data_1V9H # _entry.id 1V9H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1V9H pdb_00001v9h 10.2210/pdb1v9h/pdb RCSB RCSB006374 ? ? WWPDB D_1000006374 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1V9H _pdbx_database_status.recvd_initial_deposition_date 2004-01-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kimura, K.' 1 'Numata, T.' 2 'Kakuta, Y.' 3 'Kimura, M.' 4 # _citation.id primary _citation.title 'Amino acids conserved at the C-terminal half of the ribonuclease t2 family contribute to protein stability of the enzymes' _citation.journal_abbrev Biosci.Biotechnol.Biochem. _citation.journal_volume 68 _citation.page_first 1748 _citation.page_last 1757 _citation.year 2004 _citation.journal_id_ASTM BBBIEJ _citation.country JA _citation.journal_id_ISSN 0916-8451 _citation.journal_id_CSD 2094 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15322360 _citation.pdbx_database_id_DOI 10.1271/bbb.68.1748 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kimura, K.' 1 ? primary 'Numata, T.' 2 ? primary 'Kakuta, Y.' 3 ? primary 'Kimura, M.' 4 ? # _cell.entry_id 1V9H _cell.length_a 52.675 _cell.length_b 61.996 _cell.length_c 76.393 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V9H _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribonuclease MC' 21927.703 1 3.1.27.1 Y101A ? ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 non-polymer syn "URIDINE-5'-MONOPHOSPHATE" 324.181 1 ? ? ? ? 4 water nat water 18.015 112 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RIBONUCLEASE MC1, RNase MC' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EAEAYVEFDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISHLQSQLNTLWPNVL RANNQQFWSHEWTKHGTCSESTFNQAAAFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRT DPQTKVSYLVEVVACFAQDGSTLIDCTRDTCGANFIF ; _entity_poly.pdbx_seq_one_letter_code_can ;EAEAYVEFDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISHLQSQLNTLWPNVL RANNQQFWSHEWTKHGTCSESTFNQAAAFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRT DPQTKVSYLVEVVACFAQDGSTLIDCTRDTCGANFIF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ALA n 1 3 GLU n 1 4 ALA n 1 5 TYR n 1 6 VAL n 1 7 GLU n 1 8 PHE n 1 9 ASP n 1 10 SER n 1 11 PHE n 1 12 TRP n 1 13 PHE n 1 14 VAL n 1 15 GLN n 1 16 GLN n 1 17 TRP n 1 18 PRO n 1 19 PRO n 1 20 ALA n 1 21 VAL n 1 22 CYS n 1 23 SER n 1 24 PHE n 1 25 GLN n 1 26 LYS n 1 27 SER n 1 28 GLY n 1 29 SER n 1 30 CYS n 1 31 PRO n 1 32 GLY n 1 33 SER n 1 34 GLY n 1 35 LEU n 1 36 ARG n 1 37 THR n 1 38 PHE n 1 39 THR n 1 40 ILE n 1 41 HIS n 1 42 GLY n 1 43 LEU n 1 44 TRP n 1 45 PRO n 1 46 GLN n 1 47 GLN n 1 48 SER n 1 49 GLY n 1 50 THR n 1 51 SER n 1 52 LEU n 1 53 THR n 1 54 ASN n 1 55 CYS n 1 56 PRO n 1 57 GLY n 1 58 SER n 1 59 PRO n 1 60 PHE n 1 61 ASP n 1 62 ILE n 1 63 THR n 1 64 LYS n 1 65 ILE n 1 66 SER n 1 67 HIS n 1 68 LEU n 1 69 GLN n 1 70 SER n 1 71 GLN n 1 72 LEU n 1 73 ASN n 1 74 THR n 1 75 LEU n 1 76 TRP n 1 77 PRO n 1 78 ASN n 1 79 VAL n 1 80 LEU n 1 81 ARG n 1 82 ALA n 1 83 ASN n 1 84 ASN n 1 85 GLN n 1 86 GLN n 1 87 PHE n 1 88 TRP n 1 89 SER n 1 90 HIS n 1 91 GLU n 1 92 TRP n 1 93 THR n 1 94 LYS n 1 95 HIS n 1 96 GLY n 1 97 THR n 1 98 CYS n 1 99 SER n 1 100 GLU n 1 101 SER n 1 102 THR n 1 103 PHE n 1 104 ASN n 1 105 GLN n 1 106 ALA n 1 107 ALA n 1 108 ALA n 1 109 PHE n 1 110 LYS n 1 111 LEU n 1 112 ALA n 1 113 VAL n 1 114 ASP n 1 115 MET n 1 116 ARG n 1 117 ASN n 1 118 ASN n 1 119 TYR n 1 120 ASP n 1 121 ILE n 1 122 ILE n 1 123 GLY n 1 124 ALA n 1 125 LEU n 1 126 ARG n 1 127 PRO n 1 128 HIS n 1 129 ALA n 1 130 ALA n 1 131 GLY n 1 132 PRO n 1 133 ASN n 1 134 GLY n 1 135 ARG n 1 136 THR n 1 137 LYS n 1 138 SER n 1 139 ARG n 1 140 GLN n 1 141 ALA n 1 142 ILE n 1 143 LYS n 1 144 GLY n 1 145 PHE n 1 146 LEU n 1 147 LYS n 1 148 ALA n 1 149 LYS n 1 150 PHE n 1 151 GLY n 1 152 LYS n 1 153 PHE n 1 154 PRO n 1 155 GLY n 1 156 LEU n 1 157 ARG n 1 158 CYS n 1 159 ARG n 1 160 THR n 1 161 ASP n 1 162 PRO n 1 163 GLN n 1 164 THR n 1 165 LYS n 1 166 VAL n 1 167 SER n 1 168 TYR n 1 169 LEU n 1 170 VAL n 1 171 GLU n 1 172 VAL n 1 173 VAL n 1 174 ALA n 1 175 CYS n 1 176 PHE n 1 177 ALA n 1 178 GLN n 1 179 ASP n 1 180 GLY n 1 181 SER n 1 182 THR n 1 183 LEU n 1 184 ILE n 1 185 ASP n 1 186 CYS n 1 187 THR n 1 188 ARG n 1 189 ASP n 1 190 THR n 1 191 CYS n 1 192 GLY n 1 193 ALA n 1 194 ASN n 1 195 PHE n 1 196 ILE n 1 197 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'balsam pear' _entity_src_gen.gene_src_genus Momordica _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Momordica charantia' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3673 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus Pichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPIC9K _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RNMC_MOMCH _struct_ref.pdbx_db_accession P23540 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQGSGTSLTNCPQGSPFDITKISHLQSQLNTLWPNVLRANNQQ FWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKV SYLVQVVACFAQDGSTLIDCTRDTCGANFIF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1V9H _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 197 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P23540 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 191 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 190 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1V9H GLU A 1 ? UNP P23540 ? ? 'cloning artifact' -6 1 1 1V9H ALA A 2 ? UNP P23540 ? ? 'cloning artifact' -5 2 1 1V9H GLU A 3 ? UNP P23540 ? ? 'cloning artifact' -4 3 1 1V9H ALA A 4 ? UNP P23540 ? ? 'cloning artifact' -3 4 1 1V9H TYR A 5 ? UNP P23540 ? ? 'cloning artifact' -2 5 1 1V9H VAL A 6 ? UNP P23540 ? ? 'cloning artifact' -1 6 1 1V9H GLU A 7 ? UNP P23540 ? ? 'cloning artifact' 0 7 1 1V9H GLN A 47 ? UNP P23540 GLY 40 'SEE REMARK 999' 40 8 1 1V9H ? A ? ? UNP P23540 GLN 50 deletion ? 9 1 1V9H ALA A 108 ? UNP P23540 TYR 102 'engineered mutation' 101 10 1 1V9H GLU A 171 ? UNP P23540 GLN 165 'SEE REMARK 999' 164 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U5P non-polymer . "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1V9H _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_percent_sol 53.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '2.0M ammonium sulfate, 100mM sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-11-04 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8 # _reflns.entry_id 1V9H _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.0 _reflns.number_obs 17372 _reflns.number_all 17372 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.109 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.8 _reflns.B_iso_Wilson_estimate 13.9 _reflns.pdbx_redundancy 6.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.242 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.6 _reflns_shell.pdbx_redundancy 7.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1V9H _refine.ls_number_reflns_obs 16986 _refine.ls_number_reflns_all 16986 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 517784.42 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.20 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 97.2 _refine.ls_R_factor_obs 0.2099 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2099 _refine.ls_R_factor_R_free 0.2568 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 824 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 22.0 _refine.aniso_B[1][1] 2.51 _refine.aniso_B[2][2] -0.05 _refine.aniso_B[3][3] -2.47 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.398631 _refine.solvent_model_param_bsol 44.7098 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 1BK7' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1V9H _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.04 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.27 _refine_analyze.Luzzati_sigma_a_free 0.10 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1517 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 1665 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 38.20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.80 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 2601 _refine_ls_shell.R_factor_R_work 0.193 _refine_ls_shell.percent_reflns_obs 95.6 _refine_ls_shell.R_factor_R_free 0.266 _refine_ls_shell.R_factor_R_free_error 0.025 _refine_ls_shell.percent_reflns_R_free 4.1 _refine_ls_shell.number_reflns_R_free 112 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 SO4_XPLOR.PARAM SO4_XPLOR.TOP 'X-RAY DIFFRACTION' 4 U5P_XPLOR.PARAM U5P_XPLOR.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1V9H _struct.title ;Crystal structure of the RNase MC1 mutant Y101A in complex with 5'-UMP ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1V9H _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Hydolase, Nucleic acid, RNA, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TRP A 17 ? PHE A 24 ? TRP A 10 PHE A 17 1 ? 8 HELX_P HELX_P2 2 ASP A 61 ? SER A 66 ? ASP A 54 SER A 59 5 ? 6 HELX_P HELX_P3 3 LEU A 68 ? TRP A 76 ? LEU A 61 TRP A 69 1 ? 9 HELX_P HELX_P4 4 ASN A 83 ? HIS A 95 ? ASN A 76 HIS A 88 1 ? 13 HELX_P HELX_P5 5 GLY A 96 ? GLU A 100 ? GLY A 89 GLU A 93 5 ? 5 HELX_P HELX_P6 6 ASN A 104 ? ASN A 118 ? ASN A 97 ASN A 111 1 ? 15 HELX_P HELX_P7 7 ASP A 120 ? ARG A 126 ? ASP A 113 ARG A 119 1 ? 7 HELX_P HELX_P8 8 PRO A 127 ? ALA A 129 ? PRO A 120 ALA A 122 5 ? 3 HELX_P HELX_P9 9 ARG A 139 ? GLY A 151 ? ARG A 132 GLY A 144 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 30 SG ? ? A CYS 15 A CYS 23 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? A CYS 55 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 48 A CYS 91 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf3 disulf ? ? A CYS 158 SG ? ? ? 1_555 A CYS 191 SG ? ? A CYS 151 A CYS 184 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf4 disulf ? ? A CYS 175 SG ? ? ? 1_555 A CYS 186 SG ? ? A CYS 168 A CYS 179 1_555 ? ? ? ? ? ? ? 2.040 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 50 ? SER A 51 ? THR A 43 SER A 44 A 2 THR A 39 ? GLN A 47 ? THR A 32 GLN A 40 A 3 SER A 10 ? GLN A 16 ? SER A 3 GLN A 9 A 4 SER A 167 ? ALA A 177 ? SER A 160 ALA A 170 A 5 GLY A 155 ? THR A 160 ? GLY A 148 THR A 153 B 1 THR A 50 ? SER A 51 ? THR A 43 SER A 44 B 2 THR A 39 ? GLN A 47 ? THR A 32 GLN A 40 B 3 SER A 10 ? GLN A 16 ? SER A 3 GLN A 9 B 4 SER A 167 ? ALA A 177 ? SER A 160 ALA A 170 B 5 LEU A 183 ? ILE A 184 ? LEU A 176 ILE A 177 C 1 ARG A 135 ? SER A 138 ? ARG A 128 SER A 131 C 2 ASN A 194 ? PHE A 197 ? ASN A 187 PHE A 190 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 50 ? O THR A 43 N GLN A 47 ? N GLN A 40 A 2 3 O GLN A 46 ? O GLN A 39 N SER A 10 ? N SER A 3 A 3 4 N PHE A 13 ? N PHE A 6 O ALA A 174 ? O ALA A 167 A 4 5 O VAL A 173 ? O VAL A 166 N GLY A 155 ? N GLY A 148 B 1 2 O THR A 50 ? O THR A 43 N GLN A 47 ? N GLN A 40 B 2 3 O GLN A 46 ? O GLN A 39 N SER A 10 ? N SER A 3 B 3 4 N PHE A 13 ? N PHE A 6 O ALA A 174 ? O ALA A 167 B 4 5 N CYS A 175 ? N CYS A 168 O ILE A 184 ? O ILE A 177 C 1 2 N LYS A 137 ? N LYS A 130 O PHE A 195 ? O PHE A 188 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 301 ? 9 'BINDING SITE FOR RESIDUE SO4 A 301' AC2 Software A SO4 302 ? 6 'BINDING SITE FOR RESIDUE SO4 A 302' AC3 Software A SO4 303 ? 4 'BINDING SITE FOR RESIDUE SO4 A 303' AC4 Software A U5P 1001 ? 15 'BINDING SITE FOR RESIDUE U5P A 1001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 PRO A 59 ? PRO A 52 . ? 2_545 ? 2 AC1 9 PHE A 60 ? PHE A 53 . ? 2_545 ? 3 AC1 9 THR A 93 ? THR A 86 . ? 2_545 ? 4 AC1 9 ARG A 139 ? ARG A 132 . ? 1_555 ? 5 AC1 9 GLY A 192 ? GLY A 185 . ? 1_555 ? 6 AC1 9 ALA A 193 ? ALA A 186 . ? 1_555 ? 7 AC1 9 HOH F . ? HOH A 1030 . ? 2_545 ? 8 AC1 9 HOH F . ? HOH A 1043 . ? 2_545 ? 9 AC1 9 HOH F . ? HOH A 1068 . ? 2_545 ? 10 AC2 6 GLY A 42 ? GLY A 35 . ? 1_555 ? 11 AC2 6 LEU A 43 ? LEU A 36 . ? 1_555 ? 12 AC2 6 TRP A 76 ? TRP A 69 . ? 1_555 ? 13 AC2 6 GLU A 91 ? GLU A 84 . ? 1_555 ? 14 AC2 6 TRP A 92 ? TRP A 85 . ? 1_555 ? 15 AC2 6 GLY A 96 ? GLY A 89 . ? 1_555 ? 16 AC3 4 ASN A 54 ? ASN A 47 . ? 1_555 ? 17 AC3 4 HIS A 90 ? HIS A 83 . ? 1_555 ? 18 AC3 4 LYS A 94 ? LYS A 87 . ? 1_555 ? 19 AC3 4 HOH F . ? HOH A 1083 . ? 1_555 ? 20 AC4 15 GLN A 16 ? GLN A 9 . ? 1_555 ? 21 AC4 15 HIS A 41 ? HIS A 34 . ? 1_555 ? 22 AC4 15 ASN A 78 ? ASN A 71 . ? 1_555 ? 23 AC4 15 VAL A 79 ? VAL A 72 . ? 1_555 ? 24 AC4 15 LEU A 80 ? LEU A 73 . ? 1_555 ? 25 AC4 15 ARG A 81 ? ARG A 74 . ? 1_555 ? 26 AC4 15 PHE A 87 ? PHE A 80 . ? 1_555 ? 27 AC4 15 HIS A 90 ? HIS A 83 . ? 1_555 ? 28 AC4 15 GLU A 91 ? GLU A 84 . ? 1_555 ? 29 AC4 15 LYS A 94 ? LYS A 87 . ? 1_555 ? 30 AC4 15 HIS A 95 ? HIS A 88 . ? 1_555 ? 31 AC4 15 HOH F . ? HOH A 1039 . ? 1_555 ? 32 AC4 15 HOH F . ? HOH A 1050 . ? 1_555 ? 33 AC4 15 HOH F . ? HOH A 1055 . ? 1_555 ? 34 AC4 15 HOH F . ? HOH A 1077 . ? 1_555 ? # _database_PDB_matrix.entry_id 1V9H _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1V9H _atom_sites.fract_transf_matrix[1][1] 0.018984 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016130 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013090 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 -6 ? ? ? A . n A 1 2 ALA 2 -5 ? ? ? A . n A 1 3 GLU 3 -4 ? ? ? A . n A 1 4 ALA 4 -3 ? ? ? A . n A 1 5 TYR 5 -2 -2 TYR TYR A . n A 1 6 VAL 6 -1 -1 VAL VAL A . n A 1 7 GLU 7 0 0 GLU GLU A . n A 1 8 PHE 8 1 1 PHE PHE A . n A 1 9 ASP 9 2 2 ASP ASP A . n A 1 10 SER 10 3 3 SER SER A . n A 1 11 PHE 11 4 4 PHE PHE A . n A 1 12 TRP 12 5 5 TRP TRP A . n A 1 13 PHE 13 6 6 PHE PHE A . n A 1 14 VAL 14 7 7 VAL VAL A . n A 1 15 GLN 15 8 8 GLN GLN A . n A 1 16 GLN 16 9 9 GLN GLN A . n A 1 17 TRP 17 10 10 TRP TRP A . n A 1 18 PRO 18 11 11 PRO PRO A . n A 1 19 PRO 19 12 12 PRO PRO A . n A 1 20 ALA 20 13 13 ALA ALA A . n A 1 21 VAL 21 14 14 VAL VAL A . n A 1 22 CYS 22 15 15 CYS CYS A . n A 1 23 SER 23 16 16 SER SER A . n A 1 24 PHE 24 17 17 PHE PHE A . n A 1 25 GLN 25 18 18 GLN GLN A . n A 1 26 LYS 26 19 19 LYS LYS A . n A 1 27 SER 27 20 20 SER SER A . n A 1 28 GLY 28 21 21 GLY GLY A . n A 1 29 SER 29 22 22 SER SER A . n A 1 30 CYS 30 23 23 CYS CYS A . n A 1 31 PRO 31 24 24 PRO PRO A . n A 1 32 GLY 32 25 25 GLY GLY A . n A 1 33 SER 33 26 26 SER SER A . n A 1 34 GLY 34 27 27 GLY GLY A . n A 1 35 LEU 35 28 28 LEU LEU A . n A 1 36 ARG 36 29 29 ARG ARG A . n A 1 37 THR 37 30 30 THR THR A . n A 1 38 PHE 38 31 31 PHE PHE A . n A 1 39 THR 39 32 32 THR THR A . n A 1 40 ILE 40 33 33 ILE ILE A . n A 1 41 HIS 41 34 34 HIS HIS A . n A 1 42 GLY 42 35 35 GLY GLY A . n A 1 43 LEU 43 36 36 LEU LEU A . n A 1 44 TRP 44 37 37 TRP TRP A . n A 1 45 PRO 45 38 38 PRO PRO A . n A 1 46 GLN 46 39 39 GLN GLN A . n A 1 47 GLN 47 40 40 GLN GLN A . n A 1 48 SER 48 41 41 SER SER A . n A 1 49 GLY 49 42 42 GLY GLY A . n A 1 50 THR 50 43 43 THR THR A . n A 1 51 SER 51 44 44 SER SER A . n A 1 52 LEU 52 45 45 LEU LEU A . n A 1 53 THR 53 46 46 THR THR A . n A 1 54 ASN 54 47 47 ASN ASN A . n A 1 55 CYS 55 48 48 CYS CYS A . n A 1 56 PRO 56 49 49 PRO PRO A . n A 1 57 GLY 57 50 50 GLY GLY A . n A 1 58 SER 58 51 51 SER SER A . n A 1 59 PRO 59 52 52 PRO PRO A . n A 1 60 PHE 60 53 53 PHE PHE A . n A 1 61 ASP 61 54 54 ASP ASP A . n A 1 62 ILE 62 55 55 ILE ILE A . n A 1 63 THR 63 56 56 THR THR A . n A 1 64 LYS 64 57 57 LYS LYS A . n A 1 65 ILE 65 58 58 ILE ILE A . n A 1 66 SER 66 59 59 SER SER A . n A 1 67 HIS 67 60 60 HIS HIS A . n A 1 68 LEU 68 61 61 LEU LEU A . n A 1 69 GLN 69 62 62 GLN GLN A . n A 1 70 SER 70 63 63 SER SER A . n A 1 71 GLN 71 64 64 GLN GLN A . n A 1 72 LEU 72 65 65 LEU LEU A . n A 1 73 ASN 73 66 66 ASN ASN A . n A 1 74 THR 74 67 67 THR THR A . n A 1 75 LEU 75 68 68 LEU LEU A . n A 1 76 TRP 76 69 69 TRP TRP A . n A 1 77 PRO 77 70 70 PRO PRO A . n A 1 78 ASN 78 71 71 ASN ASN A . n A 1 79 VAL 79 72 72 VAL VAL A . n A 1 80 LEU 80 73 73 LEU LEU A . n A 1 81 ARG 81 74 74 ARG ARG A . n A 1 82 ALA 82 75 75 ALA ALA A . n A 1 83 ASN 83 76 76 ASN ASN A . n A 1 84 ASN 84 77 77 ASN ASN A . n A 1 85 GLN 85 78 78 GLN GLN A . n A 1 86 GLN 86 79 79 GLN GLN A . n A 1 87 PHE 87 80 80 PHE PHE A . n A 1 88 TRP 88 81 81 TRP TRP A . n A 1 89 SER 89 82 82 SER SER A . n A 1 90 HIS 90 83 83 HIS HIS A . n A 1 91 GLU 91 84 84 GLU GLU A . n A 1 92 TRP 92 85 85 TRP TRP A . n A 1 93 THR 93 86 86 THR THR A . n A 1 94 LYS 94 87 87 LYS LYS A . n A 1 95 HIS 95 88 88 HIS HIS A . n A 1 96 GLY 96 89 89 GLY GLY A . n A 1 97 THR 97 90 90 THR THR A . n A 1 98 CYS 98 91 91 CYS CYS A . n A 1 99 SER 99 92 92 SER SER A . n A 1 100 GLU 100 93 93 GLU GLU A . n A 1 101 SER 101 94 94 SER SER A . n A 1 102 THR 102 95 95 THR THR A . n A 1 103 PHE 103 96 96 PHE PHE A . n A 1 104 ASN 104 97 97 ASN ASN A . n A 1 105 GLN 105 98 98 GLN GLN A . n A 1 106 ALA 106 99 99 ALA ALA A . n A 1 107 ALA 107 100 100 ALA ALA A . n A 1 108 ALA 108 101 101 ALA ALA A . n A 1 109 PHE 109 102 102 PHE PHE A . n A 1 110 LYS 110 103 103 LYS LYS A . n A 1 111 LEU 111 104 104 LEU LEU A . n A 1 112 ALA 112 105 105 ALA ALA A . n A 1 113 VAL 113 106 106 VAL VAL A . n A 1 114 ASP 114 107 107 ASP ASP A . n A 1 115 MET 115 108 108 MET MET A . n A 1 116 ARG 116 109 109 ARG ARG A . n A 1 117 ASN 117 110 110 ASN ASN A . n A 1 118 ASN 118 111 111 ASN ASN A . n A 1 119 TYR 119 112 112 TYR TYR A . n A 1 120 ASP 120 113 113 ASP ASP A . n A 1 121 ILE 121 114 114 ILE ILE A . n A 1 122 ILE 122 115 115 ILE ILE A . n A 1 123 GLY 123 116 116 GLY GLY A . n A 1 124 ALA 124 117 117 ALA ALA A . n A 1 125 LEU 125 118 118 LEU LEU A . n A 1 126 ARG 126 119 119 ARG ARG A . n A 1 127 PRO 127 120 120 PRO PRO A . n A 1 128 HIS 128 121 121 HIS HIS A . n A 1 129 ALA 129 122 122 ALA ALA A . n A 1 130 ALA 130 123 123 ALA ALA A . n A 1 131 GLY 131 124 124 GLY GLY A . n A 1 132 PRO 132 125 125 PRO PRO A . n A 1 133 ASN 133 126 126 ASN ASN A . n A 1 134 GLY 134 127 127 GLY GLY A . n A 1 135 ARG 135 128 128 ARG ARG A . n A 1 136 THR 136 129 129 THR THR A . n A 1 137 LYS 137 130 130 LYS LYS A . n A 1 138 SER 138 131 131 SER SER A . n A 1 139 ARG 139 132 132 ARG ARG A . n A 1 140 GLN 140 133 133 GLN GLN A . n A 1 141 ALA 141 134 134 ALA ALA A . n A 1 142 ILE 142 135 135 ILE ILE A . n A 1 143 LYS 143 136 136 LYS LYS A . n A 1 144 GLY 144 137 137 GLY GLY A . n A 1 145 PHE 145 138 138 PHE PHE A . n A 1 146 LEU 146 139 139 LEU LEU A . n A 1 147 LYS 147 140 140 LYS LYS A . n A 1 148 ALA 148 141 141 ALA ALA A . n A 1 149 LYS 149 142 142 LYS LYS A . n A 1 150 PHE 150 143 143 PHE PHE A . n A 1 151 GLY 151 144 144 GLY GLY A . n A 1 152 LYS 152 145 145 LYS LYS A . n A 1 153 PHE 153 146 146 PHE PHE A . n A 1 154 PRO 154 147 147 PRO PRO A . n A 1 155 GLY 155 148 148 GLY GLY A . n A 1 156 LEU 156 149 149 LEU LEU A . n A 1 157 ARG 157 150 150 ARG ARG A . n A 1 158 CYS 158 151 151 CYS CYS A . n A 1 159 ARG 159 152 152 ARG ARG A . n A 1 160 THR 160 153 153 THR THR A . n A 1 161 ASP 161 154 154 ASP ASP A . n A 1 162 PRO 162 155 155 PRO PRO A . n A 1 163 GLN 163 156 156 GLN GLN A . n A 1 164 THR 164 157 157 THR THR A . n A 1 165 LYS 165 158 158 LYS LYS A . n A 1 166 VAL 166 159 159 VAL VAL A . n A 1 167 SER 167 160 160 SER SER A . n A 1 168 TYR 168 161 161 TYR TYR A . n A 1 169 LEU 169 162 162 LEU LEU A . n A 1 170 VAL 170 163 163 VAL VAL A . n A 1 171 GLU 171 164 164 GLU GLU A . n A 1 172 VAL 172 165 165 VAL VAL A . n A 1 173 VAL 173 166 166 VAL VAL A . n A 1 174 ALA 174 167 167 ALA ALA A . n A 1 175 CYS 175 168 168 CYS CYS A . n A 1 176 PHE 176 169 169 PHE PHE A . n A 1 177 ALA 177 170 170 ALA ALA A . n A 1 178 GLN 178 171 171 GLN GLN A . n A 1 179 ASP 179 172 172 ASP ASP A . n A 1 180 GLY 180 173 173 GLY GLY A . n A 1 181 SER 181 174 174 SER SER A . n A 1 182 THR 182 175 175 THR THR A . n A 1 183 LEU 183 176 176 LEU LEU A . n A 1 184 ILE 184 177 177 ILE ILE A . n A 1 185 ASP 185 178 178 ASP ASP A . n A 1 186 CYS 186 179 179 CYS CYS A . n A 1 187 THR 187 180 180 THR THR A . n A 1 188 ARG 188 181 181 ARG ARG A . n A 1 189 ASP 189 182 182 ASP ASP A . n A 1 190 THR 190 183 183 THR THR A . n A 1 191 CYS 191 184 184 CYS CYS A . n A 1 192 GLY 192 185 185 GLY GLY A . n A 1 193 ALA 193 186 186 ALA ALA A . n A 1 194 ASN 194 187 187 ASN ASN A . n A 1 195 PHE 195 188 188 PHE PHE A . n A 1 196 ILE 196 189 189 ILE ILE A . n A 1 197 PHE 197 190 190 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 301 301 SO4 SO4 A . C 2 SO4 1 302 302 SO4 SO4 A . D 2 SO4 1 303 303 SO4 SO4 A . E 3 U5P 1 1001 1 U5P U5P A . F 4 HOH 1 1002 1 HOH TIP A . F 4 HOH 2 1003 2 HOH TIP A . F 4 HOH 3 1004 3 HOH TIP A . F 4 HOH 4 1005 4 HOH TIP A . F 4 HOH 5 1006 5 HOH TIP A . F 4 HOH 6 1007 6 HOH TIP A . F 4 HOH 7 1008 7 HOH TIP A . F 4 HOH 8 1009 8 HOH TIP A . F 4 HOH 9 1010 9 HOH TIP A . F 4 HOH 10 1011 10 HOH TIP A . F 4 HOH 11 1012 11 HOH TIP A . F 4 HOH 12 1013 12 HOH TIP A . F 4 HOH 13 1014 13 HOH TIP A . F 4 HOH 14 1015 14 HOH TIP A . F 4 HOH 15 1016 15 HOH TIP A . F 4 HOH 16 1017 16 HOH TIP A . F 4 HOH 17 1018 17 HOH TIP A . F 4 HOH 18 1019 18 HOH TIP A . F 4 HOH 19 1020 19 HOH TIP A . F 4 HOH 20 1021 20 HOH TIP A . F 4 HOH 21 1022 21 HOH TIP A . F 4 HOH 22 1023 22 HOH TIP A . F 4 HOH 23 1024 23 HOH TIP A . F 4 HOH 24 1025 24 HOH TIP A . F 4 HOH 25 1026 25 HOH TIP A . F 4 HOH 26 1027 26 HOH TIP A . F 4 HOH 27 1028 27 HOH TIP A . F 4 HOH 28 1029 28 HOH TIP A . F 4 HOH 29 1030 29 HOH TIP A . F 4 HOH 30 1031 30 HOH TIP A . F 4 HOH 31 1032 31 HOH TIP A . F 4 HOH 32 1033 32 HOH TIP A . F 4 HOH 33 1034 33 HOH TIP A . F 4 HOH 34 1035 34 HOH TIP A . F 4 HOH 35 1036 35 HOH TIP A . F 4 HOH 36 1037 36 HOH TIP A . F 4 HOH 37 1038 37 HOH TIP A . F 4 HOH 38 1039 38 HOH TIP A . F 4 HOH 39 1040 39 HOH TIP A . F 4 HOH 40 1041 40 HOH TIP A . F 4 HOH 41 1042 41 HOH TIP A . F 4 HOH 42 1043 42 HOH TIP A . F 4 HOH 43 1044 43 HOH TIP A . F 4 HOH 44 1045 44 HOH TIP A . F 4 HOH 45 1046 45 HOH TIP A . F 4 HOH 46 1047 46 HOH TIP A . F 4 HOH 47 1048 47 HOH TIP A . F 4 HOH 48 1049 48 HOH TIP A . F 4 HOH 49 1050 49 HOH TIP A . F 4 HOH 50 1051 50 HOH TIP A . F 4 HOH 51 1052 51 HOH TIP A . F 4 HOH 52 1053 52 HOH TIP A . F 4 HOH 53 1054 53 HOH TIP A . F 4 HOH 54 1055 54 HOH TIP A . F 4 HOH 55 1056 55 HOH TIP A . F 4 HOH 56 1057 56 HOH TIP A . F 4 HOH 57 1058 57 HOH TIP A . F 4 HOH 58 1059 58 HOH TIP A . F 4 HOH 59 1060 59 HOH TIP A . F 4 HOH 60 1061 60 HOH TIP A . F 4 HOH 61 1062 61 HOH TIP A . F 4 HOH 62 1063 62 HOH TIP A . F 4 HOH 63 1064 63 HOH TIP A . F 4 HOH 64 1065 64 HOH TIP A . F 4 HOH 65 1066 65 HOH TIP A . F 4 HOH 66 1067 66 HOH TIP A . F 4 HOH 67 1068 67 HOH TIP A . F 4 HOH 68 1069 68 HOH TIP A . F 4 HOH 69 1070 69 HOH TIP A . F 4 HOH 70 1071 70 HOH TIP A . F 4 HOH 71 1072 71 HOH TIP A . F 4 HOH 72 1073 72 HOH TIP A . F 4 HOH 73 1074 73 HOH TIP A . F 4 HOH 74 1075 74 HOH TIP A . F 4 HOH 75 1076 75 HOH TIP A . F 4 HOH 76 1077 76 HOH TIP A . F 4 HOH 77 1078 77 HOH TIP A . F 4 HOH 78 1079 78 HOH TIP A . F 4 HOH 79 1080 79 HOH TIP A . F 4 HOH 80 1081 80 HOH TIP A . F 4 HOH 81 1082 81 HOH TIP A . F 4 HOH 82 1083 82 HOH TIP A . F 4 HOH 83 1084 83 HOH TIP A . F 4 HOH 84 1085 84 HOH TIP A . F 4 HOH 85 1086 85 HOH TIP A . F 4 HOH 86 1087 86 HOH TIP A . F 4 HOH 87 1088 87 HOH TIP A . F 4 HOH 88 1089 88 HOH TIP A . F 4 HOH 89 1090 89 HOH TIP A . F 4 HOH 90 1091 90 HOH TIP A . F 4 HOH 91 1092 91 HOH TIP A . F 4 HOH 92 1093 92 HOH TIP A . F 4 HOH 93 1094 93 HOH TIP A . F 4 HOH 94 1095 94 HOH TIP A . F 4 HOH 95 1096 95 HOH TIP A . F 4 HOH 96 1097 96 HOH TIP A . F 4 HOH 97 1098 97 HOH TIP A . F 4 HOH 98 1099 98 HOH TIP A . F 4 HOH 99 1100 99 HOH TIP A . F 4 HOH 100 1101 100 HOH TIP A . F 4 HOH 101 1102 101 HOH TIP A . F 4 HOH 102 1103 102 HOH TIP A . F 4 HOH 103 1104 103 HOH TIP A . F 4 HOH 104 1105 104 HOH TIP A . F 4 HOH 105 1106 105 HOH TIP A . F 4 HOH 106 1107 106 HOH TIP A . F 4 HOH 107 1108 107 HOH TIP A . F 4 HOH 108 1109 108 HOH TIP A . F 4 HOH 109 1110 109 HOH TIP A . F 4 HOH 110 1111 110 HOH TIP A . F 4 HOH 111 1112 111 HOH TIP A . F 4 HOH 112 1113 112 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-10-05 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2021-11-10 6 'Structure model' 1 5 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_ref_seq_dif 4 5 'Structure model' struct_site 5 6 'Structure model' chem_comp_atom 6 6 'Structure model' chem_comp_bond 7 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_ref_seq_dif.details' 6 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 MAR345 'data collection' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 18 ? ? -117.01 57.20 2 1 LYS A 19 ? ? -60.44 3.40 3 1 PRO A 49 ? ? -69.77 75.73 4 1 ASN A 126 ? ? -154.00 14.90 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU -6 ? A GLU 1 2 1 Y 1 A ALA -5 ? A ALA 2 3 1 Y 1 A GLU -4 ? A GLU 3 4 1 Y 1 A ALA -3 ? A ALA 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 SO4 S S N N 304 SO4 O1 O N N 305 SO4 O2 O N N 306 SO4 O3 O N N 307 SO4 O4 O N N 308 THR N N N N 309 THR CA C N S 310 THR C C N N 311 THR O O N N 312 THR CB C N R 313 THR OG1 O N N 314 THR CG2 C N N 315 THR OXT O N N 316 THR H H N N 317 THR H2 H N N 318 THR HA H N N 319 THR HB H N N 320 THR HG1 H N N 321 THR HG21 H N N 322 THR HG22 H N N 323 THR HG23 H N N 324 THR HXT H N N 325 TRP N N N N 326 TRP CA C N S 327 TRP C C N N 328 TRP O O N N 329 TRP CB C N N 330 TRP CG C Y N 331 TRP CD1 C Y N 332 TRP CD2 C Y N 333 TRP NE1 N Y N 334 TRP CE2 C Y N 335 TRP CE3 C Y N 336 TRP CZ2 C Y N 337 TRP CZ3 C Y N 338 TRP CH2 C Y N 339 TRP OXT O N N 340 TRP H H N N 341 TRP H2 H N N 342 TRP HA H N N 343 TRP HB2 H N N 344 TRP HB3 H N N 345 TRP HD1 H N N 346 TRP HE1 H N N 347 TRP HE3 H N N 348 TRP HZ2 H N N 349 TRP HZ3 H N N 350 TRP HH2 H N N 351 TRP HXT H N N 352 TYR N N N N 353 TYR CA C N S 354 TYR C C N N 355 TYR O O N N 356 TYR CB C N N 357 TYR CG C Y N 358 TYR CD1 C Y N 359 TYR CD2 C Y N 360 TYR CE1 C Y N 361 TYR CE2 C Y N 362 TYR CZ C Y N 363 TYR OH O N N 364 TYR OXT O N N 365 TYR H H N N 366 TYR H2 H N N 367 TYR HA H N N 368 TYR HB2 H N N 369 TYR HB3 H N N 370 TYR HD1 H N N 371 TYR HD2 H N N 372 TYR HE1 H N N 373 TYR HE2 H N N 374 TYR HH H N N 375 TYR HXT H N N 376 U5P N1 N N N 377 U5P C2 C N N 378 U5P N3 N N N 379 U5P C4 C N N 380 U5P C5 C N N 381 U5P C6 C N N 382 U5P O2 O N N 383 U5P O4 O N N 384 U5P "C1'" C N R 385 U5P "C2'" C N R 386 U5P "O2'" O N N 387 U5P "C3'" C N S 388 U5P "C4'" C N R 389 U5P "O3'" O N N 390 U5P "O4'" O N N 391 U5P "C5'" C N N 392 U5P "O5'" O N N 393 U5P P P N N 394 U5P O1P O N N 395 U5P O2P O N N 396 U5P O3P O N N 397 U5P HN3 H N N 398 U5P H5 H N N 399 U5P H6 H N N 400 U5P "H1'" H N N 401 U5P "H2'" H N N 402 U5P "HO2'" H N N 403 U5P "H3'" H N N 404 U5P "H4'" H N N 405 U5P "HO3'" H N N 406 U5P "H5'1" H N N 407 U5P "H5'2" H N N 408 U5P HOP2 H N N 409 U5P HOP3 H N N 410 VAL N N N N 411 VAL CA C N S 412 VAL C C N N 413 VAL O O N N 414 VAL CB C N N 415 VAL CG1 C N N 416 VAL CG2 C N N 417 VAL OXT O N N 418 VAL H H N N 419 VAL H2 H N N 420 VAL HA H N N 421 VAL HB H N N 422 VAL HG11 H N N 423 VAL HG12 H N N 424 VAL HG13 H N N 425 VAL HG21 H N N 426 VAL HG22 H N N 427 VAL HG23 H N N 428 VAL HXT H N N 429 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 SO4 S O1 doub N N 290 SO4 S O2 doub N N 291 SO4 S O3 sing N N 292 SO4 S O4 sing N N 293 THR N CA sing N N 294 THR N H sing N N 295 THR N H2 sing N N 296 THR CA C sing N N 297 THR CA CB sing N N 298 THR CA HA sing N N 299 THR C O doub N N 300 THR C OXT sing N N 301 THR CB OG1 sing N N 302 THR CB CG2 sing N N 303 THR CB HB sing N N 304 THR OG1 HG1 sing N N 305 THR CG2 HG21 sing N N 306 THR CG2 HG22 sing N N 307 THR CG2 HG23 sing N N 308 THR OXT HXT sing N N 309 TRP N CA sing N N 310 TRP N H sing N N 311 TRP N H2 sing N N 312 TRP CA C sing N N 313 TRP CA CB sing N N 314 TRP CA HA sing N N 315 TRP C O doub N N 316 TRP C OXT sing N N 317 TRP CB CG sing N N 318 TRP CB HB2 sing N N 319 TRP CB HB3 sing N N 320 TRP CG CD1 doub Y N 321 TRP CG CD2 sing Y N 322 TRP CD1 NE1 sing Y N 323 TRP CD1 HD1 sing N N 324 TRP CD2 CE2 doub Y N 325 TRP CD2 CE3 sing Y N 326 TRP NE1 CE2 sing Y N 327 TRP NE1 HE1 sing N N 328 TRP CE2 CZ2 sing Y N 329 TRP CE3 CZ3 doub Y N 330 TRP CE3 HE3 sing N N 331 TRP CZ2 CH2 doub Y N 332 TRP CZ2 HZ2 sing N N 333 TRP CZ3 CH2 sing Y N 334 TRP CZ3 HZ3 sing N N 335 TRP CH2 HH2 sing N N 336 TRP OXT HXT sing N N 337 TYR N CA sing N N 338 TYR N H sing N N 339 TYR N H2 sing N N 340 TYR CA C sing N N 341 TYR CA CB sing N N 342 TYR CA HA sing N N 343 TYR C O doub N N 344 TYR C OXT sing N N 345 TYR CB CG sing N N 346 TYR CB HB2 sing N N 347 TYR CB HB3 sing N N 348 TYR CG CD1 doub Y N 349 TYR CG CD2 sing Y N 350 TYR CD1 CE1 sing Y N 351 TYR CD1 HD1 sing N N 352 TYR CD2 CE2 doub Y N 353 TYR CD2 HD2 sing N N 354 TYR CE1 CZ doub Y N 355 TYR CE1 HE1 sing N N 356 TYR CE2 CZ sing Y N 357 TYR CE2 HE2 sing N N 358 TYR CZ OH sing N N 359 TYR OH HH sing N N 360 TYR OXT HXT sing N N 361 U5P N1 C2 sing N N 362 U5P N1 C6 sing N N 363 U5P N1 "C1'" sing N N 364 U5P C2 N3 sing N N 365 U5P C2 O2 doub N N 366 U5P N3 C4 sing N N 367 U5P N3 HN3 sing N N 368 U5P C4 C5 sing N N 369 U5P C4 O4 doub N N 370 U5P C5 C6 doub N N 371 U5P C5 H5 sing N N 372 U5P C6 H6 sing N N 373 U5P "C1'" "C2'" sing N N 374 U5P "C1'" "O4'" sing N N 375 U5P "C1'" "H1'" sing N N 376 U5P "C2'" "O2'" sing N N 377 U5P "C2'" "C3'" sing N N 378 U5P "C2'" "H2'" sing N N 379 U5P "O2'" "HO2'" sing N N 380 U5P "C3'" "C4'" sing N N 381 U5P "C3'" "O3'" sing N N 382 U5P "C3'" "H3'" sing N N 383 U5P "C4'" "O4'" sing N N 384 U5P "C4'" "C5'" sing N N 385 U5P "C4'" "H4'" sing N N 386 U5P "O3'" "HO3'" sing N N 387 U5P "C5'" "O5'" sing N N 388 U5P "C5'" "H5'1" sing N N 389 U5P "C5'" "H5'2" sing N N 390 U5P "O5'" P sing N N 391 U5P P O1P doub N N 392 U5P P O2P sing N N 393 U5P P O3P sing N N 394 U5P O2P HOP2 sing N N 395 U5P O3P HOP3 sing N N 396 VAL N CA sing N N 397 VAL N H sing N N 398 VAL N H2 sing N N 399 VAL CA C sing N N 400 VAL CA CB sing N N 401 VAL CA HA sing N N 402 VAL C O doub N N 403 VAL C OXT sing N N 404 VAL CB CG1 sing N N 405 VAL CB CG2 sing N N 406 VAL CB HB sing N N 407 VAL CG1 HG11 sing N N 408 VAL CG1 HG12 sing N N 409 VAL CG1 HG13 sing N N 410 VAL CG2 HG21 sing N N 411 VAL CG2 HG22 sing N N 412 VAL CG2 HG23 sing N N 413 VAL OXT HXT sing N N 414 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 "URIDINE-5'-MONOPHOSPHATE" U5P 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1BK7 _pdbx_initial_refinement_model.details 'PDB entry 1BK7' #