HEADER OXIDOREDUCTASE 26-JAN-04 1V9N TITLE STRUCTURE OF MALATE DEHYDROGENASE FROM PYROCOCCUS HORIKOSHII OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.37; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS DEHYDROGENASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 2 STRUCTURAL GENOMICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.K.LOKANATH,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1V9N 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1V9N 1 VERSN REVDAT 2 24-FEB-09 1V9N 1 VERSN REVDAT 1 29-MAR-05 1V9N 0 JRNL AUTH N.K.LOKANATH,N.KUNISHIMA JRNL TITL STRUCTURE OF MALATE DEHYDROGENASE FROM PYROCOCCUS HORIKOSHII JRNL TITL 2 OT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2172078.070 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1168 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3797 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 184 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2617 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.68000 REMARK 3 B22 (A**2) : 3.68000 REMARK 3 B33 (A**2) : -7.36000 REMARK 3 B12 (A**2) : 2.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.760 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 63.09 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NDP.PARAM REMARK 3 PARAMETER FILE 3 : LIG.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NDP.TOP REMARK 3 TOPOLOGY FILE 3 : LIG.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V9N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000006380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.985, 0.97914, 0.97944 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24293 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, HEPES, LICL2, PH 5.1, MICROBATCH, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.42667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.85333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.85333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.42667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY OF THIS STRUCTURE IS A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 128.50085 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 212.13333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 197 REMARK 465 TYR A 198 REMARK 465 ARG A 199 REMARK 465 ARG A 200 REMARK 465 LYS A 201 REMARK 465 GLY A 202 REMARK 465 LYS A 203 REMARK 465 ASP A 204 REMARK 465 ILE A 205 REMARK 465 PRO A 206 REMARK 465 GLU A 207 REMARK 465 GLY A 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 196 CB CG CD OE1 OE2 REMARK 470 TRP A 209 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 470 TRP A 209 CZ2 CZ3 CH2 REMARK 470 ALA A 210 CB REMARK 470 ILE A 211 CB CG1 CG2 CD1 REMARK 470 ASN A 212 CB CG OD1 ND2 REMARK 470 ARG A 213 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU A 214 CB CG CD OE1 OE2 REMARK 470 ASN A 216 CB CG OD1 ND2 REMARK 470 ILE A 217 CB CG1 CG2 CD1 REMARK 470 THR A 218 CB OG1 CG2 REMARK 470 THR A 219 CB OG1 CG2 REMARK 470 LYS A 220 CB CG CD CE NZ REMARK 470 VAL A 221 CB CG1 CG2 REMARK 470 GLU A 222 CB CG CD OE1 OE2 REMARK 470 GLU A 223 CB CG CD OE1 OE2 REMARK 470 VAL A 224 CB CG1 CG2 REMARK 470 PHE A 225 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 226 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 330 CG - SE - CE ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 8 -142.86 -128.35 REMARK 500 ASN A 10 12.97 -68.94 REMARK 500 VAL A 52 70.40 -104.64 REMARK 500 SER A 125 -163.12 -116.60 REMARK 500 SER A 151 -168.98 -160.36 REMARK 500 LEU A 154 -14.24 -143.42 REMARK 500 ASN A 168 90.95 4.89 REMARK 500 ASP A 178 -122.92 -119.37 REMARK 500 LEU A 195 95.72 -42.26 REMARK 500 ALA A 210 -20.17 150.16 REMARK 500 ILE A 211 79.55 -66.91 REMARK 500 GLU A 214 -118.52 -95.44 REMARK 500 ILE A 217 89.37 126.49 REMARK 500 THR A 218 -74.08 -149.08 REMARK 500 THR A 219 -113.24 166.38 REMARK 500 LYS A 220 -118.70 93.77 REMARK 500 VAL A 221 -35.67 -176.25 REMARK 500 SER A 256 -69.35 -94.81 REMARK 500 TYR A 341 160.19 -49.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001001277.1 RELATED DB: TARGETDB DBREF 1V9N A 1 360 UNP O59028 MDH_PYRHO 1 360 SEQADV 1V9N MSE A 1 UNP O59028 MET 1 MODIFIED RESIDUE SEQADV 1V9N MSE A 46 UNP O59028 MET 46 MODIFIED RESIDUE SEQADV 1V9N MSE A 105 UNP O59028 MET 105 MODIFIED RESIDUE SEQADV 1V9N MSE A 137 UNP O59028 MET 137 MODIFIED RESIDUE SEQADV 1V9N MSE A 143 UNP O59028 MET 143 MODIFIED RESIDUE SEQADV 1V9N MSE A 148 UNP O59028 MET 148 MODIFIED RESIDUE SEQADV 1V9N MSE A 185 UNP O59028 MET 185 MODIFIED RESIDUE SEQADV 1V9N MSE A 251 UNP O59028 MET 251 MODIFIED RESIDUE SEQADV 1V9N MSE A 283 UNP O59028 MET 283 MODIFIED RESIDUE SEQADV 1V9N MSE A 303 UNP O59028 MET 303 MODIFIED RESIDUE SEQADV 1V9N MSE A 330 UNP O59028 MET 330 MODIFIED RESIDUE SEQRES 1 A 360 MSE PHE GLU LYS GLY TYR VAL ASP GLU ASN TYR ILE ARG SEQRES 2 A 360 VAL PRO LYS ASP ARG LEU PHE SER PHE ILE VAL ARG VAL SEQRES 3 A 360 LEU THR LYS LEU GLY VAL PRO GLU GLU ASP ALA LYS ILE SEQRES 4 A 360 VAL ALA ASP ASN LEU VAL MSE ALA ASP LEU ARG GLY VAL SEQRES 5 A 360 GLU SER HIS GLY VAL GLN ARG LEU LYS ARG TYR VAL ASP SEQRES 6 A 360 GLY ILE ILE SER GLY GLY VAL ASN LEU HIS PRO LYS ILE SEQRES 7 A 360 ARG VAL ILE ARG GLU GLY PRO SER TYR ALA LEU ILE ASP SEQRES 8 A 360 GLY ASP GLU GLY LEU GLY GLN VAL VAL GLY TYR ARG SER SEQRES 9 A 360 MSE LYS LEU ALA ILE LYS LYS ALA LYS ASP THR GLY ILE SEQRES 10 A 360 GLY ILE VAL ILE ALA ARG ASN SER ASN HIS TYR GLY ILE SEQRES 11 A 360 ALA GLY TYR TYR ALA LEU MSE ALA ALA GLU GLU GLY MSE SEQRES 12 A 360 ILE GLY ILE SER MSE THR ASN SER ARG PRO LEU VAL ALA SEQRES 13 A 360 PRO THR GLY GLY ILE GLU ARG ILE LEU GLY THR ASN PRO SEQRES 14 A 360 ILE ALA LEU ALA ALA PRO THR LYS ASP LYS PRO PHE LEU SEQRES 15 A 360 LEU ASP MSE ALA THR SER VAL VAL PRO ILE GLY LYS LEU SEQRES 16 A 360 GLU VAL TYR ARG ARG LYS GLY LYS ASP ILE PRO GLU GLY SEQRES 17 A 360 TRP ALA ILE ASN ARG GLU GLY ASN ILE THR THR LYS VAL SEQRES 18 A 360 GLU GLU VAL PHE ASN GLY GLY ALA LEU LEU PRO LEU GLY SEQRES 19 A 360 GLY PHE GLY GLU LEU LEU GLY GLY HIS LYS GLY TYR GLY SEQRES 20 A 360 LEU SER LEU MSE VAL ASP ILE LEU SER GLY ILE LEU SER SEQRES 21 A 360 GLY GLY THR TRP SER LYS TYR VAL LYS ASN THR SER GLU SEQRES 22 A 360 LYS GLY SER ASN VAL CYS HIS PHE PHE MSE VAL ILE ASP SEQRES 23 A 360 ILE GLU HIS PHE ILE PRO LEU GLU GLU PHE LYS GLU LYS SEQRES 24 A 360 ILE SER GLN MSE ILE GLU GLU ILE LYS SER SER ARG LYS SEQRES 25 A 360 HIS PRO GLU PHE GLU ARG ILE TRP ILE HIS GLY GLU LYS SEQRES 26 A 360 GLY PHE LEU THR MSE GLU THR ARG LEU LYS LEU GLY ILE SEQRES 27 A 360 PRO ILE TYR ARG LYS VAL LEU GLU GLU LEU ASN GLU ILE SEQRES 28 A 360 ALA LYS ARG VAL GLY VAL GLU GLY LEU MODRES 1V9N MSE A 1 MET SELENOMETHIONINE MODRES 1V9N MSE A 46 MET SELENOMETHIONINE MODRES 1V9N MSE A 105 MET SELENOMETHIONINE MODRES 1V9N MSE A 137 MET SELENOMETHIONINE MODRES 1V9N MSE A 143 MET SELENOMETHIONINE MODRES 1V9N MSE A 148 MET SELENOMETHIONINE MODRES 1V9N MSE A 185 MET SELENOMETHIONINE MODRES 1V9N MSE A 251 MET SELENOMETHIONINE MODRES 1V9N MSE A 283 MET SELENOMETHIONINE MODRES 1V9N MSE A 303 MET SELENOMETHIONINE MODRES 1V9N MSE A 330 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 46 8 HET MSE A 105 8 HET MSE A 137 8 HET MSE A 143 8 HET MSE A 148 8 HET MSE A 185 8 HET MSE A 251 8 HET MSE A 283 8 HET MSE A 303 8 HET MSE A 330 8 HET NDP A 401 48 HET GOL A 403 6 HETNAM MSE SELENOMETHIONINE HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 NDP C21 H30 N7 O17 P3 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *192(H2 O) HELIX 1 1 PRO A 15 LEU A 30 1 16 HELIX 2 2 PRO A 33 ARG A 50 1 18 HELIX 3 3 VAL A 52 GLN A 58 5 7 HELIX 4 4 ARG A 59 SER A 69 1 11 HELIX 5 5 LEU A 96 GLY A 116 1 21 HELIX 6 6 ALA A 131 GLU A 140 1 10 HELIX 7 7 GLY A 241 GLY A 257 1 17 HELIX 8 8 TRP A 264 VAL A 268 5 5 HELIX 9 9 ILE A 287 PHE A 290 5 4 HELIX 10 10 PRO A 292 SER A 309 1 18 HELIX 11 11 GLY A 323 GLY A 337 1 15 HELIX 12 12 ARG A 342 GLY A 356 1 15 SHEET 1 A 2 TYR A 11 VAL A 14 0 SHEET 2 A 2 ILE A 338 TYR A 341 -1 O ILE A 338 N VAL A 14 SHEET 1 B 7 ARG A 79 GLY A 84 0 SHEET 2 B 7 TYR A 87 ASP A 91 -1 O LEU A 89 N ILE A 81 SHEET 3 B 7 ILE A 117 SER A 125 1 O ILE A 121 N ILE A 90 SHEET 4 B 7 VAL A 278 ILE A 285 -1 O VAL A 284 N GLY A 118 SHEET 5 B 7 ILE A 144 THR A 149 -1 N ILE A 146 O MSE A 283 SHEET 6 B 7 ILE A 170 ALA A 174 -1 O ALA A 173 N GLY A 145 SHEET 7 B 7 PHE A 181 MSE A 185 -1 O PHE A 181 N ALA A 174 LINK C MSE A 1 N PHE A 2 1555 1555 1.33 LINK C VAL A 45 N MSE A 46 1555 1555 1.33 LINK C MSE A 46 N ALA A 47 1555 1555 1.33 LINK C SER A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N LYS A 106 1555 1555 1.33 LINK C LEU A 136 N MSE A 137 1555 1555 1.33 LINK C MSE A 137 N ALA A 138 1555 1555 1.33 LINK C GLY A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N ILE A 144 1555 1555 1.33 LINK C SER A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N THR A 149 1555 1555 1.33 LINK C ASP A 184 N MSE A 185 1555 1555 1.33 LINK C MSE A 185 N ALA A 186 1555 1555 1.33 LINK C LEU A 250 N MSE A 251 1555 1555 1.33 LINK C MSE A 251 N VAL A 252 1555 1555 1.33 LINK C PHE A 282 N MSE A 283 1555 1555 1.33 LINK C MSE A 283 N VAL A 284 1555 1555 1.33 LINK C GLN A 302 N MSE A 303 1555 1555 1.33 LINK C MSE A 303 N ILE A 304 1555 1555 1.33 LINK C THR A 329 N MSE A 330 1555 1555 1.33 LINK C MSE A 330 N GLU A 331 1555 1555 1.33 SITE 1 AC1 36 LYS A 4 ARG A 50 VAL A 52 HIS A 55 SITE 2 AC1 36 HIS A 127 GLY A 129 ILE A 130 ALA A 131 SITE 3 AC1 36 SER A 151 THR A 167 PRO A 169 LEU A 182 SITE 4 AC1 36 LEU A 183 ASP A 184 MSE A 185 ALA A 186 SITE 5 AC1 36 PRO A 191 GLU A 238 HIS A 243 LYS A 244 SITE 6 AC1 36 TYR A 246 TRP A 320 HIS A 322 GLY A 323 SITE 7 AC1 36 GLU A 324 LYS A 325 GLY A 326 HOH A 410 SITE 8 AC1 36 HOH A 412 HOH A 413 HOH A 433 HOH A 447 SITE 9 AC1 36 HOH A 458 HOH A 511 HOH A 512 HOH A 513 SITE 1 AC2 11 ALA A 156 PRO A 157 THR A 158 GLY A 159 SITE 2 AC2 11 GLY A 160 LEU A 231 PRO A 232 PHE A 236 SITE 3 AC2 11 HIS A 313 PHE A 316 HOH A 480 CRYST1 74.190 74.190 127.280 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013479 0.007782 0.000000 0.00000 SCALE2 0.000000 0.015564 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007857 0.00000 HETATM 1 N MSE A 1 23.247 81.554 80.161 1.00 60.97 N HETATM 2 CA MSE A 1 22.676 81.892 81.497 1.00 60.45 C HETATM 3 C MSE A 1 23.097 80.835 82.510 1.00 57.36 C HETATM 4 O MSE A 1 24.056 80.096 82.281 1.00 57.59 O HETATM 5 CB MSE A 1 21.146 81.949 81.425 1.00 65.31 C HETATM 6 CG MSE A 1 20.588 82.879 80.357 1.00 70.75 C HETATM 7 SE MSE A 1 20.790 82.191 78.562 1.00 81.13 SE HETATM 8 CE MSE A 1 19.069 81.351 78.350 1.00 77.87 C