data_1VBP # _entry.id 1VBP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VBP pdb_00001vbp 10.2210/pdb1vbp/pdb RCSB RCSB006438 ? ? WWPDB D_1000006438 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1J4S 'Crystal structure of artocarpin form I' unspecified PDB 1J4T 'Crystal structure of artocarpin form II' unspecified PDB 1J4U 'Crystal structure of artocarpin-methyl-alpha-mannose complex' unspecified PDB 1VBO 'Crystal structure of artocarpin-mannotriose complex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VBP _pdbx_database_status.recvd_initial_deposition_date 2004-02-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jeyaprakash, A.A.' 1 'Srivastav, A.' 2 'Surolia, A.' 3 'Vijayan, M.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structural basis for the carbohydrate specificities of artocarpin: variation in the length of a loop as a strategy for generating ligand specificity ; J.Mol.Biol. 338 757 770 2004 JMOBAK UK 0022-2836 0070 ? 15099743 10.1016/j.jmb.2004.03.040 1 ;Crystal structures of artocarpin, a Moraceae lectin with mannose specificity, and its complex with methyl-alpha-D-mannose: implications to the generation of carbohydrate specificity ; J.Mol.Biol. 317 237 247 2002 JMOBAK UK 0022-2836 0070 ? 11902840 10.1006/jmbi.2001.5432 2 'A novel mode of carbohydrate recognition in jacalin, a Moraceae plant lectin with a beta-prism fold' NAT.STRUCT.BIOL. 3 596 603 1996 NSBIEW US 1072-8368 2024 ? 8673603 10.1038/nsb0796-596 3 'Structural basis of the carbohydrate specificities of jacalin: an X-ray and modeling study' J.Mol.Biol. 332 217 228 2003 JMOBAK UK 0022-2836 0070 ? 12946359 '10.1016/S0022-2836(03)00901-X' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jeyaprakash, A.A.' 1 ? primary 'Srivastav, A.' 2 ? primary 'Surolia, A.' 3 ? primary 'Vijayan, M.' 4 ? 1 'Pratap, J.V.' 5 ? 1 'Jeyaprakash, A.A.' 6 ? 1 'Rani, P.G.' 7 ? 1 'Sekar, K.' 8 ? 1 'Surolia, A.' 9 ? 1 'Vijayan, M.' 10 ? 2 'Sankaranarayanan, R.' 11 ? 2 'Sekar, K.' 12 ? 2 'Banerjee, R.' 13 ? 2 'Sharma, V.' 14 ? 2 'Surolia, A.' 15 ? 2 'Vijayan, M.' 16 ? 3 'Jeyaprakash, A.A.' 17 ? 3 'Katiyar, S.' 18 ? 3 'Swaminathan, C.P.' 19 ? 3 'Sekar, K.' 20 ? 3 'Surolia, A.' 21 ? 3 'Vijayan, M.' 22 ? # _cell.entry_id 1VBP _cell.length_a 212.637 _cell.length_b 212.637 _cell.length_c 212.637 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VBP _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat artocarpin 16102.951 2 ? ? ? ? 2 branched man 'alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose' 666.578 1 ? ? ? ? 3 branched man 'alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose' 504.438 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 5 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(AYA)SQTITVGSWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFL ESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL ; _entity_poly.pdbx_seq_one_letter_code_can ;ASQTITVGSWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVS GYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 AYA n 1 2 SER n 1 3 GLN n 1 4 THR n 1 5 ILE n 1 6 THR n 1 7 VAL n 1 8 GLY n 1 9 SER n 1 10 TRP n 1 11 GLY n 1 12 GLY n 1 13 PRO n 1 14 GLY n 1 15 GLY n 1 16 ASN n 1 17 GLY n 1 18 TRP n 1 19 ASP n 1 20 ASP n 1 21 GLY n 1 22 SER n 1 23 TYR n 1 24 THR n 1 25 GLY n 1 26 ILE n 1 27 ARG n 1 28 GLN n 1 29 ILE n 1 30 GLU n 1 31 LEU n 1 32 SER n 1 33 TYR n 1 34 LYS n 1 35 GLU n 1 36 ALA n 1 37 ILE n 1 38 GLY n 1 39 SER n 1 40 PHE n 1 41 SER n 1 42 VAL n 1 43 ILE n 1 44 TYR n 1 45 ASP n 1 46 LEU n 1 47 ASN n 1 48 GLY n 1 49 ASP n 1 50 PRO n 1 51 PHE n 1 52 SER n 1 53 GLY n 1 54 PRO n 1 55 LYS n 1 56 HIS n 1 57 THR n 1 58 SER n 1 59 LYS n 1 60 LEU n 1 61 PRO n 1 62 TYR n 1 63 LYS n 1 64 ASN n 1 65 VAL n 1 66 LYS n 1 67 ILE n 1 68 GLU n 1 69 LEU n 1 70 LYS n 1 71 PHE n 1 72 PRO n 1 73 ASP n 1 74 GLU n 1 75 PHE n 1 76 LEU n 1 77 GLU n 1 78 SER n 1 79 VAL n 1 80 SER n 1 81 GLY n 1 82 TYR n 1 83 THR n 1 84 GLY n 1 85 PRO n 1 86 PHE n 1 87 SER n 1 88 ALA n 1 89 LEU n 1 90 ALA n 1 91 THR n 1 92 PRO n 1 93 THR n 1 94 PRO n 1 95 VAL n 1 96 VAL n 1 97 ARG n 1 98 SER n 1 99 LEU n 1 100 THR n 1 101 PHE n 1 102 LYS n 1 103 THR n 1 104 ASN n 1 105 LYS n 1 106 GLY n 1 107 ARG n 1 108 THR n 1 109 PHE n 1 110 GLY n 1 111 PRO n 1 112 TYR n 1 113 GLY n 1 114 ASP n 1 115 GLU n 1 116 GLU n 1 117 GLY n 1 118 THR n 1 119 TYR n 1 120 PHE n 1 121 ASN n 1 122 LEU n 1 123 PRO n 1 124 ILE n 1 125 GLU n 1 126 ASN n 1 127 GLY n 1 128 LEU n 1 129 ILE n 1 130 VAL n 1 131 GLY n 1 132 PHE n 1 133 LYS n 1 134 GLY n 1 135 ARG n 1 136 THR n 1 137 GLY n 1 138 ASP n 1 139 LEU n 1 140 LEU n 1 141 ASP n 1 142 ALA n 1 143 ILE n 1 144 GLY n 1 145 ILE n 1 146 HIS n 1 147 MET n 1 148 SER n 1 149 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Artocarpus integer' _entity_src_nat.pdbx_ncbi_taxonomy_id 3490 _entity_src_nat.genus Artocarpus _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue seeds _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7M1T4_ARTIN _struct_ref.pdbx_db_accession Q7M1T4 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VBP A 1 ? 147 ? Q7M1T4 1 ? 147 ? 1 147 2 1 1VBP B 1 ? 147 ? Q7M1T4 1 ? 147 ? 1 147 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 AYA 'L-peptide linking' n N-ACETYLALANINE ? 'C5 H9 N O3' 131.130 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1VBP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 12.01 _exptl_crystal.density_percent_sol 89.68 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_details 'Ammonium Sulphate, Phosphate Buffer, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2003-09-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'OSMIC mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1VBP _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 3.5 _reflns.number_obs 19233 _reflns.number_all 19233 _reflns.percent_possible_obs 90.7 _reflns.pdbx_Rmerge_I_obs 0.161 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.5 _reflns_shell.d_res_low 3.62 _reflns_shell.percent_possible_all 87.7 _reflns_shell.Rmerge_I_obs 0.427 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1816 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1VBP _refine.ls_number_reflns_obs 19221 _refine.ls_number_reflns_all 48504 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 11093993.02 _refine.pdbx_data_cutoff_low_absF .000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.92 _refine.ls_d_res_high 3.50 _refine.ls_percent_reflns_obs 90.8 _refine.ls_R_factor_obs 0.263 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.263 _refine.ls_R_factor_R_free 0.292 _refine.ls_R_factor_R_free_error .009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 979 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 49.7 _refine.aniso_B[1][1] -.02 _refine.aniso_B[2][2] .01 _refine.aniso_B[3][3] .01 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol .191774 _refine.solvent_model_param_bsol 10 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1J4S _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1VBP _refine_analyze.Luzzati_coordinate_error_obs .50 _refine_analyze.Luzzati_sigma_a_obs .67 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free .59 _refine_analyze.Luzzati_sigma_a_free .93 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2280 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 102 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 2383 _refine_hist.d_res_high 3.50 _refine_hist.d_res_low 19.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d .009 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.45 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 7.81 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 12.24 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 18.41 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 26.02 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.50 _refine_ls_shell.d_res_low 3.72 _refine_ls_shell.number_reflns_R_work 2869 _refine_ls_shell.R_factor_R_work 0.332 _refine_ls_shell.percent_reflns_obs 87.6 _refine_ls_shell.R_factor_R_free 0.415 _refine_ls_shell.R_factor_R_free_error .034 _refine_ls_shell.percent_reflns_R_free 5.1 _refine_ls_shell.number_reflns_R_free 153 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM HET.TOP 'X-RAY DIFFRACTION' 3 CARBOHYDRATE.PARAM CARBOHYDRATE.TOP 'X-RAY DIFFRACTION' 4 CIS4.PARAM ? 'X-RAY DIFFRACTION' 5 HET.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1VBP _struct.title 'Crystal structure of artocarpin-mannopentose complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VBP _struct_keywords.pdbx_keywords 'PLANT PROTEIN' _struct_keywords.text 'beta-prism, mannose-specific, lectin, jacalin-like, PLANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A AYA 1 C ? ? ? 1_555 A SER 2 N ? ? A AYA 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.480 ? ? covale2 covale both ? B AYA 1 C ? ? ? 1_555 B SER 2 N ? ? B AYA 1 B SER 2 1_555 ? ? ? ? ? ? ? 1.466 ? ? covale3 covale both ? C MAN . O6 ? ? ? 1_555 C MAN . C1 ? ? C MAN 1 C MAN 2 1_555 ? ? ? ? ? ? ? 1.402 ? ? covale4 covale both ? C MAN . O3 ? ? ? 1_555 C MAN . C1 ? ? C MAN 1 C MAN 4 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale5 covale both ? C MAN . O3 ? ? ? 1_555 C MAN . C1 ? ? C MAN 2 C MAN 3 1_555 ? ? ? ? ? ? ? 1.397 ? ? covale6 covale both ? D MAN . O3 ? ? ? 1_555 D MAN . C1 ? ? D MAN 1 D MAN 2 1_555 ? ? ? ? ? ? ? 1.408 ? ? covale7 covale both ? D MAN . O6 ? ? ? 1_555 D MAN . C1 ? ? D MAN 1 D MAN 3 1_555 ? ? ? ? ? ? ? 1.525 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 71 A . ? PHE 71 A PRO 72 A ? PRO 72 A 1 0.44 2 GLY 110 A . ? GLY 110 A PRO 111 A ? PRO 111 A 1 0.59 3 PHE 71 B . ? PHE 71 B PRO 72 B ? PRO 72 B 1 -1.07 4 GLY 110 B . ? GLY 110 B PRO 111 B ? PRO 111 B 1 0.03 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 4 ? C ? 4 ? D ? 7 ? E ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel D 6 7 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 17 ? ASP A 19 ? GLY A 17 ASP A 19 A 2 LEU A 128 ? THR A 136 ? LEU A 128 THR A 136 A 3 LEU A 140 ? SER A 148 ? LEU A 140 SER A 148 A 4 ILE A 5 ? GLY A 11 ? ILE A 5 GLY A 11 A 5 THR B 118 ? ASN B 126 ? THR B 118 ASN B 126 A 6 LEU B 76 ? GLY B 84 ? LEU B 76 GLY B 84 A 7 VAL B 95 ? THR B 103 ? VAL B 95 THR B 103 A 8 THR B 108 ? GLY B 113 ? THR B 108 GLY B 113 B 1 ASP A 49 ? SER A 52 ? ASP A 49 SER A 52 B 2 ILE A 37 ? LEU A 46 ? ILE A 37 LEU A 46 B 3 GLY A 25 ? TYR A 33 ? GLY A 25 TYR A 33 B 4 LYS A 63 ? GLU A 68 ? LYS A 63 GLU A 68 C 1 PRO A 94 ? VAL A 96 ? PRO A 94 VAL A 96 C 2 LEU A 76 ? PRO A 85 ? LEU A 76 PRO A 85 C 3 SER A 98 ? THR A 103 ? SER A 98 THR A 103 C 4 THR A 108 ? GLY A 113 ? THR A 108 GLY A 113 D 1 PRO A 94 ? VAL A 96 ? PRO A 94 VAL A 96 D 2 LEU A 76 ? PRO A 85 ? LEU A 76 PRO A 85 D 3 THR A 118 ? ASN A 126 ? THR A 118 ASN A 126 D 4 ILE B 5 ? GLY B 11 ? ILE B 5 GLY B 11 D 5 LEU B 140 ? SER B 148 ? LEU B 140 SER B 148 D 6 LEU B 128 ? THR B 136 ? LEU B 128 THR B 136 D 7 ASN B 16 ? ASP B 19 ? ASN B 16 ASP B 19 E 1 ASP B 49 ? SER B 52 ? ASP B 49 SER B 52 E 2 ILE B 37 ? LEU B 46 ? ILE B 37 LEU B 46 E 3 GLY B 25 ? TYR B 33 ? GLY B 25 TYR B 33 E 4 LYS B 63 ? GLU B 68 ? LYS B 63 GLU B 68 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP A 18 ? N TRP A 18 O GLY A 134 ? O GLY A 134 A 2 3 N LYS A 133 ? N LYS A 133 O GLY A 144 ? O GLY A 144 A 3 4 O ILE A 145 ? O ILE A 145 N VAL A 7 ? N VAL A 7 A 4 5 N GLY A 8 ? N GLY A 8 O PRO B 123 ? O PRO B 123 A 5 6 O THR B 118 ? O THR B 118 N THR B 83 ? N THR B 83 A 6 7 N SER B 80 ? N SER B 80 O THR B 100 ? O THR B 100 A 7 8 N PHE B 101 ? N PHE B 101 O PHE B 109 ? O PHE B 109 B 1 2 O ASP A 49 ? O ASP A 49 N LEU A 46 ? N LEU A 46 B 2 3 O ILE A 43 ? O ILE A 43 N GLN A 28 ? N GLN A 28 B 3 4 N TYR A 33 ? N TYR A 33 O LYS A 63 ? O LYS A 63 C 1 2 O VAL A 95 ? O VAL A 95 N GLY A 84 ? N GLY A 84 C 2 3 N SER A 80 ? N SER A 80 O THR A 100 ? O THR A 100 C 3 4 N PHE A 101 ? N PHE A 101 O PHE A 109 ? O PHE A 109 D 1 2 O VAL A 95 ? O VAL A 95 N GLY A 84 ? N GLY A 84 D 2 3 N VAL A 79 ? N VAL A 79 O LEU A 122 ? O LEU A 122 D 3 4 N PRO A 123 ? N PRO A 123 O GLY B 8 ? O GLY B 8 D 4 5 N ILE B 5 ? N ILE B 5 O MET B 147 ? O MET B 147 D 5 6 O HIS B 146 ? O HIS B 146 N VAL B 130 ? N VAL B 130 D 6 7 O THR B 136 ? O THR B 136 N ASN B 16 ? N ASN B 16 E 1 2 O PHE B 51 ? O PHE B 51 N TYR B 44 ? N TYR B 44 E 2 3 O ASP B 45 ? O ASP B 45 N GLY B 25 ? N GLY B 25 E 3 4 N TYR B 33 ? N TYR B 33 O LYS B 63 ? O LYS B 63 # _database_PDB_matrix.entry_id 1VBP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] .000000 _database_PDB_matrix.origx[1][3] .000000 _database_PDB_matrix.origx[2][1] .000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] .000000 _database_PDB_matrix.origx[3][1] .000000 _database_PDB_matrix.origx[3][2] .000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] .00000 _database_PDB_matrix.origx_vector[2] .00000 _database_PDB_matrix.origx_vector[3] .00000 # _atom_sites.entry_id 1VBP _atom_sites.fract_transf_matrix[1][1] .004703 _atom_sites.fract_transf_matrix[1][2] .000000 _atom_sites.fract_transf_matrix[1][3] .000000 _atom_sites.fract_transf_matrix[2][1] .000000 _atom_sites.fract_transf_matrix[2][2] .004703 _atom_sites.fract_transf_matrix[2][3] .000000 _atom_sites.fract_transf_matrix[3][1] .000000 _atom_sites.fract_transf_matrix[3][2] .000000 _atom_sites.fract_transf_matrix[3][3] .004703 _atom_sites.fract_transf_vector[1] .00000 _atom_sites.fract_transf_vector[2] .00000 _atom_sites.fract_transf_vector[3] .00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'AYA A 1 HAS WRONG CHIRALITY AT ATOM CA' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 AYA 1 1 1 AYA AYA A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 TRP 10 10 10 TRP TRP A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 TRP 18 18 18 TRP TRP A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 TYR 112 112 112 TYR TYR A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 TYR 119 119 119 TYR TYR A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 LYS 133 133 133 LYS LYS A . n A 1 134 GLY 134 134 134 GLY GLY A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 ASP 138 138 138 ASP ASP A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 ILE 145 145 145 ILE ILE A . n A 1 146 HIS 146 146 146 HIS HIS A . n A 1 147 MET 147 147 147 MET MET A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 LEU 149 149 149 LEU LEU A . n B 1 1 AYA 1 1 1 AYA AYA B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 GLN 3 3 3 GLN GLN B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 ILE 5 5 5 ILE ILE B . n B 1 6 THR 6 6 6 THR THR B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 SER 9 9 9 SER SER B . n B 1 10 TRP 10 10 10 TRP TRP B . n B 1 11 GLY 11 11 11 GLY GLY B . n B 1 12 GLY 12 12 12 GLY GLY B . n B 1 13 PRO 13 13 13 PRO PRO B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 ASN 16 16 16 ASN ASN B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 TRP 18 18 18 TRP TRP B . n B 1 19 ASP 19 19 19 ASP ASP B . n B 1 20 ASP 20 20 20 ASP ASP B . n B 1 21 GLY 21 21 21 GLY GLY B . n B 1 22 SER 22 22 22 SER SER B . n B 1 23 TYR 23 23 23 TYR TYR B . n B 1 24 THR 24 24 24 THR THR B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 ILE 26 26 26 ILE ILE B . n B 1 27 ARG 27 27 27 ARG ARG B . n B 1 28 GLN 28 28 28 GLN GLN B . n B 1 29 ILE 29 29 29 ILE ILE B . n B 1 30 GLU 30 30 30 GLU GLU B . n B 1 31 LEU 31 31 31 LEU LEU B . n B 1 32 SER 32 32 32 SER SER B . n B 1 33 TYR 33 33 33 TYR TYR B . n B 1 34 LYS 34 34 34 LYS LYS B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 ILE 37 37 37 ILE ILE B . n B 1 38 GLY 38 38 38 GLY GLY B . n B 1 39 SER 39 39 39 SER SER B . n B 1 40 PHE 40 40 40 PHE PHE B . n B 1 41 SER 41 41 41 SER SER B . n B 1 42 VAL 42 42 42 VAL VAL B . n B 1 43 ILE 43 43 43 ILE ILE B . n B 1 44 TYR 44 44 44 TYR TYR B . n B 1 45 ASP 45 45 45 ASP ASP B . n B 1 46 LEU 46 46 46 LEU LEU B . n B 1 47 ASN 47 47 47 ASN ASN B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 ASP 49 49 49 ASP ASP B . n B 1 50 PRO 50 50 50 PRO PRO B . n B 1 51 PHE 51 51 51 PHE PHE B . n B 1 52 SER 52 52 52 SER SER B . n B 1 53 GLY 53 53 53 GLY GLY B . n B 1 54 PRO 54 54 54 PRO PRO B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 HIS 56 56 56 HIS HIS B . n B 1 57 THR 57 57 57 THR THR B . n B 1 58 SER 58 58 58 SER SER B . n B 1 59 LYS 59 59 59 LYS LYS B . n B 1 60 LEU 60 60 60 LEU LEU B . n B 1 61 PRO 61 61 61 PRO PRO B . n B 1 62 TYR 62 62 62 TYR TYR B . n B 1 63 LYS 63 63 63 LYS LYS B . n B 1 64 ASN 64 64 64 ASN ASN B . n B 1 65 VAL 65 65 65 VAL VAL B . n B 1 66 LYS 66 66 66 LYS LYS B . n B 1 67 ILE 67 67 67 ILE ILE B . n B 1 68 GLU 68 68 68 GLU GLU B . n B 1 69 LEU 69 69 69 LEU LEU B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 PHE 71 71 71 PHE PHE B . n B 1 72 PRO 72 72 72 PRO PRO B . n B 1 73 ASP 73 73 73 ASP ASP B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 PHE 75 75 75 PHE PHE B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 GLU 77 77 77 GLU GLU B . n B 1 78 SER 78 78 78 SER SER B . n B 1 79 VAL 79 79 79 VAL VAL B . n B 1 80 SER 80 80 80 SER SER B . n B 1 81 GLY 81 81 81 GLY GLY B . n B 1 82 TYR 82 82 82 TYR TYR B . n B 1 83 THR 83 83 83 THR THR B . n B 1 84 GLY 84 84 84 GLY GLY B . n B 1 85 PRO 85 85 85 PRO PRO B . n B 1 86 PHE 86 86 86 PHE PHE B . n B 1 87 SER 87 87 87 SER SER B . n B 1 88 ALA 88 88 88 ALA ALA B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 ALA 90 90 90 ALA ALA B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 PRO 92 92 92 PRO PRO B . n B 1 93 THR 93 93 93 THR THR B . n B 1 94 PRO 94 94 94 PRO PRO B . n B 1 95 VAL 95 95 95 VAL VAL B . n B 1 96 VAL 96 96 96 VAL VAL B . n B 1 97 ARG 97 97 97 ARG ARG B . n B 1 98 SER 98 98 98 SER SER B . n B 1 99 LEU 99 99 99 LEU LEU B . n B 1 100 THR 100 100 100 THR THR B . n B 1 101 PHE 101 101 101 PHE PHE B . n B 1 102 LYS 102 102 102 LYS LYS B . n B 1 103 THR 103 103 103 THR THR B . n B 1 104 ASN 104 104 104 ASN ASN B . n B 1 105 LYS 105 105 105 LYS LYS B . n B 1 106 GLY 106 106 106 GLY GLY B . n B 1 107 ARG 107 107 107 ARG ARG B . n B 1 108 THR 108 108 108 THR THR B . n B 1 109 PHE 109 109 109 PHE PHE B . n B 1 110 GLY 110 110 110 GLY GLY B . n B 1 111 PRO 111 111 111 PRO PRO B . n B 1 112 TYR 112 112 112 TYR TYR B . n B 1 113 GLY 113 113 113 GLY GLY B . n B 1 114 ASP 114 114 114 ASP ASP B . n B 1 115 GLU 115 115 115 GLU GLU B . n B 1 116 GLU 116 116 116 GLU GLU B . n B 1 117 GLY 117 117 117 GLY GLY B . n B 1 118 THR 118 118 118 THR THR B . n B 1 119 TYR 119 119 119 TYR TYR B . n B 1 120 PHE 120 120 120 PHE PHE B . n B 1 121 ASN 121 121 121 ASN ASN B . n B 1 122 LEU 122 122 122 LEU LEU B . n B 1 123 PRO 123 123 123 PRO PRO B . n B 1 124 ILE 124 124 124 ILE ILE B . n B 1 125 GLU 125 125 125 GLU GLU B . n B 1 126 ASN 126 126 126 ASN ASN B . n B 1 127 GLY 127 127 127 GLY GLY B . n B 1 128 LEU 128 128 128 LEU LEU B . n B 1 129 ILE 129 129 129 ILE ILE B . n B 1 130 VAL 130 130 130 VAL VAL B . n B 1 131 GLY 131 131 131 GLY GLY B . n B 1 132 PHE 132 132 132 PHE PHE B . n B 1 133 LYS 133 133 133 LYS LYS B . n B 1 134 GLY 134 134 134 GLY GLY B . n B 1 135 ARG 135 135 135 ARG ARG B . n B 1 136 THR 136 136 136 THR THR B . n B 1 137 GLY 137 137 137 GLY GLY B . n B 1 138 ASP 138 138 138 ASP ASP B . n B 1 139 LEU 139 139 139 LEU LEU B . n B 1 140 LEU 140 140 140 LEU LEU B . n B 1 141 ASP 141 141 141 ASP ASP B . n B 1 142 ALA 142 142 142 ALA ALA B . n B 1 143 ILE 143 143 143 ILE ILE B . n B 1 144 GLY 144 144 144 GLY GLY B . n B 1 145 ILE 145 145 145 ILE ILE B . n B 1 146 HIS 146 146 146 HIS HIS B . n B 1 147 MET 147 147 147 MET MET B . n B 1 148 SER 148 148 148 SER SER B . n B 1 149 LEU 149 149 149 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 SO4 1 502 502 SO4 SO4 A . F 4 SO4 1 503 503 SO4 SO4 A . G 4 SO4 1 500 500 SO4 SO4 B . H 4 SO4 1 501 501 SO4 SO4 B . I 4 SO4 1 511 511 SO4 SO4 B . J 5 HOH 1 419 419 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A AYA 1 A AYA 1 ? ALA N-ACETYLALANINE 2 B AYA 1 B AYA 1 ? ALA N-ACETYLALANINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PQS hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E,F,G,H,I,J 2 1,3,4 A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8540 ? 1 MORE -83 ? 1 'SSA (A^2)' 25860 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 18_645 -x+5/4,z-1/4,y+1/4 -1.0000000000 0.0000000000 0.0000000000 265.7962500000 0.0000000000 0.0000000000 1.0000000000 -53.1592500000 0.0000000000 1.0000000000 0.0000000000 53.1592500000 3 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 4 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B SO4 511 ? I SO4 . 2 1 B SO4 511 ? I SO4 . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-06-15 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 2 0 2020-07-29 6 'Structure model' 2 1 2023-10-25 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' Advisory 6 5 'Structure model' 'Atomic model' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Structure summary' 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Database references' 12 6 'Structure model' 'Refinement description' 13 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' atom_site 3 5 'Structure model' chem_comp 4 5 'Structure model' database_PDB_caveat 5 5 'Structure model' entity 6 5 'Structure model' pdbx_branch_scheme 7 5 'Structure model' pdbx_chem_comp_identifier 8 5 'Structure model' pdbx_entity_branch 9 5 'Structure model' pdbx_entity_branch_descriptor 10 5 'Structure model' pdbx_entity_branch_link 11 5 'Structure model' pdbx_entity_branch_list 12 5 'Structure model' pdbx_entity_nonpoly 13 5 'Structure model' pdbx_nonpoly_scheme 14 5 'Structure model' pdbx_struct_assembly_gen 15 5 'Structure model' pdbx_struct_special_symmetry 16 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 17 5 'Structure model' struct_asym 18 5 'Structure model' struct_conn 19 5 'Structure model' struct_site 20 5 'Structure model' struct_site_gen 21 6 'Structure model' chem_comp 22 6 'Structure model' chem_comp_atom 23 6 'Structure model' chem_comp_bond 24 6 'Structure model' database_2 25 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_atom_site.B_iso_or_equiv' 4 5 'Structure model' '_atom_site.Cartn_x' 5 5 'Structure model' '_atom_site.Cartn_y' 6 5 'Structure model' '_atom_site.Cartn_z' 7 5 'Structure model' '_atom_site.auth_asym_id' 8 5 'Structure model' '_atom_site.auth_atom_id' 9 5 'Structure model' '_atom_site.auth_comp_id' 10 5 'Structure model' '_atom_site.auth_seq_id' 11 5 'Structure model' '_atom_site.label_asym_id' 12 5 'Structure model' '_atom_site.label_atom_id' 13 5 'Structure model' '_atom_site.label_comp_id' 14 5 'Structure model' '_atom_site.label_entity_id' 15 5 'Structure model' '_atom_site.type_symbol' 16 5 'Structure model' '_chem_comp.name' 17 5 'Structure model' '_chem_comp.type' 18 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 19 5 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 20 5 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_asym_id' 21 5 'Structure model' '_struct_conn.pdbx_dist_value' 22 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 6 'Structure model' '_chem_comp.pdbx_synonyms' 38 6 'Structure model' '_database_2.pdbx_DOI' 39 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 MAR345 'data collection' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 S _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 SO4 _pdbx_validate_symm_contact.auth_seq_id_1 511 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O2 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 SO4 _pdbx_validate_symm_contact.auth_seq_id_2 511 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 9_555 _pdbx_validate_symm_contact.dist 1.62 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 AYA _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 SER _pdbx_validate_rmsd_bond.auth_seq_id_2 2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.480 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation 0.144 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A SER 2 ? ? CA A SER 2 ? ? CB A SER 2 ? ? 121.98 110.50 11.48 1.50 N 2 1 CA B AYA 1 ? ? C B AYA 1 ? ? N B SER 2 ? ? 134.76 117.20 17.56 2.20 Y 3 1 O B AYA 1 ? ? C B AYA 1 ? ? N B SER 2 ? ? 101.18 122.70 -21.52 1.60 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -47.45 -174.75 2 1 SER A 9 ? ? 90.56 73.06 3 1 TYR A 23 ? ? -125.35 -137.39 4 1 LEU A 31 ? ? -175.54 137.96 5 1 LYS A 34 ? ? -159.76 -95.44 6 1 LYS A 70 ? ? -70.47 48.01 7 1 ALA A 88 ? ? -68.28 2.78 8 1 LEU A 140 ? ? -52.79 108.16 9 1 SER B 2 ? ? 3.90 140.01 10 1 SER B 9 ? ? 105.56 56.50 11 1 ASP B 19 ? ? -164.19 107.52 12 1 TYR B 23 ? ? -122.56 -154.20 13 1 LYS B 34 ? ? -147.28 -102.41 14 1 PRO B 54 ? ? -49.24 152.95 15 1 LEU B 60 ? ? -38.88 150.06 16 1 PRO B 85 ? ? -51.85 -169.25 17 1 PHE B 86 ? ? -172.19 138.88 18 1 SER B 87 ? ? -67.50 -146.09 19 1 ALA B 88 ? ? 25.22 26.20 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 AYA _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 1 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 SER _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 2 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 146.03 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 AYA A 1 ? ? 10.19 2 1 AYA B 1 ? ? 14.60 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id AYA _pdbx_validate_chiral.auth_seq_id 1 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 B SO4 511 ? O3 ? I SO4 1 O3 2 1 N 1 B SO4 511 ? O4 ? I SO4 1 O4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 AYA N N N N 74 AYA CA C N S 75 AYA CB C N N 76 AYA C C N N 77 AYA O O N N 78 AYA OXT O N N 79 AYA CT C N N 80 AYA OT O N N 81 AYA CM C N N 82 AYA H H N N 83 AYA HA H N N 84 AYA HB1 H N N 85 AYA HB2 H N N 86 AYA HB3 H N N 87 AYA HXT H N N 88 AYA HM1 H N N 89 AYA HM2 H N N 90 AYA HM3 H N N 91 GLN N N N N 92 GLN CA C N S 93 GLN C C N N 94 GLN O O N N 95 GLN CB C N N 96 GLN CG C N N 97 GLN CD C N N 98 GLN OE1 O N N 99 GLN NE2 N N N 100 GLN OXT O N N 101 GLN H H N N 102 GLN H2 H N N 103 GLN HA H N N 104 GLN HB2 H N N 105 GLN HB3 H N N 106 GLN HG2 H N N 107 GLN HG3 H N N 108 GLN HE21 H N N 109 GLN HE22 H N N 110 GLN HXT H N N 111 GLU N N N N 112 GLU CA C N S 113 GLU C C N N 114 GLU O O N N 115 GLU CB C N N 116 GLU CG C N N 117 GLU CD C N N 118 GLU OE1 O N N 119 GLU OE2 O N N 120 GLU OXT O N N 121 GLU H H N N 122 GLU H2 H N N 123 GLU HA H N N 124 GLU HB2 H N N 125 GLU HB3 H N N 126 GLU HG2 H N N 127 GLU HG3 H N N 128 GLU HE2 H N N 129 GLU HXT H N N 130 GLY N N N N 131 GLY CA C N N 132 GLY C C N N 133 GLY O O N N 134 GLY OXT O N N 135 GLY H H N N 136 GLY H2 H N N 137 GLY HA2 H N N 138 GLY HA3 H N N 139 GLY HXT H N N 140 HIS N N N N 141 HIS CA C N S 142 HIS C C N N 143 HIS O O N N 144 HIS CB C N N 145 HIS CG C Y N 146 HIS ND1 N Y N 147 HIS CD2 C Y N 148 HIS CE1 C Y N 149 HIS NE2 N Y N 150 HIS OXT O N N 151 HIS H H N N 152 HIS H2 H N N 153 HIS HA H N N 154 HIS HB2 H N N 155 HIS HB3 H N N 156 HIS HD1 H N N 157 HIS HD2 H N N 158 HIS HE1 H N N 159 HIS HE2 H N N 160 HIS HXT H N N 161 HOH O O N N 162 HOH H1 H N N 163 HOH H2 H N N 164 ILE N N N N 165 ILE CA C N S 166 ILE C C N N 167 ILE O O N N 168 ILE CB C N S 169 ILE CG1 C N N 170 ILE CG2 C N N 171 ILE CD1 C N N 172 ILE OXT O N N 173 ILE H H N N 174 ILE H2 H N N 175 ILE HA H N N 176 ILE HB H N N 177 ILE HG12 H N N 178 ILE HG13 H N N 179 ILE HG21 H N N 180 ILE HG22 H N N 181 ILE HG23 H N N 182 ILE HD11 H N N 183 ILE HD12 H N N 184 ILE HD13 H N N 185 ILE HXT H N N 186 LEU N N N N 187 LEU CA C N S 188 LEU C C N N 189 LEU O O N N 190 LEU CB C N N 191 LEU CG C N N 192 LEU CD1 C N N 193 LEU CD2 C N N 194 LEU OXT O N N 195 LEU H H N N 196 LEU H2 H N N 197 LEU HA H N N 198 LEU HB2 H N N 199 LEU HB3 H N N 200 LEU HG H N N 201 LEU HD11 H N N 202 LEU HD12 H N N 203 LEU HD13 H N N 204 LEU HD21 H N N 205 LEU HD22 H N N 206 LEU HD23 H N N 207 LEU HXT H N N 208 LYS N N N N 209 LYS CA C N S 210 LYS C C N N 211 LYS O O N N 212 LYS CB C N N 213 LYS CG C N N 214 LYS CD C N N 215 LYS CE C N N 216 LYS NZ N N N 217 LYS OXT O N N 218 LYS H H N N 219 LYS H2 H N N 220 LYS HA H N N 221 LYS HB2 H N N 222 LYS HB3 H N N 223 LYS HG2 H N N 224 LYS HG3 H N N 225 LYS HD2 H N N 226 LYS HD3 H N N 227 LYS HE2 H N N 228 LYS HE3 H N N 229 LYS HZ1 H N N 230 LYS HZ2 H N N 231 LYS HZ3 H N N 232 LYS HXT H N N 233 MAN C1 C N S 234 MAN C2 C N S 235 MAN C3 C N S 236 MAN C4 C N S 237 MAN C5 C N R 238 MAN C6 C N N 239 MAN O1 O N N 240 MAN O2 O N N 241 MAN O3 O N N 242 MAN O4 O N N 243 MAN O5 O N N 244 MAN O6 O N N 245 MAN H1 H N N 246 MAN H2 H N N 247 MAN H3 H N N 248 MAN H4 H N N 249 MAN H5 H N N 250 MAN H61 H N N 251 MAN H62 H N N 252 MAN HO1 H N N 253 MAN HO2 H N N 254 MAN HO3 H N N 255 MAN HO4 H N N 256 MAN HO6 H N N 257 MET N N N N 258 MET CA C N S 259 MET C C N N 260 MET O O N N 261 MET CB C N N 262 MET CG C N N 263 MET SD S N N 264 MET CE C N N 265 MET OXT O N N 266 MET H H N N 267 MET H2 H N N 268 MET HA H N N 269 MET HB2 H N N 270 MET HB3 H N N 271 MET HG2 H N N 272 MET HG3 H N N 273 MET HE1 H N N 274 MET HE2 H N N 275 MET HE3 H N N 276 MET HXT H N N 277 PHE N N N N 278 PHE CA C N S 279 PHE C C N N 280 PHE O O N N 281 PHE CB C N N 282 PHE CG C Y N 283 PHE CD1 C Y N 284 PHE CD2 C Y N 285 PHE CE1 C Y N 286 PHE CE2 C Y N 287 PHE CZ C Y N 288 PHE OXT O N N 289 PHE H H N N 290 PHE H2 H N N 291 PHE HA H N N 292 PHE HB2 H N N 293 PHE HB3 H N N 294 PHE HD1 H N N 295 PHE HD2 H N N 296 PHE HE1 H N N 297 PHE HE2 H N N 298 PHE HZ H N N 299 PHE HXT H N N 300 PRO N N N N 301 PRO CA C N S 302 PRO C C N N 303 PRO O O N N 304 PRO CB C N N 305 PRO CG C N N 306 PRO CD C N N 307 PRO OXT O N N 308 PRO H H N N 309 PRO HA H N N 310 PRO HB2 H N N 311 PRO HB3 H N N 312 PRO HG2 H N N 313 PRO HG3 H N N 314 PRO HD2 H N N 315 PRO HD3 H N N 316 PRO HXT H N N 317 SER N N N N 318 SER CA C N S 319 SER C C N N 320 SER O O N N 321 SER CB C N N 322 SER OG O N N 323 SER OXT O N N 324 SER H H N N 325 SER H2 H N N 326 SER HA H N N 327 SER HB2 H N N 328 SER HB3 H N N 329 SER HG H N N 330 SER HXT H N N 331 SO4 S S N N 332 SO4 O1 O N N 333 SO4 O2 O N N 334 SO4 O3 O N N 335 SO4 O4 O N N 336 THR N N N N 337 THR CA C N S 338 THR C C N N 339 THR O O N N 340 THR CB C N R 341 THR OG1 O N N 342 THR CG2 C N N 343 THR OXT O N N 344 THR H H N N 345 THR H2 H N N 346 THR HA H N N 347 THR HB H N N 348 THR HG1 H N N 349 THR HG21 H N N 350 THR HG22 H N N 351 THR HG23 H N N 352 THR HXT H N N 353 TRP N N N N 354 TRP CA C N S 355 TRP C C N N 356 TRP O O N N 357 TRP CB C N N 358 TRP CG C Y N 359 TRP CD1 C Y N 360 TRP CD2 C Y N 361 TRP NE1 N Y N 362 TRP CE2 C Y N 363 TRP CE3 C Y N 364 TRP CZ2 C Y N 365 TRP CZ3 C Y N 366 TRP CH2 C Y N 367 TRP OXT O N N 368 TRP H H N N 369 TRP H2 H N N 370 TRP HA H N N 371 TRP HB2 H N N 372 TRP HB3 H N N 373 TRP HD1 H N N 374 TRP HE1 H N N 375 TRP HE3 H N N 376 TRP HZ2 H N N 377 TRP HZ3 H N N 378 TRP HH2 H N N 379 TRP HXT H N N 380 TYR N N N N 381 TYR CA C N S 382 TYR C C N N 383 TYR O O N N 384 TYR CB C N N 385 TYR CG C Y N 386 TYR CD1 C Y N 387 TYR CD2 C Y N 388 TYR CE1 C Y N 389 TYR CE2 C Y N 390 TYR CZ C Y N 391 TYR OH O N N 392 TYR OXT O N N 393 TYR H H N N 394 TYR H2 H N N 395 TYR HA H N N 396 TYR HB2 H N N 397 TYR HB3 H N N 398 TYR HD1 H N N 399 TYR HD2 H N N 400 TYR HE1 H N N 401 TYR HE2 H N N 402 TYR HH H N N 403 TYR HXT H N N 404 VAL N N N N 405 VAL CA C N S 406 VAL C C N N 407 VAL O O N N 408 VAL CB C N N 409 VAL CG1 C N N 410 VAL CG2 C N N 411 VAL OXT O N N 412 VAL H H N N 413 VAL H2 H N N 414 VAL HA H N N 415 VAL HB H N N 416 VAL HG11 H N N 417 VAL HG12 H N N 418 VAL HG13 H N N 419 VAL HG21 H N N 420 VAL HG22 H N N 421 VAL HG23 H N N 422 VAL HXT H N N 423 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 AYA N CA sing N N 70 AYA N CT sing N N 71 AYA N H sing N N 72 AYA CA CB sing N N 73 AYA CA C sing N N 74 AYA CA HA sing N N 75 AYA CB HB1 sing N N 76 AYA CB HB2 sing N N 77 AYA CB HB3 sing N N 78 AYA C O doub N N 79 AYA C OXT sing N N 80 AYA OXT HXT sing N N 81 AYA CT OT doub N N 82 AYA CT CM sing N N 83 AYA CM HM1 sing N N 84 AYA CM HM2 sing N N 85 AYA CM HM3 sing N N 86 GLN N CA sing N N 87 GLN N H sing N N 88 GLN N H2 sing N N 89 GLN CA C sing N N 90 GLN CA CB sing N N 91 GLN CA HA sing N N 92 GLN C O doub N N 93 GLN C OXT sing N N 94 GLN CB CG sing N N 95 GLN CB HB2 sing N N 96 GLN CB HB3 sing N N 97 GLN CG CD sing N N 98 GLN CG HG2 sing N N 99 GLN CG HG3 sing N N 100 GLN CD OE1 doub N N 101 GLN CD NE2 sing N N 102 GLN NE2 HE21 sing N N 103 GLN NE2 HE22 sing N N 104 GLN OXT HXT sing N N 105 GLU N CA sing N N 106 GLU N H sing N N 107 GLU N H2 sing N N 108 GLU CA C sing N N 109 GLU CA CB sing N N 110 GLU CA HA sing N N 111 GLU C O doub N N 112 GLU C OXT sing N N 113 GLU CB CG sing N N 114 GLU CB HB2 sing N N 115 GLU CB HB3 sing N N 116 GLU CG CD sing N N 117 GLU CG HG2 sing N N 118 GLU CG HG3 sing N N 119 GLU CD OE1 doub N N 120 GLU CD OE2 sing N N 121 GLU OE2 HE2 sing N N 122 GLU OXT HXT sing N N 123 GLY N CA sing N N 124 GLY N H sing N N 125 GLY N H2 sing N N 126 GLY CA C sing N N 127 GLY CA HA2 sing N N 128 GLY CA HA3 sing N N 129 GLY C O doub N N 130 GLY C OXT sing N N 131 GLY OXT HXT sing N N 132 HIS N CA sing N N 133 HIS N H sing N N 134 HIS N H2 sing N N 135 HIS CA C sing N N 136 HIS CA CB sing N N 137 HIS CA HA sing N N 138 HIS C O doub N N 139 HIS C OXT sing N N 140 HIS CB CG sing N N 141 HIS CB HB2 sing N N 142 HIS CB HB3 sing N N 143 HIS CG ND1 sing Y N 144 HIS CG CD2 doub Y N 145 HIS ND1 CE1 doub Y N 146 HIS ND1 HD1 sing N N 147 HIS CD2 NE2 sing Y N 148 HIS CD2 HD2 sing N N 149 HIS CE1 NE2 sing Y N 150 HIS CE1 HE1 sing N N 151 HIS NE2 HE2 sing N N 152 HIS OXT HXT sing N N 153 HOH O H1 sing N N 154 HOH O H2 sing N N 155 ILE N CA sing N N 156 ILE N H sing N N 157 ILE N H2 sing N N 158 ILE CA C sing N N 159 ILE CA CB sing N N 160 ILE CA HA sing N N 161 ILE C O doub N N 162 ILE C OXT sing N N 163 ILE CB CG1 sing N N 164 ILE CB CG2 sing N N 165 ILE CB HB sing N N 166 ILE CG1 CD1 sing N N 167 ILE CG1 HG12 sing N N 168 ILE CG1 HG13 sing N N 169 ILE CG2 HG21 sing N N 170 ILE CG2 HG22 sing N N 171 ILE CG2 HG23 sing N N 172 ILE CD1 HD11 sing N N 173 ILE CD1 HD12 sing N N 174 ILE CD1 HD13 sing N N 175 ILE OXT HXT sing N N 176 LEU N CA sing N N 177 LEU N H sing N N 178 LEU N H2 sing N N 179 LEU CA C sing N N 180 LEU CA CB sing N N 181 LEU CA HA sing N N 182 LEU C O doub N N 183 LEU C OXT sing N N 184 LEU CB CG sing N N 185 LEU CB HB2 sing N N 186 LEU CB HB3 sing N N 187 LEU CG CD1 sing N N 188 LEU CG CD2 sing N N 189 LEU CG HG sing N N 190 LEU CD1 HD11 sing N N 191 LEU CD1 HD12 sing N N 192 LEU CD1 HD13 sing N N 193 LEU CD2 HD21 sing N N 194 LEU CD2 HD22 sing N N 195 LEU CD2 HD23 sing N N 196 LEU OXT HXT sing N N 197 LYS N CA sing N N 198 LYS N H sing N N 199 LYS N H2 sing N N 200 LYS CA C sing N N 201 LYS CA CB sing N N 202 LYS CA HA sing N N 203 LYS C O doub N N 204 LYS C OXT sing N N 205 LYS CB CG sing N N 206 LYS CB HB2 sing N N 207 LYS CB HB3 sing N N 208 LYS CG CD sing N N 209 LYS CG HG2 sing N N 210 LYS CG HG3 sing N N 211 LYS CD CE sing N N 212 LYS CD HD2 sing N N 213 LYS CD HD3 sing N N 214 LYS CE NZ sing N N 215 LYS CE HE2 sing N N 216 LYS CE HE3 sing N N 217 LYS NZ HZ1 sing N N 218 LYS NZ HZ2 sing N N 219 LYS NZ HZ3 sing N N 220 LYS OXT HXT sing N N 221 MAN C1 C2 sing N N 222 MAN C1 O1 sing N N 223 MAN C1 O5 sing N N 224 MAN C1 H1 sing N N 225 MAN C2 C3 sing N N 226 MAN C2 O2 sing N N 227 MAN C2 H2 sing N N 228 MAN C3 C4 sing N N 229 MAN C3 O3 sing N N 230 MAN C3 H3 sing N N 231 MAN C4 C5 sing N N 232 MAN C4 O4 sing N N 233 MAN C4 H4 sing N N 234 MAN C5 C6 sing N N 235 MAN C5 O5 sing N N 236 MAN C5 H5 sing N N 237 MAN C6 O6 sing N N 238 MAN C6 H61 sing N N 239 MAN C6 H62 sing N N 240 MAN O1 HO1 sing N N 241 MAN O2 HO2 sing N N 242 MAN O3 HO3 sing N N 243 MAN O4 HO4 sing N N 244 MAN O6 HO6 sing N N 245 MET N CA sing N N 246 MET N H sing N N 247 MET N H2 sing N N 248 MET CA C sing N N 249 MET CA CB sing N N 250 MET CA HA sing N N 251 MET C O doub N N 252 MET C OXT sing N N 253 MET CB CG sing N N 254 MET CB HB2 sing N N 255 MET CB HB3 sing N N 256 MET CG SD sing N N 257 MET CG HG2 sing N N 258 MET CG HG3 sing N N 259 MET SD CE sing N N 260 MET CE HE1 sing N N 261 MET CE HE2 sing N N 262 MET CE HE3 sing N N 263 MET OXT HXT sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 SO4 S O1 doub N N 318 SO4 S O2 doub N N 319 SO4 S O3 sing N N 320 SO4 S O4 sing N N 321 THR N CA sing N N 322 THR N H sing N N 323 THR N H2 sing N N 324 THR CA C sing N N 325 THR CA CB sing N N 326 THR CA HA sing N N 327 THR C O doub N N 328 THR C OXT sing N N 329 THR CB OG1 sing N N 330 THR CB CG2 sing N N 331 THR CB HB sing N N 332 THR OG1 HG1 sing N N 333 THR CG2 HG21 sing N N 334 THR CG2 HG22 sing N N 335 THR CG2 HG23 sing N N 336 THR OXT HXT sing N N 337 TRP N CA sing N N 338 TRP N H sing N N 339 TRP N H2 sing N N 340 TRP CA C sing N N 341 TRP CA CB sing N N 342 TRP CA HA sing N N 343 TRP C O doub N N 344 TRP C OXT sing N N 345 TRP CB CG sing N N 346 TRP CB HB2 sing N N 347 TRP CB HB3 sing N N 348 TRP CG CD1 doub Y N 349 TRP CG CD2 sing Y N 350 TRP CD1 NE1 sing Y N 351 TRP CD1 HD1 sing N N 352 TRP CD2 CE2 doub Y N 353 TRP CD2 CE3 sing Y N 354 TRP NE1 CE2 sing Y N 355 TRP NE1 HE1 sing N N 356 TRP CE2 CZ2 sing Y N 357 TRP CE3 CZ3 doub Y N 358 TRP CE3 HE3 sing N N 359 TRP CZ2 CH2 doub Y N 360 TRP CZ2 HZ2 sing N N 361 TRP CZ3 CH2 sing Y N 362 TRP CZ3 HZ3 sing N N 363 TRP CH2 HH2 sing N N 364 TRP OXT HXT sing N N 365 TYR N CA sing N N 366 TYR N H sing N N 367 TYR N H2 sing N N 368 TYR CA C sing N N 369 TYR CA CB sing N N 370 TYR CA HA sing N N 371 TYR C O doub N N 372 TYR C OXT sing N N 373 TYR CB CG sing N N 374 TYR CB HB2 sing N N 375 TYR CB HB3 sing N N 376 TYR CG CD1 doub Y N 377 TYR CG CD2 sing Y N 378 TYR CD1 CE1 sing Y N 379 TYR CD1 HD1 sing N N 380 TYR CD2 CE2 doub Y N 381 TYR CD2 HD2 sing N N 382 TYR CE1 CZ doub Y N 383 TYR CE1 HE1 sing N N 384 TYR CE2 CZ sing Y N 385 TYR CE2 HE2 sing N N 386 TYR CZ OH sing N N 387 TYR OH HH sing N N 388 TYR OXT HXT sing N N 389 VAL N CA sing N N 390 VAL N H sing N N 391 VAL N H2 sing N N 392 VAL CA C sing N N 393 VAL CA CB sing N N 394 VAL CA HA sing N N 395 VAL C O doub N N 396 VAL C OXT sing N N 397 VAL CB CG1 sing N N 398 VAL CB CG2 sing N N 399 VAL CB HB sing N N 400 VAL CG1 HG11 sing N N 401 VAL CG1 HG12 sing N N 402 VAL CG1 HG13 sing N N 403 VAL CG2 HG21 sing N N 404 VAL CG2 HG22 sing N N 405 VAL CG2 HG23 sing N N 406 VAL OXT HXT sing N N 407 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 MAN 1 C MAN 1 A MAN 406 n C 2 MAN 2 C MAN 2 A MAN 407 n C 2 MAN 3 C MAN 3 A MAN 408 n C 2 MAN 4 C MAN 4 A MAN 405 n D 3 MAN 1 D MAN 1 B MAN 406 n D 3 MAN 2 D MAN 2 B MAN 405 n D 3 MAN 3 D MAN 3 B MAN 407 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DManpa1-3DManpa1-6[DManpa1-3]DManpa1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,4,3/[a1122h-1a_1-5]/1-1-1-1/a3-b1_a6-c1_c3-d1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{[(3+1)][a-D-Manp]{}}}' LINUCS PDB-CARE ? 4 3 'DManpa1-3[DManpa1-6]DManpa1-ROH' 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/1,3,2/[a1122h-1a_1-5]/1-1-1/a3-b1_a6-c1' WURCS PDB2Glycan 1.1.0 6 3 '[][a-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 MAN C1 O1 1 MAN O6 HO6 sing ? 2 2 3 MAN C1 O1 2 MAN O3 HO3 sing ? 3 2 4 MAN C1 O1 1 MAN O3 HO3 sing ? 4 3 2 MAN C1 O1 1 MAN O3 HO3 sing ? 5 3 3 MAN C1 O1 1 MAN O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 MAN 1 n 2 MAN 2 n 2 MAN 3 n 2 MAN 4 n 3 MAN 1 n 3 MAN 2 n 3 MAN 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SULFATE ION' SO4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1J4S _pdbx_initial_refinement_model.details ? #