C O doub N N 45 CYS C OXT sing N N 46 CYS CB SG sing N N 47 CYS CB HB2 sing N N 48 CYS CB HB3 sing N N 49 CYS SG HG sing N N 50 CYS OXT HXT sing N N 51 GLN N CA sing N N 52 GLN N H sing N N 53 GLN N H2 sing N N 54 GLN CA C sing N N 55 GLN CA CB sing N N 56 GLN CA HA sing N N 57 GLN C O doub N N 58 GLN C OXT sing N N 59 GLN CB CG sing N N 60 GLN CB HB2 sing N N 61 GLN CB HB3 sing N N 62 GLN CG CD sing N N 63 GLN CG HG2 sing N N 64 GLN CG HG3 sing N N 65 GLN CD OE1 doub N N 66 GLN CD NE2 sing N N 67 GLN NE2 HE21 sing N N 68 GLN NE2 HE22 sing N N 69 GLN OXT HXT sing N N 70 GLY N CA sing N N 71 GLY N H sing N N 72 GLY N H2 sing N N 73 GLY CA C sing N N 74 GLY CA HA2 sing N N 75 GLY CA HA3 sing N N 76 GLY C O doub N N 77 GLY C OXT sing N N 78 GLY OXT HXT sing N N 79 ILE N CA sing N N 80 ILE N H sing N N 81 ILE N H2 sing N N 82 ILE CA C sing N N 83 ILE CA CB sing N N 84 ILE CA HA sing N N 85 ILE C O doub N N 86 ILE C OXT sing N N 87 ILE CB CG1 sing N N 88 ILE CB CG2 sing N N 89 ILE CB HB sing N N 90 ILE CG1 CD1 sing N N 91 ILE CG1 HG12 sing N N 92 ILE CG1 HG13 sing N N 93 ILE CG2 HG21 sing N N 94 ILE CG2 HG22 sing N N 95 ILE CG2 HG23 sing N N 96 ILE CD1 HD11 sing N N 97 ILE CD1 HD12 sing N N 98 ILE CD1 HD13 sing N N 99 ILE OXT HXT sing N N 100 LEU N CA sing N N 101 LEU N H sing N N 102 LEU N H2 sing N N 103 LEU CA C sing N N 104 LEU CA CB sing N N 105 LEU CA HA sing N N 106 LEU C O doub N N 107 LEU C OXT sing N N 108 LEU CB CG sing N N 109 LEU CB HB2 sing N N 110 LEU CB HB3 sing N N 111 LEU CG CD1 sing N N 112 LEU CG CD2 sing N N 113 LEU CG HG sing N N 114 LEU CD1 HD11 sing N N 115 LEU CD1 HD12 sing N N 116 LEU CD1 HD13 sing N N 117 LEU CD2 HD21 sing N N 118 LEU CD2 HD22 sing N N 119 LEU CD2 HD23 sing N N 120 LEU OXT HXT sing N N 121 LYS N CA sing N N 122 LYS N H sing N N 123 LYS N H2 sing N N 124 LYS CA C sing N N 125 LYS CA CB sing N N 126 LYS CA HA sing N N 127 LYS C O doub N N 128 LYS C OXT sing N N 129 LYS CB CG sing N N 130 LYS CB HB2 sing N N 131 LYS CB HB3 sing N N 132 LYS CG CD sing N N 133 LYS CG HG2 sing N N 134 LYS CG HG3 sing N N 135 LYS CD CE sing N N 136 LYS CD HD2 sing N N 137 LYS CD HD3 sing N N 138 LYS CE NZ sing N N 139 LYS CE HE2 sing N N 140 LYS CE HE3 sing N N 141 LYS NZ HZ1 sing N N 142 LYS NZ HZ2 sing N N 143 LYS NZ HZ3 sing N N 144 LYS OXT HXT sing N N 145 PRO N CA sing N N 146 PRO N CD sing N N 147 PRO N H sing N N 148 PRO CA C sing N N 149 PRO CA CB sing N N 150 PRO CA HA sing N N 151 PRO C O doub N N 152 PRO C OXT sing N N 153 PRO CB CG sing N N 154 PRO CB HB2 sing N N 155 PRO CB HB3 sing N N 156 PRO CG CD sing N N 157 PRO CG HG2 sing N N 158 PRO CG HG3 sing N N 159 PRO CD HD2 sing N N 160 PRO CD HD3 sing N N 161 PRO OXT HXT sing N N 162 SER N CA sing N N 163 SER N H sing N N 164 SER N H2 sing N N 165 SER CA C sing N N 166 SER CA CB sing N N 167 SER CA HA sing N N 168 SER C O doub N N 169 SER C OXT sing N N 170 SER CB OG sing N N 171 SER CB HB2 sing N N 172 SER CB HB3 sing N N 173 SER OG HG sing N N 174 SER OXT HXT sing N N 175 THR N CA sing N N 176 THR N H sing N N 177 THR N H2 sing N N 178 THR CA C sing N N 179 THR CA CB sing N N 180 THR CA HA sing N N 181 THR C O doub N N 182 THR C OXT sing N N 183 THR CB OG1 sing N N 184 THR CB CG2 sing N N 185 THR CB HB sing N N 186 THR OG1 HG1 sing N N 187 THR CG2 HG21 sing N N 188 THR CG2 HG22 sing N N 189 THR CG2 HG23 sing N N 190 THR OXT HXT sing N N 191 VAL N CA sing N N 192 VAL N H sing N N 193 VAL N H2 sing N N 194 VAL CA C sing N N 195 VAL CA CB sing N N 196 VAL CA HA sing N N 197 VAL C O doub N N 198 VAL C OXT sing N N 199 VAL CB CG1 sing N N 200 VAL CB CG2 sing N N 201 VAL CB HB sing N N 202 VAL CG1 HG11 sing N N 203 VAL CG1 HG12 sing N N 204 VAL CG1 HG13 sing N N 205 VAL CG2 HG21 sing N N 206 VAL CG2 HG22 sing N N 207 VAL CG2 HG23 sing N N 208 VAL OXT HXT sing N N 209 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.field_strength 500 # _atom_sites.entry_id 1V5A _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_