HEADER OXIDOREDUCTASE 09-MAR-04 1VCK TITLE CRYSTAL STRUCTURE OF FERREDOXIN COMPONENT OF CARBAZOLE 1,9A- TITLE 2 DIOXYGENASE OF PSEUDOMONAS RESINOVORANS STRAIN CA10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN COMPONENT OF CARBAZOLE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RIESKE-TYPE FERREDOXIN OF CARBAZOLE 1,9A-DIOXYGENASE; COMPND 5 EC: 1.14.12.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS RESINOVORANS; SOURCE 3 ORGANISM_TAXID: 53412; SOURCE 4 STRAIN: CA10; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PECAC1 KEYWDS RIESKE-TYPE FERREDOXIN, CARBAZOLE 1, 9A-DIOXYGENASE, PSEUDOMONAS KEYWDS 2 RESINOVORANS STRAIN CA10, ANGULAR DIOXYGENASE, RIESKE NON-HEME IRON KEYWDS 3 OXYGENASE SYSTEM, CARAC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.-W.NAM,H.NOGUCHI,Z.FUJIOMOTO,H.MIZUNO,S.FUSHINOBU,N.KOBASHI, AUTHOR 2 K.IWATA,T.YOSHIDA,H.HABE,H.YAMANE,T.OMORI,H.NOJIRI REVDAT 3 27-DEC-23 1VCK 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1VCK 1 VERSN REVDAT 1 01-MAR-05 1VCK 0 JRNL AUTH J.-W.NAM,H.NOGUCHI,Z.FUJIOMOTO,H.MIZUNO,Y.ASHIKAWA,M.ABO, JRNL AUTH 2 S.FUSHINOBU,N.KOBASHI,T.WAKAGI,K.IWATA,T.YOSHIDA,H.HABE, JRNL AUTH 3 H.YAMANE,T.OMORI,H.NOJIRI JRNL TITL CRYSTAL STRUCTURE OF THE FERREDOXIN COMPONENT OF CARBAZOLE JRNL TITL 2 1,9A-DIOXYGENASE OF PSEUDOMONAS RESINOVORANS STRAIN CA10, A JRNL TITL 3 NOVEL RIESKE NON-HEME IRON OXYGENASE SYSTEM JRNL REF PROTEINS V. 58 779 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 15645447 JRNL DOI 10.1002/PROT.20374 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2305799.770 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1373 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1936 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 228 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 768 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.07 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.760 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.180 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.900 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.840 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.750 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 66.03 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VCK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000006464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13347 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17-19% PEG2000 MME, 0.2M AMMONIUM REMARK 280 SULFATE, 0.1M SODIUM ACETATE, 0.02M MAGNESIUM CHLORIDE, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.14050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.14050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.14050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.14050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.14050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.14050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 49.14050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 49.14050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 49.14050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 49.14050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 49.14050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 49.14050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 49.14050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 49.14050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 49.14050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 49.14050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 49.14050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 49.14050 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 73.71075 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 24.57025 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 24.57025 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 73.71075 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 73.71075 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 73.71075 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 24.57025 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 24.57025 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 73.71075 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 24.57025 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 73.71075 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 24.57025 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 73.71075 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 24.57025 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 24.57025 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 24.57025 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 73.71075 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 24.57025 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 73.71075 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 73.71075 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 73.71075 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 24.57025 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 24.57025 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 73.71075 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 73.71075 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 24.57025 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 24.57025 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 24.57025 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 24.57025 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 73.71075 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 24.57025 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 73.71075 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 24.57025 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 73.71075 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 73.71075 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 73.71075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 328 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 329 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 330 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 LEU A 108 REMARK 465 GLU A 109 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 HIS A 113 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 263 O HOH A 263 19555 2.08 REMARK 500 O HOH A 264 O HOH A 264 19555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 8 -64.27 -93.35 REMARK 500 CYS A 9 -178.18 -179.55 REMARK 500 HIS A 68 -4.76 54.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 FES A 201 S1 105.1 REMARK 620 3 FES A 201 S2 111.9 105.8 REMARK 620 4 CYS A 65 SG 110.1 114.1 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 201 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 48 ND1 REMARK 620 2 FES A 201 S1 108.1 REMARK 620 3 FES A 201 S2 118.5 106.5 REMARK 620 4 HIS A 68 ND1 94.3 119.8 109.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 211 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 55 OE1 REMARK 620 2 GLU A 55 OE2 87.5 REMARK 620 3 HOH A 260 O 81.9 78.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 212 DBREF 1VCK A 1 107 UNP Q8GI16 Q8GI16_PSERE 1 107 SEQADV 1VCK LEU A 108 UNP Q8GI16 EXPRESSION TAG SEQADV 1VCK GLU A 109 UNP Q8GI16 EXPRESSION TAG SEQADV 1VCK HIS A 110 UNP Q8GI16 EXPRESSION TAG SEQADV 1VCK HIS A 111 UNP Q8GI16 EXPRESSION TAG SEQADV 1VCK HIS A 112 UNP Q8GI16 EXPRESSION TAG SEQADV 1VCK HIS A 113 UNP Q8GI16 EXPRESSION TAG SEQADV 1VCK HIS A 114 UNP Q8GI16 EXPRESSION TAG SEQADV 1VCK HIS A 115 UNP Q8GI16 EXPRESSION TAG SEQRES 1 A 115 MET ASN GLN ILE TRP LEU LYS VAL CYS ALA ALA SER ASP SEQRES 2 A 115 MET GLN PRO GLY THR ILE ARG ARG VAL ASN ARG VAL GLY SEQRES 3 A 115 ALA ALA PRO LEU ALA VAL TYR ARG VAL GLY ASP GLN PHE SEQRES 4 A 115 TYR ALA THR GLU ASP THR CYS THR HIS GLY ILE ALA SER SEQRES 5 A 115 LEU SER GLU GLY THR LEU ASP GLY ASP VAL ILE GLU CYS SEQRES 6 A 115 PRO PHE HIS GLY GLY ALA PHE ASN VAL CYS THR GLY MET SEQRES 7 A 115 PRO ALA SER SER PRO CYS THR VAL PRO LEU GLY VAL PHE SEQRES 8 A 115 GLU VAL GLU VAL LYS GLU GLY GLU VAL TYR VAL ALA GLY SEQRES 9 A 115 GLU LYS LYS LEU GLU HIS HIS HIS HIS HIS HIS HET FE A 211 1 HET FES A 201 4 HET H2S A 212 1 HETNAM FE FE (III) ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM H2S HYDROSULFURIC ACID HETSYN H2S HYDROGEN SULFIDE FORMUL 2 FE FE 3+ FORMUL 3 FES FE2 S2 FORMUL 4 H2S H2 S FORMUL 5 HOH *139(H2 O) HELIX 1 1 SER A 12 MET A 14 5 3 HELIX 2 2 SER A 52 GLY A 56 5 5 SHEET 1 A 3 TRP A 5 ALA A 10 0 SHEET 2 A 3 GLU A 99 ALA A 103 -1 O VAL A 100 N CYS A 9 SHEET 3 A 3 VAL A 93 LYS A 96 -1 N GLU A 94 O TYR A 101 SHEET 1 B 3 ILE A 19 ARG A 24 0 SHEET 2 B 3 ALA A 27 VAL A 35 -1 O LEU A 30 N VAL A 22 SHEET 3 B 3 GLN A 38 GLU A 43 -1 O TYR A 40 N TYR A 33 SHEET 1 C 4 THR A 57 ASP A 59 0 SHEET 2 C 4 VAL A 62 GLU A 64 -1 O GLU A 64 N THR A 57 SHEET 3 C 4 ALA A 71 ASN A 73 -1 O PHE A 72 N ILE A 63 SHEET 4 C 4 PRO A 79 SER A 81 -1 O ALA A 80 N ALA A 71 LINK SG CYS A 46 FE1 FES A 201 1555 1555 2.33 LINK ND1 HIS A 48 FE2 FES A 201 1555 1555 2.12 LINK OE1 GLU A 55 FE FE A 211 1555 1555 2.02 LINK OE2 GLU A 55 FE FE A 211 9555 1555 1.98 LINK SG CYS A 65 FE1 FES A 201 1555 1555 2.25 LINK ND1 HIS A 68 FE2 FES A 201 1555 1555 2.16 LINK FE FE A 211 O HOH A 260 1555 9555 2.19 CISPEP 1 SER A 82 PRO A 83 0 0.20 SITE 1 AC1 3 GLU A 55 H2S A 212 HOH A 260 SITE 1 AC2 8 CYS A 46 HIS A 48 GLY A 49 CYS A 65 SITE 2 AC2 8 PHE A 67 HIS A 68 GLY A 70 CYS A 84 SITE 1 AC3 4 GLU A 55 FE A 211 HOH A 329 HOH A 348 CRYST1 98.281 98.281 98.281 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010175 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010175 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010175 0.00000