HEADER LYASE 09-DEC-03 1V72 TITLE CRYSTAL STRUCTURE OF PHENYLSERINE ALDOLASE FROM PSEUDOMONAS PUTIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.2.26; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLP-DEPENDENT ENZYME, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.OMI REVDAT 4 27-DEC-23 1V72 1 REMARK LINK REVDAT 3 13-JUL-11 1V72 1 VERSN REVDAT 2 24-FEB-09 1V72 1 VERSN REVDAT 1 01-MAR-05 1V72 0 JRNL AUTH R.OMI,I.MIYAHARA,H.MISONO,K.HIROTSU JRNL TITL CRYSTAL STRUCTURE OF PHENYLSERINE ALDOLASE FROM PSEUDOMONAS JRNL TITL 2 PUTIDA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 31529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3159 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4659 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 510 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.290 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.030 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.550 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 20.240; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 16.030; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.41 REMARK 3 BSOL : 58.80 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : PARAM.ETC REMARK 3 PARAMETER FILE 4 : PARAM.PLP REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : TOP.PLP REMARK 3 TOPOLOGY FILE 4 : INTSHIFF.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESOLUTION-DEPENDENT WEIGHTING SCHEME REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 1V72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000006287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31555 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, PEGMME 550, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.74450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.74450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.55750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.74450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.74450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.55750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.74450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.74450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.55750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.74450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.74450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.55750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 16220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 95.48900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 95.48900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 107.11500 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 95.48900 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 95.48900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 107.11500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 ASP A 351 REMARK 465 ARG A 352 REMARK 465 THR A 353 REMARK 465 GLN A 354 REMARK 465 GLU A 355 REMARK 465 ARG A 356 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 ASP A 319 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 149 C ALA A 150 N 0.230 REMARK 500 GLU A 281 C GLY A 282 N -0.189 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 148 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 GLN A 149 O - C - N ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 150 151.38 -46.74 REMARK 500 THR A 198 -103.27 -128.46 REMARK 500 ALA A 210 -33.99 -131.19 REMARK 500 ALA A 217 91.71 -170.72 REMARK 500 ALA A 218 117.12 -168.34 REMARK 500 ALA A 294 -127.92 -130.71 REMARK 500 HIS A 318 13.28 -150.91 REMARK 500 TRP A 321 -131.12 -124.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 149 ALA A 150 -46.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 149 -24.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 163 OE2 REMARK 620 2 GLU A 163 OE1 56.0 REMARK 620 3 ASP A 167 OD2 119.8 127.6 REMARK 620 4 HIS A 341 ND1 87.5 110.0 122.3 REMARK 620 5 HOH A 719 O 141.2 85.5 85.4 103.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 513 DBREF 1V72 A 1 356 UNP Q59IT3 Q59IT3_PSEPU 2 357 SEQRES 1 A 356 ASN GLY GLU THR SER ARG PRO PRO ALA LEU GLY PHE SER SEQRES 2 A 356 SER ASP ASN ILE ALA GLY ALA SER PRO GLU VAL ALA GLN SEQRES 3 A 356 ALA LEU VAL LYS HIS SER SER GLY GLN ALA GLY PRO TYR SEQRES 4 A 356 GLY THR ASP GLU LEU THR ALA GLN VAL LYS ARG LYS PHE SEQRES 5 A 356 CYS GLU ILE PHE GLU ARG ASP VAL GLU VAL PHE LEU VAL SEQRES 6 A 356 PRO THR GLY THR ALA ALA ASN ALA LEU CYS LEU SER ALA SEQRES 7 A 356 MET THR PRO PRO TRP GLY ASN ILE TYR CYS HIS PRO ALA SEQRES 8 A 356 SER HIS ILE ASN ASN ASP GLU CYS GLY ALA PRO GLU PHE SEQRES 9 A 356 PHE SER ASN GLY ALA LYS LEU MET THR VAL ASP GLY PRO SEQRES 10 A 356 ALA ALA LYS LEU ASP ILE VAL ARG LEU ARG GLU ARG THR SEQRES 11 A 356 ARG GLU LYS VAL GLY ASP VAL HIS THR THR GLN PRO ALA SEQRES 12 A 356 CYS VAL SER ILE THR GLN ALA THR GLU VAL GLY SER ILE SEQRES 13 A 356 TYR THR LEU ASP GLU ILE GLU ALA ILE GLY ASP VAL CYS SEQRES 14 A 356 LYS SER SER SER LEU GLY LEU HIS MET ASP GLY SER ARG SEQRES 15 A 356 PHE ALA ASN ALA LEU VAL SER LEU GLY CYS SER PRO ALA SEQRES 16 A 356 GLU MET THR TRP LYS ALA GLY VAL ASP ALA LEU SER PHE SEQRES 17 A 356 GLY ALA THR LYS ASN GLY VAL LEU ALA ALA GLU ALA ILE SEQRES 18 A 356 VAL LEU PHE ASN THR SER LEU ALA THR GLU MET SER TYR SEQRES 19 A 356 ARG ARG LYS ARG ALA GLY HIS LEU SER SER LYS MET ARG SEQRES 20 A 356 PHE LEU SER ALA GLN ILE ASP ALA TYR LEU THR ASP ASP SEQRES 21 A 356 LEU TRP LEU ARG ASN ALA ARG LYS ALA ASN ALA ALA ALA SEQRES 22 A 356 GLN ARG LEU ALA GLN GLY LEU GLU GLY LEU GLY GLY VAL SEQRES 23 A 356 GLU VAL LEU GLY GLY THR GLU ALA ASN ILE LEU PHE CYS SEQRES 24 A 356 ARG LEU ASP SER ALA MET ILE ASP ALA LEU LEU LYS ALA SEQRES 25 A 356 GLY PHE GLY PHE TYR HIS ASP ARG TRP GLY PRO ASN VAL SEQRES 26 A 356 VAL ARG PHE VAL THR SER PHE ALA THR THR ALA GLU ASP SEQRES 27 A 356 VAL ASP HIS LEU LEU ASN GLN VAL ARG LEU ALA ALA ASP SEQRES 28 A 356 ARG THR GLN GLU ARG HET ZN A 401 1 HET PLP A 513 15 HETNAM ZN ZINC ION HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 2 ZN ZN 2+ FORMUL 3 PLP C8 H10 N O6 P FORMUL 4 HOH *206(H2 O) HELIX 1 1 SER A 14 ALA A 18 5 5 HELIX 2 2 SER A 21 HIS A 31 1 11 HELIX 3 3 ASP A 42 GLU A 57 1 16 HELIX 4 4 THR A 67 ALA A 78 1 12 HELIX 5 5 SER A 92 ASP A 97 1 6 HELIX 6 6 GLY A 100 SER A 106 1 7 HELIX 7 7 GLY A 116 LYS A 120 5 5 HELIX 8 8 ASP A 122 THR A 130 1 9 HELIX 9 9 THR A 158 SER A 172 1 15 HELIX 10 10 ARG A 182 GLY A 191 1 10 HELIX 11 11 THR A 198 GLY A 202 5 5 HELIX 12 12 ALA A 210 GLY A 214 5 5 HELIX 13 13 ASN A 225 SER A 227 5 3 HELIX 14 14 LEU A 228 ALA A 239 1 12 HELIX 15 15 MET A 246 LEU A 257 1 12 HELIX 16 16 ASP A 260 GLU A 281 1 22 HELIX 17 17 ASP A 302 ALA A 312 1 11 HELIX 18 18 THR A 335 ALA A 349 1 15 SHEET 1 A 7 GLU A 61 VAL A 65 0 SHEET 2 A 7 GLU A 219 LEU A 223 -1 O LEU A 223 N GLU A 61 SHEET 3 A 7 ALA A 205 PHE A 208 -1 N PHE A 208 O ALA A 220 SHEET 4 A 7 GLY A 175 GLY A 180 1 N MET A 178 O SER A 207 SHEET 5 A 7 GLN A 141 THR A 148 1 N VAL A 145 O HIS A 177 SHEET 6 A 7 GLY A 84 CYS A 88 1 N TYR A 87 O SER A 146 SHEET 7 A 7 LYS A 110 THR A 113 1 O LYS A 110 N ILE A 86 SHEET 1 B 3 VAL A 286 LEU A 289 0 SHEET 2 B 3 ILE A 296 LEU A 301 -1 O ARG A 300 N GLU A 287 SHEET 3 B 3 VAL A 325 VAL A 329 -1 O VAL A 326 N CYS A 299 LINK NZ LYS A 212 C4A PLP A 513 1555 1555 1.36 LINK OE2 GLU A 163 ZN ZN A 401 1555 1555 2.49 LINK OE1 GLU A 163 ZN ZN A 401 1555 1555 2.15 LINK OD2 ASP A 167 ZN ZN A 401 1555 1555 2.07 LINK ND1 HIS A 341 ZN ZN A 401 5646 1555 2.22 LINK ZN ZN A 401 O HOH A 719 1555 1555 2.05 SITE 1 AC1 4 GLU A 163 ASP A 167 HIS A 341 HOH A 719 SITE 1 AC2 15 TYR A 39 THR A 67 GLY A 68 THR A 69 SITE 2 AC2 15 HIS A 93 THR A 148 GLU A 152 ASP A 179 SITE 3 AC2 15 SER A 181 ARG A 182 LYS A 212 SER A 244 SITE 4 AC2 15 HOH A 544 HOH A 599 HOH A 642 CRYST1 95.489 95.489 107.115 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010472 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009336 0.00000