HEADER PLANT PROTEIN 28-FEB-04 1VBO TITLE CRYSTAL STRUCTURE OF ARTOCARPIN-MANNOTRIOSE COMPLEX CAVEAT 1VBO AYA A 1 HAS WRONG CHIRALITY AT ATOM CA LEU A 139 HAS WRONG CAVEAT 2 1VBO CHIRALITY AT ATOM CA THR B 91 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 1VBO CA AYA C 1 HAS WRONG CHIRALITY AT ATOM CA AYA D 1 HAS WRONG CAVEAT 4 1VBO CHIRALITY AT ATOM CA THR D 91 HAS WRONG CHIRALITY AT ATOM CAVEAT 5 1VBO CA PRO D 92 HAS WRONG CHIRALITY AT ATOM CA AYA E 1 HAS CAVEAT 6 1VBO WRONG CHIRALITY AT ATOM CA AYA F 1 HAS WRONG CHIRALITY AT CAVEAT 7 1VBO ATOM CA AYA G 1 HAS WRONG CHIRALITY AT ATOM CA AYA H 1 HAS CAVEAT 8 1VBO WRONG CHIRALITY AT ATOM CA MAN I 1 HAS WRONG CHIRALITY AT CAVEAT 9 1VBO ATOM C1 MAN J 1 HAS WRONG CHIRALITY AT ATOM C1 MAN K 1 HAS CAVEAT 10 1VBO WRONG CHIRALITY AT ATOM C1 MAN F 2405 HAS WRONG CHIRALITY CAVEAT 11 1VBO AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARTOCARPIN; COMPND 3 CHAIN: A, B, C, D, E, F, G, H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 3 ORGANISM_TAXID: 3490; SOURCE 4 TISSUE: SEEDS KEYWDS BETA-PRISM, MANNOSE-SPECIFIC, LECTIN, JACALIN-LIKE, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.A.JEYAPRAKASH,A.SRIVASTAV,A.SUROLIA,M.VIJAYAN REVDAT 6 25-OCT-23 1VBO 1 HETSYN REVDAT 5 29-JUL-20 1VBO 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 24-JUN-20 1VBO 1 CAVEAT REMARK LINK REVDAT 3 04-OCT-17 1VBO 1 REMARK REVDAT 2 24-FEB-09 1VBO 1 VERSN REVDAT 1 15-JUN-04 1VBO 0 JRNL AUTH A.A.JEYAPRAKASH,A.SRIVASTAV,A.SUROLIA,M.VIJAYAN JRNL TITL STRUCTURAL BASIS FOR THE CARBOHYDRATE SPECIFICITIES OF JRNL TITL 2 ARTOCARPIN: VARIATION IN THE LENGTH OF A LOOP AS A STRATEGY JRNL TITL 3 FOR GENERATING LIGAND SPECIFICITY JRNL REF J.MOL.BIOL. V. 338 757 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15099743 JRNL DOI 10.1016/J.JMB.2004.03.040 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.V.PRATAP,A.A.JEYAPRAKASH,P.G.RANI,K.SEKAR,A.SUROLIA, REMARK 1 AUTH 2 M.VIJAYAN REMARK 1 TITL CRYSTAL STRUCTURES OF ARTOCARPIN, A MORACEAE LECTIN WITH REMARK 1 TITL 2 MANNOSE SPECIFICITY, AND ITS COMPLEX WITH REMARK 1 TITL 3 METHYL-ALPHA-D-MANNOSE: IMPLICATIONS TO THE GENERATION OF REMARK 1 TITL 4 CARBOHYDRATE SPECIFICITY REMARK 1 REF J.MOL.BIOL. V. 317 237 2002 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 11902840 REMARK 1 DOI 10.1006/JMBI.2001.5432 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.SANKARANARAYANAN,K.SEKAR,R.BANERJEE,V.SHARMA,A.SUROLIA, REMARK 1 AUTH 2 M.VIJAYAN REMARK 1 TITL A NOVEL MODE OF CARBOHYDRATE RECOGNITION IN JACALIN, A REMARK 1 TITL 2 MORACEAE PLANT LECTIN WITH A BETA-PRISM FOLD REMARK 1 REF NAT.STRUCT.BIOL. V. 3 596 1996 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 8673603 REMARK 1 DOI 10.1038/NSB0796-596 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.A.JEYAPRAKASH,S.KATIYAR,C.P.SWAMINATHAN,K.SEKAR,A.SUROLIA, REMARK 1 AUTH 2 M.VIJAYAN REMARK 1 TITL STRUCTURAL BASIS OF THE CARBOHYDRATE SPECIFICITIES OF REMARK 1 TITL 2 JACALIN: AN X-RAY AND MODELING STUDY REMARK 1 REF J.MOL.BIOL. V. 332 217 2003 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 12946359 REMARK 1 DOI 10.1016/S0022-2836(03)00901-X REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1485698.720 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 48504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2417 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7623 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 409 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9128 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 228 REMARK 3 SOLVENT ATOMS : 490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.26000 REMARK 3 B22 (A**2) : 3.15000 REMARK 3 B33 (A**2) : 3.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.54000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.40 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 3.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.240 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.060 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.910 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.860 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 32.31 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : CIS4.PARAM REMARK 3 PARAMETER FILE 5 : AYA_XPLOR_PARAM.TXT REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000006437. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 278 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48504 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1J4U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, PEG1450, PHOSPHATE BUFFER, PH REMARK 280 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.14800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, I, J, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H, L, M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA PRO D 92 N THR D 93 1.56 REMARK 500 O GLY G 8 N PRO G 9 1.65 REMARK 500 C GLY C 110 CD PRO C 111 1.69 REMARK 500 C GLY B 110 CD PRO B 111 1.69 REMARK 500 C GLY E 110 CD PRO E 111 1.70 REMARK 500 C GLY F 110 CD PRO F 111 1.70 REMARK 500 C GLY H 110 CD PRO H 111 1.78 REMARK 500 C GLY G 110 CD PRO G 111 1.78 REMARK 500 C GLY D 110 CD PRO D 111 1.78 REMARK 500 C GLY A 110 CD PRO A 111 1.80 REMARK 500 O6 MAN J 1 O5 MAN J 3 1.96 REMARK 500 O6 MAN K 1 O5 MAN K 3 1.96 REMARK 500 O6 MAN I 1 O5 MAN I 3 2.02 REMARK 500 O6 MAN M 1 O5 MAN M 3 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 AYA A 1 C SER A 2 N 0.223 REMARK 500 GLY A 8 C PRO A 9 N 0.265 REMARK 500 AYA B 1 C SER B 2 N 0.245 REMARK 500 GLY B 8 C PRO B 9 N 0.310 REMARK 500 ALA B 90 CA ALA B 90 C 0.272 REMARK 500 THR B 91 N THR B 91 CA -0.433 REMARK 500 THR B 91 CA THR B 91 CB 0.275 REMARK 500 THR B 91 CA THR B 91 C -0.237 REMARK 500 AYA C 1 C SER C 2 N 0.239 REMARK 500 GLY C 8 C PRO C 9 N 0.228 REMARK 500 PRO C 9 N PRO C 9 CA -0.125 REMARK 500 PRO C 9 CD PRO C 9 N 0.085 REMARK 500 AYA D 1 C SER D 2 N 0.272 REMARK 500 GLY D 8 C PRO D 9 N 0.266 REMARK 500 ALA D 90 N ALA D 90 CA 0.252 REMARK 500 THR D 91 N THR D 91 CA -0.408 REMARK 500 THR D 91 CA THR D 91 CB -0.202 REMARK 500 PRO D 92 CA PRO D 92 C -0.318 REMARK 500 AYA E 1 C SER E 2 N 0.224 REMARK 500 GLY E 8 C PRO E 9 N 0.210 REMARK 500 PRO E 9 CA PRO E 9 C -0.248 REMARK 500 THR E 91 C PRO E 92 N 0.284 REMARK 500 ASP F 138 CA ASP F 138 CB -0.294 REMARK 500 ASP F 138 C ASP F 138 O 0.160 REMARK 500 ASP F 138 C LEU F 139 N -0.335 REMARK 500 AYA G 1 C SER G 2 N 0.289 REMARK 500 GLY G 8 C PRO G 9 N 0.256 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 AYA A 1 CA - C - N ANGL. DEV. = 14.4 DEGREES REMARK 500 AYA A 1 O - C - N ANGL. DEV. = -14.6 DEGREES REMARK 500 GLY A 8 O - C - N ANGL. DEV. = -20.3 DEGREES REMARK 500 SER A 41 CB - CA - C ANGL. DEV. = -14.4 DEGREES REMARK 500 VAL A 79 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 PRO A 111 C - N - CA ANGL. DEV. = 35.5 DEGREES REMARK 500 PRO A 111 C - N - CD ANGL. DEV. = -41.2 DEGREES REMARK 500 LEU A 139 CB - CA - C ANGL. DEV. = 34.1 DEGREES REMARK 500 GLY B 8 O - C - N ANGL. DEV. = -12.1 DEGREES REMARK 500 PRO B 9 C - N - CA ANGL. DEV. = 16.3 DEGREES REMARK 500 PRO B 9 C - N - CD ANGL. DEV. = -17.1 DEGREES REMARK 500 PHE B 86 CA - C - N ANGL. DEV. = 18.5 DEGREES REMARK 500 PHE B 86 O - C - N ANGL. DEV. = -12.8 DEGREES REMARK 500 SER B 87 C - N - CA ANGL. DEV. = 40.1 DEGREES REMARK 500 SER B 87 N - CA - CB ANGL. DEV. = 10.5 DEGREES REMARK 500 SER B 87 N - CA - C ANGL. DEV. = -29.4 DEGREES REMARK 500 ALA B 90 CA - C - O ANGL. DEV. = -17.1 DEGREES REMARK 500 THR B 91 N - CA - CB ANGL. DEV. = -32.1 DEGREES REMARK 500 THR B 91 CA - CB - CG2 ANGL. DEV. = -13.3 DEGREES REMARK 500 THR B 91 N - CA - C ANGL. DEV. = 23.3 DEGREES REMARK 500 THR B 91 CA - C - O ANGL. DEV. = -21.7 DEGREES REMARK 500 THR B 91 CA - C - N ANGL. DEV. = 32.7 DEGREES REMARK 500 PRO B 111 C - N - CA ANGL. DEV. = 60.3 DEGREES REMARK 500 PRO B 111 C - N - CD ANGL. DEV. = -54.4 DEGREES REMARK 500 LEU B 122 CA - CB - CG ANGL. DEV. = 19.2 DEGREES REMARK 500 LEU B 139 CB - CA - C ANGL. DEV. = 14.7 DEGREES REMARK 500 LEU B 139 CA - CB - CG ANGL. DEV. = 31.2 DEGREES REMARK 500 AYA C 1 CA - C - N ANGL. DEV. = 17.4 DEGREES REMARK 500 AYA C 1 O - C - N ANGL. DEV. = -24.9 DEGREES REMARK 500 GLY C 8 N - CA - C ANGL. DEV. = 15.7 DEGREES REMARK 500 GLY C 8 O - C - N ANGL. DEV. = -16.8 DEGREES REMARK 500 PRO C 9 CB - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 PRO C 9 N - CA - C ANGL. DEV. = 25.7 DEGREES REMARK 500 ILE C 37 CB - CG1 - CD1 ANGL. DEV. = 32.5 DEGREES REMARK 500 LYS C 70 CG - CD - CE ANGL. DEV. = 26.7 DEGREES REMARK 500 LYS C 70 CD - CE - NZ ANGL. DEV. = 23.2 DEGREES REMARK 500 ASP C 73 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 THR C 91 CB - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 THR C 103 N - CA - CB ANGL. DEV. = 15.3 DEGREES REMARK 500 PRO C 111 C - N - CA ANGL. DEV. = 59.9 DEGREES REMARK 500 PRO C 111 C - N - CD ANGL. DEV. = -54.7 DEGREES REMARK 500 GLU C 115 CA - CB - CG ANGL. DEV. = -16.3 DEGREES REMARK 500 LEU C 139 CB - CA - C ANGL. DEV. = 25.6 DEGREES REMARK 500 AYA D 1 O - C - N ANGL. DEV. = -10.0 DEGREES REMARK 500 GLY D 8 CA - C - N ANGL. DEV. = 19.7 DEGREES REMARK 500 GLY D 8 O - C - N ANGL. DEV. = -22.2 DEGREES REMARK 500 ILE D 37 CB - CG1 - CD1 ANGL. DEV. = 24.7 DEGREES REMARK 500 LYS D 70 CB - CG - CD ANGL. DEV. = -21.1 DEGREES REMARK 500 LYS D 70 CD - CE - NZ ANGL. DEV. = 51.4 DEGREES REMARK 500 ASP D 73 CB - CA - C ANGL. DEV. = 25.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 125 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 34 -96.56 -162.26 REMARK 500 ALA A 88 -8.81 -58.87 REMARK 500 PRO A 111 110.87 -16.42 REMARK 500 TYR B 23 -158.60 -136.66 REMARK 500 LYS B 34 -96.84 -160.92 REMARK 500 SER B 87 -69.10 150.69 REMARK 500 PRO B 111 108.45 174.35 REMARK 500 PRO C 9 142.97 -39.50 REMARK 500 TYR C 23 -158.56 -136.10 REMARK 500 LYS C 34 -96.09 -160.42 REMARK 500 PRO C 111 107.37 169.20 REMARK 500 TYR D 23 -157.23 -136.54 REMARK 500 LYS D 34 -97.72 -160.58 REMARK 500 ALA D 90 35.34 11.83 REMARK 500 THR D 91 144.24 -35.72 REMARK 500 PRO D 92 -99.02 -1.78 REMARK 500 PRO D 111 111.60 -14.05 REMARK 500 TYR E 23 -157.17 -137.06 REMARK 500 LYS E 34 -97.16 -161.58 REMARK 500 HIS E 56 68.36 -118.91 REMARK 500 PRO E 94 138.67 11.62 REMARK 500 PRO E 111 107.33 178.14 REMARK 500 TYR F 23 -158.15 -136.56 REMARK 500 LYS F 34 -95.91 -161.05 REMARK 500 PRO F 111 107.68 -9.44 REMARK 500 TYR G 23 -159.84 -137.96 REMARK 500 LYS G 34 -96.14 -160.26 REMARK 500 PRO G 111 110.90 -21.75 REMARK 500 TYR H 23 -159.42 -137.44 REMARK 500 LYS H 34 -97.07 -159.79 REMARK 500 PRO H 111 113.43 -17.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 90 THR B 91 106.87 REMARK 500 GLY C 8 PRO C 9 -57.25 REMARK 500 ALA D 90 THR D 91 119.00 REMARK 500 THR D 91 PRO D 92 104.60 REMARK 500 GLY E 8 PRO E 9 55.34 REMARK 500 PRO E 92 THR E 93 -118.58 REMARK 500 THR E 93 PRO E 94 -81.68 REMARK 500 GLY G 8 PRO G 9 60.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 27 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA B 90 26.98 REMARK 500 THR B 91 15.35 REMARK 500 AYA C 1 21.80 REMARK 500 GLY C 8 -13.05 REMARK 500 ALA D 90 -15.42 REMARK 500 THR D 91 -33.46 REMARK 500 GLY E 8 19.52 REMARK 500 THR E 93 -19.00 REMARK 500 GLY G 8 32.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 429 DISTANCE = 7.55 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J4S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARTOCARPIN FORM I REMARK 900 RELATED ID: 1J4T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARTOCARPIN FORM II REMARK 900 RELATED ID: 1J4U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARTOCARPIN-METHYL-ALPHA-MANNOSE COMPLEX REMARK 900 RELATED ID: 1VBP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARTOCARPIN-MANNOPENTOSE COMPLEX DBREF 1VBO A 1 147 UNP Q7M1T4 Q7M1T4_ARTIN 1 147 DBREF 1VBO B 1 147 UNP Q7M1T4 Q7M1T4_ARTIN 1 147 DBREF 1VBO C 1 147 UNP Q7M1T4 Q7M1T4_ARTIN 1 147 DBREF 1VBO D 1 147 UNP Q7M1T4 Q7M1T4_ARTIN 1 147 DBREF 1VBO E 1 147 UNP Q7M1T4 Q7M1T4_ARTIN 1 147 DBREF 1VBO F 1 147 UNP Q7M1T4 Q7M1T4_ARTIN 1 147 DBREF 1VBO G 1 147 UNP Q7M1T4 Q7M1T4_ARTIN 1 147 DBREF 1VBO H 1 147 UNP Q7M1T4 Q7M1T4_ARTIN 1 147 SEQRES 1 A 149 AYA SER GLN THR ILE THR VAL GLY PRO TRP GLY GLY PRO SEQRES 2 A 149 GLY GLY ASN GLY TRP ASP ASP GLY SER TYR THR GLY ILE SEQRES 3 A 149 ARG GLN ILE GLU LEU SER TYR LYS GLU ALA ILE GLY SER SEQRES 4 A 149 PHE SER VAL ILE TYR ASP LEU ASN GLY ASP PRO PHE SER SEQRES 5 A 149 GLY PRO LYS HIS THR SER LYS LEU PRO TYR LYS ASN VAL SEQRES 6 A 149 LYS ILE GLU LEU LYS PHE PRO ASP GLU PHE LEU GLU SER SEQRES 7 A 149 VAL SER GLY TYR THR GLY PRO PHE SER ALA LEU ALA THR SEQRES 8 A 149 PRO THR PRO VAL VAL ARG SER LEU THR PHE LYS THR ASN SEQRES 9 A 149 LYS GLY ARG THR PHE GLY PRO TYR GLY ASP GLU GLU GLY SEQRES 10 A 149 THR TYR PHE ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL SEQRES 11 A 149 GLY PHE LYS GLY ARG THR GLY ASP LEU LEU ASP ALA ILE SEQRES 12 A 149 GLY ILE HIS MET SER LEU SEQRES 1 B 149 AYA SER GLN THR ILE THR VAL GLY PRO TRP GLY GLY PRO SEQRES 2 B 149 GLY GLY ASN GLY TRP ASP ASP GLY SER TYR THR GLY ILE SEQRES 3 B 149 ARG GLN ILE GLU LEU SER TYR LYS GLU ALA ILE GLY SER SEQRES 4 B 149 PHE SER VAL ILE TYR ASP LEU ASN GLY ASP PRO PHE SER SEQRES 5 B 149 GLY PRO LYS HIS THR SER LYS LEU PRO TYR LYS ASN VAL SEQRES 6 B 149 LYS ILE GLU LEU LYS PHE PRO ASP GLU PHE LEU GLU SER SEQRES 7 B 149 VAL SER GLY TYR THR GLY PRO PHE SER ALA LEU ALA THR SEQRES 8 B 149 PRO THR PRO VAL VAL ARG SER LEU THR PHE LYS THR ASN SEQRES 9 B 149 LYS GLY ARG THR PHE GLY PRO TYR GLY ASP GLU GLU GLY SEQRES 10 B 149 THR TYR PHE ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL SEQRES 11 B 149 GLY PHE LYS GLY ARG THR GLY ASP LEU LEU ASP ALA ILE SEQRES 12 B 149 GLY ILE HIS MET SER LEU SEQRES 1 C 149 AYA SER GLN THR ILE THR VAL GLY PRO TRP GLY GLY PRO SEQRES 2 C 149 GLY GLY ASN GLY TRP ASP ASP GLY SER TYR THR GLY ILE SEQRES 3 C 149 ARG GLN ILE GLU LEU SER TYR LYS GLU ALA ILE GLY SER SEQRES 4 C 149 PHE SER VAL ILE TYR ASP LEU ASN GLY ASP PRO PHE SER SEQRES 5 C 149 GLY PRO LYS HIS THR SER LYS LEU PRO TYR LYS ASN VAL SEQRES 6 C 149 LYS ILE GLU LEU LYS PHE PRO ASP GLU PHE LEU GLU SER SEQRES 7 C 149 VAL SER GLY TYR THR GLY PRO PHE SER ALA LEU ALA THR SEQRES 8 C 149 PRO THR PRO VAL VAL ARG SER LEU THR PHE LYS THR ASN SEQRES 9 C 149 LYS GLY ARG THR PHE GLY PRO TYR GLY ASP GLU GLU GLY SEQRES 10 C 149 THR TYR PHE ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL SEQRES 11 C 149 GLY PHE LYS GLY ARG THR GLY ASP LEU LEU ASP ALA ILE SEQRES 12 C 149 GLY ILE HIS MET SER LEU SEQRES 1 D 149 AYA SER GLN THR ILE THR VAL GLY PRO TRP GLY GLY PRO SEQRES 2 D 149 GLY GLY ASN GLY TRP ASP ASP GLY SER TYR THR GLY ILE SEQRES 3 D 149 ARG GLN ILE GLU LEU SER TYR LYS GLU ALA ILE GLY SER SEQRES 4 D 149 PHE SER VAL ILE TYR ASP LEU ASN GLY ASP PRO PHE SER SEQRES 5 D 149 GLY PRO LYS HIS THR SER LYS LEU PRO TYR LYS ASN VAL SEQRES 6 D 149 LYS ILE GLU LEU LYS PHE PRO ASP GLU PHE LEU GLU SER SEQRES 7 D 149 VAL SER GLY TYR THR GLY PRO PHE SER ALA LEU ALA THR SEQRES 8 D 149 PRO THR PRO VAL VAL ARG SER LEU THR PHE LYS THR ASN SEQRES 9 D 149 LYS GLY ARG THR PHE GLY PRO TYR GLY ASP GLU GLU GLY SEQRES 10 D 149 THR TYR PHE ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL SEQRES 11 D 149 GLY PHE LYS GLY ARG THR GLY ASP LEU LEU ASP ALA ILE SEQRES 12 D 149 GLY ILE HIS MET SER LEU SEQRES 1 E 149 AYA SER GLN THR ILE THR VAL GLY PRO TRP GLY GLY PRO SEQRES 2 E 149 GLY GLY ASN GLY TRP ASP ASP GLY SER TYR THR GLY ILE SEQRES 3 E 149 ARG GLN ILE GLU LEU SER TYR LYS GLU ALA ILE GLY SER SEQRES 4 E 149 PHE SER VAL ILE TYR ASP LEU ASN GLY ASP PRO PHE SER SEQRES 5 E 149 GLY PRO LYS HIS THR SER LYS LEU PRO TYR LYS ASN VAL SEQRES 6 E 149 LYS ILE GLU LEU LYS PHE PRO ASP GLU PHE LEU GLU SER SEQRES 7 E 149 VAL SER GLY TYR THR GLY PRO PHE SER ALA LEU ALA THR SEQRES 8 E 149 PRO THR PRO VAL VAL ARG SER LEU THR PHE LYS THR ASN SEQRES 9 E 149 LYS GLY ARG THR PHE GLY PRO TYR GLY ASP GLU GLU GLY SEQRES 10 E 149 THR TYR PHE ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL SEQRES 11 E 149 GLY PHE LYS GLY ARG THR GLY ASP LEU LEU ASP ALA ILE SEQRES 12 E 149 GLY ILE HIS MET SER LEU SEQRES 1 F 149 AYA SER GLN THR ILE THR VAL GLY PRO TRP GLY GLY PRO SEQRES 2 F 149 GLY GLY ASN GLY TRP ASP ASP GLY SER TYR THR GLY ILE SEQRES 3 F 149 ARG GLN ILE GLU LEU SER TYR LYS GLU ALA ILE GLY SER SEQRES 4 F 149 PHE SER VAL ILE TYR ASP LEU ASN GLY ASP PRO PHE SER SEQRES 5 F 149 GLY PRO LYS HIS THR SER LYS LEU PRO TYR LYS ASN VAL SEQRES 6 F 149 LYS ILE GLU LEU LYS PHE PRO ASP GLU PHE LEU GLU SER SEQRES 7 F 149 VAL SER GLY TYR THR GLY PRO PHE SER ALA LEU ALA THR SEQRES 8 F 149 PRO THR PRO VAL VAL ARG SER LEU THR PHE LYS THR ASN SEQRES 9 F 149 LYS GLY ARG THR PHE GLY PRO TYR GLY ASP GLU GLU GLY SEQRES 10 F 149 THR TYR PHE ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL SEQRES 11 F 149 GLY PHE LYS GLY ARG THR GLY ASP LEU LEU ASP ALA ILE SEQRES 12 F 149 GLY ILE HIS MET SER LEU SEQRES 1 G 149 AYA SER GLN THR ILE THR VAL GLY PRO TRP GLY GLY PRO SEQRES 2 G 149 GLY GLY ASN GLY TRP ASP ASP GLY SER TYR THR GLY ILE SEQRES 3 G 149 ARG GLN ILE GLU LEU SER TYR LYS GLU ALA ILE GLY SER SEQRES 4 G 149 PHE SER VAL ILE TYR ASP LEU ASN GLY ASP PRO PHE SER SEQRES 5 G 149 GLY PRO LYS HIS THR SER LYS LEU PRO TYR LYS ASN VAL SEQRES 6 G 149 LYS ILE GLU LEU LYS PHE PRO ASP GLU PHE LEU GLU SER SEQRES 7 G 149 VAL SER GLY TYR THR GLY PRO PHE SER ALA LEU ALA THR SEQRES 8 G 149 PRO THR PRO VAL VAL ARG SER LEU THR PHE LYS THR ASN SEQRES 9 G 149 LYS GLY ARG THR PHE GLY PRO TYR GLY ASP GLU GLU GLY SEQRES 10 G 149 THR TYR PHE ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL SEQRES 11 G 149 GLY PHE LYS GLY ARG THR GLY ASP LEU LEU ASP ALA ILE SEQRES 12 G 149 GLY ILE HIS MET SER LEU SEQRES 1 H 149 AYA SER GLN THR ILE THR VAL GLY PRO TRP GLY GLY PRO SEQRES 2 H 149 GLY GLY ASN GLY TRP ASP ASP GLY SER TYR THR GLY ILE SEQRES 3 H 149 ARG GLN ILE GLU LEU SER TYR LYS GLU ALA ILE GLY SER SEQRES 4 H 149 PHE SER VAL ILE TYR ASP LEU ASN GLY ASP PRO PHE SER SEQRES 5 H 149 GLY PRO LYS HIS THR SER LYS LEU PRO TYR LYS ASN VAL SEQRES 6 H 149 LYS ILE GLU LEU LYS PHE PRO ASP GLU PHE LEU GLU SER SEQRES 7 H 149 VAL SER GLY TYR THR GLY PRO PHE SER ALA LEU ALA THR SEQRES 8 H 149 PRO THR PRO VAL VAL ARG SER LEU THR PHE LYS THR ASN SEQRES 9 H 149 LYS GLY ARG THR PHE GLY PRO TYR GLY ASP GLU GLU GLY SEQRES 10 H 149 THR TYR PHE ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL SEQRES 11 H 149 GLY PHE LYS GLY ARG THR GLY ASP LEU LEU ASP ALA ILE SEQRES 12 H 149 GLY ILE HIS MET SER LEU MODRES 1VBO AYA A 1 ALA N-ACETYLALANINE MODRES 1VBO AYA B 1 ALA N-ACETYLALANINE MODRES 1VBO AYA C 1 ALA N-ACETYLALANINE MODRES 1VBO AYA D 1 ALA N-ACETYLALANINE MODRES 1VBO AYA E 1 ALA N-ACETYLALANINE MODRES 1VBO AYA F 1 ALA N-ACETYLALANINE MODRES 1VBO AYA G 1 ALA N-ACETYLALANINE MODRES 1VBO AYA H 1 ALA N-ACETYLALANINE HET AYA A 1 8 HET AYA B 1 8 HET AYA C 1 8 HET AYA D 1 8 HET AYA E 1 8 HET AYA F 1 8 HET AYA G 1 8 HET AYA H 1 8 HET MAN I 1 12 HET MAN I 2 11 HET MAN I 3 11 HET MAN J 1 12 HET MAN J 2 11 HET MAN J 3 11 HET MAN K 1 12 HET MAN K 2 11 HET MAN K 3 11 HET MAN L 1 12 HET MAN L 2 11 HET MAN L 3 11 HET MAN M 1 12 HET MAN M 2 11 HET MAN M 3 11 HET MAN N 1 12 HET MAN N 2 11 HET MAN N 3 11 HET MAN D1405 12 HET MAN F2405 12 HETNAM AYA N-ACETYLALANINE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 1 AYA 8(C5 H9 N O3) FORMUL 9 MAN 20(C6 H12 O6) FORMUL 17 HOH *490(H2 O) HELIX 1 1 PHE D 86 ALA D 90 5 5 SHEET 1 A 8 ASN A 16 ASP A 19 0 SHEET 2 A 8 LEU A 128 THR A 136 -1 O THR A 136 N ASN A 16 SHEET 3 A 8 LEU A 140 SER A 148 -1 O GLY A 144 N LYS A 133 SHEET 4 A 8 ILE A 5 GLY A 11 -1 N ILE A 5 O MET A 147 SHEET 5 A 8 THR B 118 ASN B 126 -1 O PRO B 123 N GLY A 8 SHEET 6 A 8 LEU B 76 GLY B 84 -1 N VAL B 79 O LEU B 122 SHEET 7 A 8 VAL B 95 THR B 103 -1 O LYS B 102 N GLU B 77 SHEET 8 A 8 THR B 108 GLY B 113 -1 O PHE B 109 N PHE B 101 SHEET 1 B 4 ASP A 49 SER A 52 0 SHEET 2 B 4 ILE A 37 LEU A 46 -1 N LEU A 46 O ASP A 49 SHEET 3 B 4 GLY A 25 TYR A 33 -1 N SER A 32 O GLY A 38 SHEET 4 B 4 LYS A 63 GLU A 68 -1 O ILE A 67 N ILE A 29 SHEET 1 C 8 THR A 108 GLY A 113 0 SHEET 2 C 8 VAL A 95 THR A 103 -1 N PHE A 101 O PHE A 109 SHEET 3 C 8 LEU A 76 GLY A 84 -1 N GLU A 77 O LYS A 102 SHEET 4 C 8 THR A 118 ASN A 126 -1 O LEU A 122 N VAL A 79 SHEET 5 C 8 ILE B 5 GLY B 11 -1 O GLY B 8 N PRO A 123 SHEET 6 C 8 LEU B 140 SER B 148 -1 O MET B 147 N ILE B 5 SHEET 7 C 8 LEU B 128 THR B 136 -1 N LYS B 133 O GLY B 144 SHEET 8 C 8 ASN B 16 ASP B 19 -1 N ASN B 16 O THR B 136 SHEET 1 D 4 ASP B 49 SER B 52 0 SHEET 2 D 4 ILE B 37 LEU B 46 -1 N TYR B 44 O PHE B 51 SHEET 3 D 4 GLY B 25 TYR B 33 -1 N SER B 32 O GLY B 38 SHEET 4 D 4 LYS B 63 GLU B 68 -1 O ILE B 67 N ILE B 29 SHEET 1 E 8 ASN C 16 ASP C 19 0 SHEET 2 E 8 LEU C 128 THR C 136 -1 O THR C 136 N ASN C 16 SHEET 3 E 8 LEU C 140 SER C 148 -1 O GLY C 144 N LYS C 133 SHEET 4 E 8 ILE C 5 GLY C 11 -1 N ILE C 5 O MET C 147 SHEET 5 E 8 THR D 118 ASN D 126 -1 O PRO D 123 N GLY C 8 SHEET 6 E 8 LEU D 76 GLY D 84 -1 N VAL D 79 O LEU D 122 SHEET 7 E 8 VAL D 95 THR D 103 -1 O LYS D 102 N GLU D 77 SHEET 8 E 8 THR D 108 GLY D 113 -1 O PHE D 109 N PHE D 101 SHEET 1 F 4 ASP C 49 SER C 52 0 SHEET 2 F 4 ILE C 37 LEU C 46 -1 N LEU C 46 O ASP C 49 SHEET 3 F 4 GLY C 25 TYR C 33 -1 N GLU C 30 O SER C 41 SHEET 4 F 4 LYS C 63 GLU C 68 -1 O ILE C 67 N ILE C 29 SHEET 1 G 8 THR C 108 GLY C 113 0 SHEET 2 G 8 VAL C 95 THR C 103 -1 N PHE C 101 O PHE C 109 SHEET 3 G 8 LEU C 76 GLY C 84 -1 N GLU C 77 O LYS C 102 SHEET 4 G 8 THR C 118 ASN C 126 -1 O THR C 118 N THR C 83 SHEET 5 G 8 ILE D 5 GLY D 11 -1 O GLY D 8 N PRO C 123 SHEET 6 G 8 LEU D 140 SER D 148 -1 O MET D 147 N ILE D 5 SHEET 7 G 8 LEU D 128 THR D 136 -1 N LYS D 133 O GLY D 144 SHEET 8 G 8 ASN D 16 ASP D 19 -1 N TRP D 18 O GLY D 134 SHEET 1 H 4 ASP D 49 SER D 52 0 SHEET 2 H 4 ILE D 37 LEU D 46 -1 N TYR D 44 O PHE D 51 SHEET 3 H 4 GLY D 25 TYR D 33 -1 N SER D 32 O GLY D 38 SHEET 4 H 4 LYS D 63 GLU D 68 -1 O ILE D 67 N ILE D 29 SHEET 1 I 8 ASN E 16 ASP E 19 0 SHEET 2 I 8 LEU E 128 THR E 136 -1 O GLY E 134 N TRP E 18 SHEET 3 I 8 LEU E 140 SER E 148 -1 O GLY E 144 N LYS E 133 SHEET 4 I 8 ILE E 5 GLY E 11 -1 N ILE E 5 O MET E 147 SHEET 5 I 8 THR F 118 ASN F 126 -1 O PRO F 123 N GLY E 8 SHEET 6 I 8 LEU F 76 GLY F 84 -1 N THR F 83 O THR F 118 SHEET 7 I 8 VAL F 95 THR F 103 -1 O LYS F 102 N GLU F 77 SHEET 8 I 8 THR F 108 GLY F 113 -1 O PHE F 109 N PHE F 101 SHEET 1 J 4 ASP E 49 SER E 52 0 SHEET 2 J 4 ILE E 37 LEU E 46 -1 N TYR E 44 O PHE E 51 SHEET 3 J 4 GLY E 25 TYR E 33 -1 N SER E 32 O GLY E 38 SHEET 4 J 4 LYS E 63 GLU E 68 -1 O ILE E 67 N ILE E 29 SHEET 1 K 8 THR E 108 GLY E 113 0 SHEET 2 K 8 VAL E 95 THR E 103 -1 N PHE E 101 O PHE E 109 SHEET 3 K 8 LEU E 76 GLY E 84 -1 N GLU E 77 O LYS E 102 SHEET 4 K 8 THR E 118 ASN E 126 -1 O THR E 118 N THR E 83 SHEET 5 K 8 ILE F 5 GLY F 11 -1 O GLY F 8 N PRO E 123 SHEET 6 K 8 LEU F 140 SER F 148 -1 O MET F 147 N ILE F 5 SHEET 7 K 8 LEU F 128 THR F 136 -1 N LYS F 133 O GLY F 144 SHEET 8 K 8 ASN F 16 ASP F 19 -1 N TRP F 18 O GLY F 134 SHEET 1 L 4 ASP F 49 SER F 52 0 SHEET 2 L 4 ILE F 37 LEU F 46 -1 N LEU F 46 O ASP F 49 SHEET 3 L 4 GLY F 25 TYR F 33 -1 N SER F 32 O GLY F 38 SHEET 4 L 4 LYS F 63 GLU F 68 -1 O ILE F 67 N ILE F 29 SHEET 1 M 8 ASN G 16 ASP G 19 0 SHEET 2 M 8 LEU G 128 THR G 136 -1 O GLY G 134 N TRP G 18 SHEET 3 M 8 LEU G 140 SER G 148 -1 O GLY G 144 N LYS G 133 SHEET 4 M 8 ILE G 5 GLY G 11 -1 N ILE G 5 O MET G 147 SHEET 5 M 8 THR H 118 ASN H 126 -1 O PRO H 123 N GLY G 8 SHEET 6 M 8 LEU H 76 GLY H 84 -1 N THR H 83 O THR H 118 SHEET 7 M 8 VAL H 95 THR H 103 -1 O LYS H 102 N GLU H 77 SHEET 8 M 8 THR H 108 GLY H 113 -1 O PHE H 109 N PHE H 101 SHEET 1 N 4 ASP G 49 SER G 52 0 SHEET 2 N 4 ILE G 37 LEU G 46 -1 N LEU G 46 O ASP G 49 SHEET 3 N 4 GLY G 25 TYR G 33 -1 N SER G 32 O GLY G 38 SHEET 4 N 4 LYS G 63 GLU G 68 -1 O ILE G 67 N ILE G 29 SHEET 1 O 8 THR G 108 GLY G 113 0 SHEET 2 O 8 VAL G 95 THR G 103 -1 N PHE G 101 O PHE G 109 SHEET 3 O 8 LEU G 76 GLY G 84 -1 N GLU G 77 O LYS G 102 SHEET 4 O 8 THR G 118 ASN G 126 -1 O THR G 118 N THR G 83 SHEET 5 O 8 ILE H 5 GLY H 11 -1 O GLY H 8 N PRO G 123 SHEET 6 O 8 LEU H 140 SER H 148 -1 O MET H 147 N ILE H 5 SHEET 7 O 8 LEU H 128 THR H 136 -1 N LYS H 133 O GLY H 144 SHEET 8 O 8 ASN H 16 ASP H 19 -1 N TRP H 18 O GLY H 134 SHEET 1 P 4 ASP H 49 SER H 52 0 SHEET 2 P 4 ILE H 37 LEU H 46 -1 N LEU H 46 O ASP H 49 SHEET 3 P 4 GLY H 25 TYR H 33 -1 N SER H 32 O GLY H 38 SHEET 4 P 4 LYS H 63 GLU H 68 -1 O ILE H 67 N ILE H 29 LINK C AYA A 1 N SER A 2 1555 1555 1.56 LINK C AYA B 1 N SER B 2 1555 1555 1.58 LINK C AYA C 1 N SER C 2 1555 1555 1.58 LINK C AYA D 1 N SER D 2 1555 1555 1.61 LINK C AYA E 1 N SER E 2 1555 1555 1.56 LINK C AYA F 1 N SER F 2 1555 1555 1.65 LINK C AYA G 1 N SER G 2 1555 1555 1.63 LINK C AYA H 1 N SER H 2 1555 1555 1.65 LINK O3 MAN I 1 C1 MAN I 2 1555 1555 1.31 LINK O6 MAN I 1 C1 MAN I 3 1555 1555 1.22 LINK O3 MAN J 1 C1 MAN J 2 1555 1555 1.47 LINK O6 MAN J 1 C1 MAN J 3 1555 1555 1.20 LINK O3 MAN K 1 C1 MAN K 2 1555 1555 1.40 LINK O6 MAN K 1 C1 MAN K 3 1555 1555 1.49 LINK O3 MAN L 1 C1 MAN L 2 1555 1555 1.40 LINK O6 MAN L 1 C1 MAN L 3 1555 1555 1.36 LINK O3 MAN M 1 C1 MAN M 2 1555 1555 1.38 LINK O6 MAN M 1 C1 MAN M 3 1555 1555 1.29 LINK O3 MAN N 1 C1 MAN N 2 1555 1555 1.40 LINK O6 MAN N 1 C1 MAN N 3 1555 1555 1.47 CISPEP 1 GLY A 8 PRO A 9 0 -15.02 CISPEP 2 PHE A 71 PRO A 72 0 -0.17 CISPEP 3 GLY A 110 PRO A 111 0 5.58 CISPEP 4 GLY B 8 PRO B 9 0 -3.05 CISPEP 5 PHE B 71 PRO B 72 0 0.37 CISPEP 6 PHE B 86 SER B 87 0 -5.19 CISPEP 7 PHE C 71 PRO C 72 0 -0.21 CISPEP 8 GLY D 8 PRO D 9 0 5.31 CISPEP 9 PHE D 71 PRO D 72 0 0.52 CISPEP 10 GLY D 110 PRO D 111 0 2.98 CISPEP 11 PHE E 71 PRO E 72 0 0.15 CISPEP 12 PHE F 71 PRO F 72 0 -0.14 CISPEP 13 GLY F 110 PRO F 111 0 1.85 CISPEP 14 PHE G 71 PRO G 72 0 -0.62 CISPEP 15 GLY G 110 PRO G 111 0 10.85 CISPEP 16 PHE H 71 PRO H 72 0 -0.34 CISPEP 17 GLY H 110 PRO H 111 0 6.78 CRYST1 138.217 72.296 59.373 90.00 94.48 90.00 P 1 21 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007235 0.000000 0.000568 0.00000 SCALE2 0.000000 0.013832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016894 0.00000 HETATM 1 N AYA A 1 48.705 48.813 47.754 1.00 29.89 N HETATM 2 CA AYA A 1 47.477 48.154 47.361 1.00 31.91 C HETATM 3 CB AYA A 1 46.306 49.077 47.731 1.00 31.56 C HETATM 4 C AYA A 1 46.823 46.900 46.757 1.00 33.65 C HETATM 5 O AYA A 1 46.651 46.821 45.561 1.00 34.89 O HETATM 6 CT AYA A 1 49.877 48.179 47.815 1.00 28.33 C HETATM 7 OT AYA A 1 50.067 47.336 48.668 1.00 29.03 O HETATM 8 CM AYA A 1 50.955 48.551 46.823 1.00 27.73 C