HEADER PROTEIN BINDING 25-NOV-03 1V5Q TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM MOUSE GLUTAMATE RECEPTOR TITLE 2 INTERACTING PROTEIN 1A-L (GRIP1) HOMOLOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR INTERACTING PROTEIN 1A-L HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: GRIP1 HOMOLOG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 4931400F03; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030203-74; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, CELLULAR SIGNALING, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1V5Q 1 REMARK REVDAT 3 02-MAR-22 1V5Q 1 REMARK SEQADV REVDAT 2 24-FEB-09 1V5Q 1 VERSN REVDAT 1 25-MAY-04 1V5Q 0 JRNL AUTH M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM MOUSE GLUTAMATE JRNL TITL 2 RECEPTOR INTERACTING PROTEIN 1A-L (GRIP1) HOMOLOG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V5Q COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000006239. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.59MM PDZ DOMAIN U-15N, 13C; REMARK 210 20MM PHOSPHATE BUFFER NA; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.863, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 92 H ILE A 95 1.55 REMARK 500 H MET A 71 O GLU A 102 1.59 REMARK 500 O GLU A 84 H GLN A 88 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 105.31 -44.31 REMARK 500 1 ALA A 23 99.74 -45.27 REMARK 500 1 VAL A 26 -60.57 -141.66 REMARK 500 1 THR A 27 69.22 -103.80 REMARK 500 1 ALA A 39 -169.79 -165.74 REMARK 500 1 GLU A 41 -51.83 -151.02 REMARK 500 1 THR A 42 -133.23 -108.94 REMARK 500 1 SER A 45 151.71 177.61 REMARK 500 1 ILE A 49 99.55 -64.43 REMARK 500 1 GLU A 53 153.31 -49.99 REMARK 500 1 ASP A 68 -176.43 -64.41 REMARK 500 1 THR A 78 84.76 -61.04 REMARK 500 1 GLU A 79 47.20 -171.71 REMARK 500 1 ASP A 80 176.68 172.88 REMARK 500 1 SER A 81 -163.88 70.90 REMARK 500 1 SER A 110 103.24 -59.71 REMARK 500 2 SER A 2 81.93 -153.06 REMARK 500 2 SER A 6 87.96 -66.05 REMARK 500 2 ALA A 23 100.19 -45.05 REMARK 500 2 VAL A 26 -60.03 -141.40 REMARK 500 2 THR A 27 69.63 -104.32 REMARK 500 2 ALA A 39 -163.33 -175.13 REMARK 500 2 THR A 40 -77.66 -127.26 REMARK 500 2 THR A 42 -134.19 -125.95 REMARK 500 2 SER A 44 33.01 38.87 REMARK 500 2 GLU A 53 153.16 -49.99 REMARK 500 2 ASP A 68 -168.67 -56.33 REMARK 500 2 ASN A 74 13.10 82.40 REMARK 500 2 GLU A 79 38.56 178.13 REMARK 500 2 ASP A 80 58.22 -166.83 REMARK 500 2 SER A 81 -171.70 -179.86 REMARK 500 2 SER A 93 -38.36 -39.44 REMARK 500 2 SER A 117 122.67 -174.93 REMARK 500 3 SER A 2 102.44 54.97 REMARK 500 3 SER A 3 95.06 -162.30 REMARK 500 3 ALA A 23 99.39 -42.79 REMARK 500 3 VAL A 26 -60.91 -140.61 REMARK 500 3 THR A 27 69.38 -104.60 REMARK 500 3 ALA A 39 -174.42 169.59 REMARK 500 3 THR A 40 -78.15 -76.40 REMARK 500 3 THR A 42 -135.99 -122.82 REMARK 500 3 SER A 44 38.60 38.72 REMARK 500 3 SER A 45 170.01 173.08 REMARK 500 3 ASP A 55 23.56 49.48 REMARK 500 3 ASP A 68 -175.98 -59.38 REMARK 500 3 VAL A 70 90.22 -58.48 REMARK 500 3 GLU A 79 64.39 -172.85 REMARK 500 3 ASP A 80 -44.84 176.66 REMARK 500 3 ILE A 95 -72.49 -54.70 REMARK 500 3 SER A 110 99.75 -65.85 REMARK 500 REMARK 500 THIS ENTRY HAS 375 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007011047.1 RELATED DB: TARGETDB DBREF 1V5Q A 8 116 GB 26325828 BAC26668 46 154 SEQADV 1V5Q GLY A 1 GB 26325828 CLONING ARTIFACT SEQADV 1V5Q SER A 2 GB 26325828 CLONING ARTIFACT SEQADV 1V5Q SER A 3 GB 26325828 CLONING ARTIFACT SEQADV 1V5Q GLY A 4 GB 26325828 CLONING ARTIFACT SEQADV 1V5Q SER A 5 GB 26325828 CLONING ARTIFACT SEQADV 1V5Q SER A 6 GB 26325828 CLONING ARTIFACT SEQADV 1V5Q GLY A 7 GB 26325828 CLONING ARTIFACT SEQADV 1V5Q SER A 117 GB 26325828 CLONING ARTIFACT SEQADV 1V5Q GLY A 118 GB 26325828 CLONING ARTIFACT SEQADV 1V5Q PRO A 119 GB 26325828 CLONING ARTIFACT SEQADV 1V5Q SER A 120 GB 26325828 CLONING ARTIFACT SEQADV 1V5Q SER A 121 GB 26325828 CLONING ARTIFACT SEQADV 1V5Q GLY A 122 GB 26325828 CLONING ARTIFACT SEQRES 1 A 122 GLY SER SER GLY SER SER GLY ALA GLY GLN VAL VAL HIS SEQRES 2 A 122 THR GLU THR THR GLU VAL VAL LEU THR ALA ASP PRO VAL SEQRES 3 A 122 THR GLY PHE GLY ILE GLN LEU GLN GLY SER VAL PHE ALA SEQRES 4 A 122 THR GLU THR LEU SER SER PRO PRO LEU ILE SER TYR ILE SEQRES 5 A 122 GLU ALA ASP SER PRO ALA GLU ARG CYS GLY VAL LEU GLN SEQRES 6 A 122 ILE GLY ASP ARG VAL MET ALA ILE ASN GLY ILE PRO THR SEQRES 7 A 122 GLU ASP SER THR PHE GLU GLU ALA ASN GLN LEU LEU ARG SEQRES 8 A 122 ASP SER SER ILE THR SER LYS VAL THR LEU GLU ILE GLU SEQRES 9 A 122 PHE ASP VAL ALA GLU SER VAL ILE PRO SER SER GLY SER SEQRES 10 A 122 GLY PRO SER SER GLY HELIX 1 1 PRO A 57 CYS A 61 1 5 HELIX 2 2 THR A 82 SER A 94 1 13 SHEET 1 A 4 THR A 14 LEU A 21 0 SHEET 2 A 4 VAL A 99 ASP A 106 -1 O ILE A 103 N THR A 17 SHEET 3 A 4 VAL A 70 ILE A 73 -1 N ALA A 72 O GLU A 102 SHEET 4 A 4 ILE A 76 PRO A 77 -1 O ILE A 76 N ILE A 73 SHEET 1 B 2 ILE A 31 GLN A 34 0 SHEET 2 B 2 LEU A 48 ILE A 52 -1 O LEU A 48 N GLN A 34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1