data_1VCZ # _entry.id 1VCZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VCZ pdb_00001vcz 10.2210/pdb1vcz/pdb RCSB RCSB006477 ? ? WWPDB D_1000006477 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-26 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 5 'Structure model' 1 4 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site 7 5 'Structure model' pdbx_entry_details 8 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VCZ _pdbx_database_status.recvd_initial_deposition_date 2004-03-17 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kawano, S.' 1 'Kakuta, Y.' 2 'Kimura, M.' 3 # _citation.id primary _citation.title 'Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kawano, S.' 1 ? primary 'Kakuta, Y.' 2 ? primary 'Kimura, M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNase NGR3' 24998.504 1 3.1.27.1 ? ? ? 2 non-polymer syn "GUANOSINE-5'-MONOPHOSPHATE" 363.221 2 ? ? ? ? 3 water nat water 18.015 92 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Ribonuclease NT, RNase NT' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;YVEFAQDFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYENGKWPQNCDRESSLDESEISDLISTMEKNW PSLACPSSDGVRFWSHEWLKHGTCSALGERAYFQAALDFRKKSNLLENLKNAEITPRNGEHYTLESIKKAIEEGVGHSPY IECNVDTQGNHQIYQVYLCVDKTATDFIDCPIFPHGRGCGSKIEFPPFSSESDHDEF ; _entity_poly.pdbx_seq_one_letter_code_can ;YVEFAQDFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYENGKWPQNCDRESSLDESEISDLISTMEKNW PSLACPSSDGVRFWSHEWLKHGTCSALGERAYFQAALDFRKKSNLLENLKNAEITPRNGEHYTLESIKKAIEEGVGHSPY IECNVDTQGNHQIYQVYLCVDKTATDFIDCPIFPHGRGCGSKIEFPPFSSESDHDEF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-MONOPHOSPHATE" 5GP 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 VAL n 1 3 GLU n 1 4 PHE n 1 5 ALA n 1 6 GLN n 1 7 ASP n 1 8 PHE n 1 9 ASP n 1 10 PHE n 1 11 PHE n 1 12 TYR n 1 13 PHE n 1 14 VAL n 1 15 GLN n 1 16 GLN n 1 17 TRP n 1 18 PRO n 1 19 ALA n 1 20 SER n 1 21 TYR n 1 22 CYS n 1 23 ASP n 1 24 THR n 1 25 ARG n 1 26 ARG n 1 27 SER n 1 28 CYS n 1 29 CYS n 1 30 TYR n 1 31 PRO n 1 32 THR n 1 33 THR n 1 34 GLY n 1 35 LYS n 1 36 PRO n 1 37 ASP n 1 38 GLU n 1 39 ASP n 1 40 PHE n 1 41 SER n 1 42 ILE n 1 43 HIS n 1 44 GLY n 1 45 LEU n 1 46 TRP n 1 47 PRO n 1 48 ASN n 1 49 TYR n 1 50 GLU n 1 51 ASN n 1 52 GLY n 1 53 LYS n 1 54 TRP n 1 55 PRO n 1 56 GLN n 1 57 ASN n 1 58 CYS n 1 59 ASP n 1 60 ARG n 1 61 GLU n 1 62 SER n 1 63 SER n 1 64 LEU n 1 65 ASP n 1 66 GLU n 1 67 SER n 1 68 GLU n 1 69 ILE n 1 70 SER n 1 71 ASP n 1 72 LEU n 1 73 ILE n 1 74 SER n 1 75 THR n 1 76 MET n 1 77 GLU n 1 78 LYS n 1 79 ASN n 1 80 TRP n 1 81 PRO n 1 82 SER n 1 83 LEU n 1 84 ALA n 1 85 CYS n 1 86 PRO n 1 87 SER n 1 88 SER n 1 89 ASP n 1 90 GLY n 1 91 VAL n 1 92 ARG n 1 93 PHE n 1 94 TRP n 1 95 SER n 1 96 HIS n 1 97 GLU n 1 98 TRP n 1 99 LEU n 1 100 LYS n 1 101 HIS n 1 102 GLY n 1 103 THR n 1 104 CYS n 1 105 SER n 1 106 ALA n 1 107 LEU n 1 108 GLY n 1 109 GLU n 1 110 ARG n 1 111 ALA n 1 112 TYR n 1 113 PHE n 1 114 GLN n 1 115 ALA n 1 116 ALA n 1 117 LEU n 1 118 ASP n 1 119 PHE n 1 120 ARG n 1 121 LYS n 1 122 LYS n 1 123 SER n 1 124 ASN n 1 125 LEU n 1 126 LEU n 1 127 GLU n 1 128 ASN n 1 129 LEU n 1 130 LYS n 1 131 ASN n 1 132 ALA n 1 133 GLU n 1 134 ILE n 1 135 THR n 1 136 PRO n 1 137 ARG n 1 138 ASN n 1 139 GLY n 1 140 GLU n 1 141 HIS n 1 142 TYR n 1 143 THR n 1 144 LEU n 1 145 GLU n 1 146 SER n 1 147 ILE n 1 148 LYS n 1 149 LYS n 1 150 ALA n 1 151 ILE n 1 152 GLU n 1 153 GLU n 1 154 GLY n 1 155 VAL n 1 156 GLY n 1 157 HIS n 1 158 SER n 1 159 PRO n 1 160 TYR n 1 161 ILE n 1 162 GLU n 1 163 CYS n 1 164 ASN n 1 165 VAL n 1 166 ASP n 1 167 THR n 1 168 GLN n 1 169 GLY n 1 170 ASN n 1 171 HIS n 1 172 GLN n 1 173 ILE n 1 174 TYR n 1 175 GLN n 1 176 VAL n 1 177 TYR n 1 178 LEU n 1 179 CYS n 1 180 VAL n 1 181 ASP n 1 182 LYS n 1 183 THR n 1 184 ALA n 1 185 THR n 1 186 ASP n 1 187 PHE n 1 188 ILE n 1 189 ASP n 1 190 CYS n 1 191 PRO n 1 192 ILE n 1 193 PHE n 1 194 PRO n 1 195 HIS n 1 196 GLY n 1 197 ARG n 1 198 GLY n 1 199 CYS n 1 200 GLY n 1 201 SER n 1 202 LYS n 1 203 ILE n 1 204 GLU n 1 205 PHE n 1 206 PRO n 1 207 PRO n 1 208 PHE n 1 209 SER n 1 210 SER n 1 211 GLU n 1 212 SER n 1 213 ASP n 1 214 HIS n 1 215 ASP n 1 216 GLU n 1 217 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Nicotiana _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue leaves _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Nicotiana glutinosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 35889 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus Pichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain GS115 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPIC9K _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5GP non-polymer . "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 -3 ? ? ? A . n A 1 2 VAL 2 -2 ? ? ? A . n A 1 3 GLU 3 -1 ? ? ? A . n A 1 4 PHE 4 0 ? ? ? A . n A 1 5 ALA 5 1 1 ALA ALA A . n A 1 6 GLN 6 2 2 GLN GLN A . n A 1 7 ASP 7 3 3 ASP ASP A . n A 1 8 PHE 8 4 4 PHE PHE A . n A 1 9 ASP 9 5 5 ASP ASP A . n A 1 10 PHE 10 6 6 PHE PHE A . n A 1 11 PHE 11 7 7 PHE PHE A . n A 1 12 TYR 12 8 8 TYR TYR A . n A 1 13 PHE 13 9 9 PHE PHE A . n A 1 14 VAL 14 10 10 VAL VAL A . n A 1 15 GLN 15 11 11 GLN GLN A . n A 1 16 GLN 16 12 12 GLN GLN A . n A 1 17 TRP 17 13 13 TRP TRP A . n A 1 18 PRO 18 14 14 PRO PRO A . n A 1 19 ALA 19 15 15 ALA ALA A . n A 1 20 SER 20 16 16 SER SER A . n A 1 21 TYR 21 17 17 TYR TYR A . n A 1 22 CYS 22 18 18 CYS CYS A . n A 1 23 ASP 23 19 19 ASP ASP A . n A 1 24 THR 24 20 20 THR THR A . n A 1 25 ARG 25 21 21 ARG ARG A . n A 1 26 ARG 26 22 22 ARG ARG A . n A 1 27 SER 27 23 23 SER SER A . n A 1 28 CYS 28 24 24 CYS CYS A . n A 1 29 CYS 29 25 25 CYS CYS A . n A 1 30 TYR 30 26 26 TYR TYR A . n A 1 31 PRO 31 27 27 PRO PRO A . n A 1 32 THR 32 28 28 THR THR A . n A 1 33 THR 33 29 29 THR THR A . n A 1 34 GLY 34 30 30 GLY GLY A . n A 1 35 LYS 35 31 31 LYS LYS A . n A 1 36 PRO 36 32 32 PRO PRO A . n A 1 37 ASP 37 33 33 ASP ASP A . n A 1 38 GLU 38 34 34 GLU GLU A . n A 1 39 ASP 39 35 35 ASP ASP A . n A 1 40 PHE 40 36 36 PHE PHE A . n A 1 41 SER 41 37 37 SER SER A . n A 1 42 ILE 42 38 38 ILE ILE A . n A 1 43 HIS 43 39 39 HIS HIS A . n A 1 44 GLY 44 40 40 GLY GLY A . n A 1 45 LEU 45 41 41 LEU LEU A . n A 1 46 TRP 46 42 42 TRP TRP A . n A 1 47 PRO 47 43 43 PRO PRO A . n A 1 48 ASN 48 44 44 ASN ASN A . n A 1 49 TYR 49 45 45 TYR TYR A . n A 1 50 GLU 50 46 46 GLU GLU A . n A 1 51 ASN 51 47 47 ASN ASN A . n A 1 52 GLY 52 48 48 GLY GLY A . n A 1 53 LYS 53 49 49 LYS LYS A . n A 1 54 TRP 54 50 50 TRP TRP A . n A 1 55 PRO 55 51 51 PRO PRO A . n A 1 56 GLN 56 52 52 GLN GLN A . n A 1 57 ASN 57 53 53 ASN ASN A . n A 1 58 CYS 58 54 54 CYS CYS A . n A 1 59 ASP 59 55 55 ASP ASP A . n A 1 60 ARG 60 56 56 ARG ARG A . n A 1 61 GLU 61 57 57 GLU GLU A . n A 1 62 SER 62 58 58 SER SER A . n A 1 63 SER 63 59 59 SER SER A . n A 1 64 LEU 64 60 60 LEU LEU A . n A 1 65 ASP 65 61 61 ASP ASP A . n A 1 66 GLU 66 62 62 GLU GLU A . n A 1 67 SER 67 63 63 SER SER A . n A 1 68 GLU 68 64 64 GLU GLU A . n A 1 69 ILE 69 65 65 ILE ILE A . n A 1 70 SER 70 66 66 SER SER A . n A 1 71 ASP 71 67 67 ASP ASP A . n A 1 72 LEU 72 68 68 LEU LEU A . n A 1 73 ILE 73 69 69 ILE ILE A . n A 1 74 SER 74 70 70 SER SER A . n A 1 75 THR 75 71 71 THR THR A . n A 1 76 MET 76 72 72 MET MET A . n A 1 77 GLU 77 73 73 GLU GLU A . n A 1 78 LYS 78 74 74 LYS LYS A . n A 1 79 ASN 79 75 75 ASN ASN A . n A 1 80 TRP 80 76 76 TRP TRP A . n A 1 81 PRO 81 77 77 PRO PRO A . n A 1 82 SER 82 78 78 SER SER A . n A 1 83 LEU 83 79 79 LEU LEU A . n A 1 84 ALA 84 80 80 ALA ALA A . n A 1 85 CYS 85 81 81 CYS CYS A . n A 1 86 PRO 86 82 82 PRO PRO A . n A 1 87 SER 87 83 83 SER SER A . n A 1 88 SER 88 84 84 SER SER A . n A 1 89 ASP 89 85 85 ASP ASP A . n A 1 90 GLY 90 86 86 GLY GLY A . n A 1 91 VAL 91 87 87 VAL VAL A . n A 1 92 ARG 92 88 88 ARG ARG A . n A 1 93 PHE 93 89 89 PHE PHE A . n A 1 94 TRP 94 90 90 TRP TRP A . n A 1 95 SER 95 91 91 SER SER A . n A 1 96 HIS 96 92 92 HIS HIS A . n A 1 97 GLU 97 93 93 GLU GLU A . n A 1 98 TRP 98 94 94 TRP TRP A . n A 1 99 LEU 99 95 95 LEU LEU A . n A 1 100 LYS 100 96 96 LYS LYS A . n A 1 101 HIS 101 97 97 HIS HIS A . n A 1 102 GLY 102 98 98 GLY GLY A . n A 1 103 THR 103 99 99 THR THR A . n A 1 104 CYS 104 100 100 CYS CYS A . n A 1 105 SER 105 101 101 SER SER A . n A 1 106 ALA 106 102 102 ALA ALA A . n A 1 107 LEU 107 103 103 LEU LEU A . n A 1 108 GLY 108 104 104 GLY GLY A . n A 1 109 GLU 109 105 105 GLU GLU A . n A 1 110 ARG 110 106 106 ARG ARG A . n A 1 111 ALA 111 107 107 ALA ALA A . n A 1 112 TYR 112 108 108 TYR TYR A . n A 1 113 PHE 113 109 109 PHE PHE A . n A 1 114 GLN 114 110 110 GLN GLN A . n A 1 115 ALA 115 111 111 ALA ALA A . n A 1 116 ALA 116 112 112 ALA ALA A . n A 1 117 LEU 117 113 113 LEU LEU A . n A 1 118 ASP 118 114 114 ASP ASP A . n A 1 119 PHE 119 115 115 PHE PHE A . n A 1 120 ARG 120 116 116 ARG ARG A . n A 1 121 LYS 121 117 117 LYS LYS A . n A 1 122 LYS 122 118 118 LYS LYS A . n A 1 123 SER 123 119 119 SER SER A . n A 1 124 ASN 124 120 120 ASN ASN A . n A 1 125 LEU 125 121 121 LEU LEU A . n A 1 126 LEU 126 122 122 LEU LEU A . n A 1 127 GLU 127 123 123 GLU GLU A . n A 1 128 ASN 128 124 124 ASN ASN A . n A 1 129 LEU 129 125 125 LEU LEU A . n A 1 130 LYS 130 126 126 LYS LYS A . n A 1 131 ASN 131 127 127 ASN ASN A . n A 1 132 ALA 132 128 128 ALA ALA A . n A 1 133 GLU 133 129 129 GLU GLU A . n A 1 134 ILE 134 130 130 ILE ILE A . n A 1 135 THR 135 131 131 THR THR A . n A 1 136 PRO 136 132 132 PRO PRO A . n A 1 137 ARG 137 133 133 ARG ARG A . n A 1 138 ASN 138 134 134 ASN ASN A . n A 1 139 GLY 139 135 135 GLY GLY A . n A 1 140 GLU 140 136 136 GLU GLU A . n A 1 141 HIS 141 137 137 HIS HIS A . n A 1 142 TYR 142 138 138 TYR TYR A . n A 1 143 THR 143 139 139 THR THR A . n A 1 144 LEU 144 140 140 LEU LEU A . n A 1 145 GLU 145 141 141 GLU GLU A . n A 1 146 SER 146 142 142 SER SER A . n A 1 147 ILE 147 143 143 ILE ILE A . n A 1 148 LYS 148 144 144 LYS LYS A . n A 1 149 LYS 149 145 145 LYS LYS A . n A 1 150 ALA 150 146 146 ALA ALA A . n A 1 151 ILE 151 147 147 ILE ILE A . n A 1 152 GLU 152 148 148 GLU GLU A . n A 1 153 GLU 153 149 149 GLU GLU A . n A 1 154 GLY 154 150 150 GLY GLY A . n A 1 155 VAL 155 151 151 VAL VAL A . n A 1 156 GLY 156 152 152 GLY GLY A . n A 1 157 HIS 157 153 153 HIS HIS A . n A 1 158 SER 158 154 154 SER SER A . n A 1 159 PRO 159 155 155 PRO PRO A . n A 1 160 TYR 160 156 156 TYR TYR A . n A 1 161 ILE 161 157 157 ILE ILE A . n A 1 162 GLU 162 158 158 GLU GLU A . n A 1 163 CYS 163 159 159 CYS CYS A . n A 1 164 ASN 164 160 160 ASN ASN A . n A 1 165 VAL 165 161 161 VAL VAL A . n A 1 166 ASP 166 162 162 ASP ASP A . n A 1 167 THR 167 163 163 THR THR A . n A 1 168 GLN 168 164 164 GLN GLN A . n A 1 169 GLY 169 165 165 GLY GLY A . n A 1 170 ASN 170 166 166 ASN ASN A . n A 1 171 HIS 171 167 167 HIS HIS A . n A 1 172 GLN 172 168 168 GLN GLN A . n A 1 173 ILE 173 169 169 ILE ILE A . n A 1 174 TYR 174 170 170 TYR TYR A . n A 1 175 GLN 175 171 171 GLN GLN A . n A 1 176 VAL 176 172 172 VAL VAL A . n A 1 177 TYR 177 173 173 TYR TYR A . n A 1 178 LEU 178 174 174 LEU LEU A . n A 1 179 CYS 179 175 175 CYS CYS A . n A 1 180 VAL 180 176 176 VAL VAL A . n A 1 181 ASP 181 177 177 ASP ASP A . n A 1 182 LYS 182 178 178 LYS LYS A . n A 1 183 THR 183 179 179 THR THR A . n A 1 184 ALA 184 180 180 ALA ALA A . n A 1 185 THR 185 181 181 THR THR A . n A 1 186 ASP 186 182 182 ASP ASP A . n A 1 187 PHE 187 183 183 PHE PHE A . n A 1 188 ILE 188 184 184 ILE ILE A . n A 1 189 ASP 189 185 185 ASP ASP A . n A 1 190 CYS 190 186 186 CYS CYS A . n A 1 191 PRO 191 187 187 PRO PRO A . n A 1 192 ILE 192 188 188 ILE ILE A . n A 1 193 PHE 193 189 189 PHE PHE A . n A 1 194 PRO 194 190 190 PRO PRO A . n A 1 195 HIS 195 191 191 HIS HIS A . n A 1 196 GLY 196 192 192 GLY GLY A . n A 1 197 ARG 197 193 193 ARG ARG A . n A 1 198 GLY 198 194 194 GLY GLY A . n A 1 199 CYS 199 195 195 CYS CYS A . n A 1 200 GLY 200 196 196 GLY GLY A . n A 1 201 SER 201 197 197 SER SER A . n A 1 202 LYS 202 198 198 LYS LYS A . n A 1 203 ILE 203 199 199 ILE ILE A . n A 1 204 GLU 204 200 200 GLU GLU A . n A 1 205 PHE 205 201 201 PHE PHE A . n A 1 206 PRO 206 202 202 PRO PRO A . n A 1 207 PRO 207 203 203 PRO PRO A . n A 1 208 PHE 208 204 204 PHE PHE A . n A 1 209 SER 209 205 ? ? ? A . n A 1 210 SER 210 206 ? ? ? A . n A 1 211 GLU 211 207 ? ? ? A . n A 1 212 SER 212 208 ? ? ? A . n A 1 213 ASP 213 209 ? ? ? A . n A 1 214 HIS 214 210 ? ? ? A . n A 1 215 ASP 215 211 ? ? ? A . n A 1 216 GLU 216 212 ? ? ? A . n A 1 217 PHE 217 213 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP 1 295 295 5GP 5GP A . C 2 5GP 1 296 296 5GP 5GP A . D 3 HOH 1 297 1 HOH TIP A . D 3 HOH 2 298 2 HOH TIP A . D 3 HOH 3 299 3 HOH TIP A . D 3 HOH 4 300 4 HOH TIP A . D 3 HOH 5 301 5 HOH TIP A . D 3 HOH 6 302 6 HOH TIP A . D 3 HOH 7 303 7 HOH TIP A . D 3 HOH 8 304 10 HOH TIP A . D 3 HOH 9 305 11 HOH TIP A . D 3 HOH 10 306 13 HOH TIP A . D 3 HOH 11 307 14 HOH TIP A . D 3 HOH 12 308 15 HOH TIP A . D 3 HOH 13 309 16 HOH TIP A . D 3 HOH 14 310 17 HOH TIP A . D 3 HOH 15 311 18 HOH TIP A . D 3 HOH 16 312 19 HOH TIP A . D 3 HOH 17 313 20 HOH TIP A . D 3 HOH 18 314 22 HOH TIP A . D 3 HOH 19 315 23 HOH TIP A . D 3 HOH 20 316 24 HOH TIP A . D 3 HOH 21 317 25 HOH TIP A . D 3 HOH 22 318 26 HOH TIP A . D 3 HOH 23 319 27 HOH TIP A . D 3 HOH 24 320 29 HOH TIP A . D 3 HOH 25 321 30 HOH TIP A . D 3 HOH 26 322 31 HOH TIP A . D 3 HOH 27 323 32 HOH TIP A . D 3 HOH 28 324 33 HOH TIP A . D 3 HOH 29 325 34 HOH TIP A . D 3 HOH 30 326 35 HOH TIP A . D 3 HOH 31 327 36 HOH TIP A . D 3 HOH 32 328 37 HOH TIP A . D 3 HOH 33 329 38 HOH TIP A . D 3 HOH 34 330 39 HOH TIP A . D 3 HOH 35 331 40 HOH TIP A . D 3 HOH 36 332 41 HOH TIP A . D 3 HOH 37 333 42 HOH TIP A . D 3 HOH 38 334 43 HOH TIP A . D 3 HOH 39 335 44 HOH TIP A . D 3 HOH 40 336 45 HOH TIP A . D 3 HOH 41 337 46 HOH TIP A . D 3 HOH 42 338 47 HOH TIP A . D 3 HOH 43 339 48 HOH TIP A . D 3 HOH 44 340 49 HOH TIP A . D 3 HOH 45 341 50 HOH TIP A . D 3 HOH 46 342 51 HOH TIP A . D 3 HOH 47 343 52 HOH TIP A . D 3 HOH 48 344 53 HOH TIP A . D 3 HOH 49 345 54 HOH TIP A . D 3 HOH 50 346 55 HOH TIP A . D 3 HOH 51 347 56 HOH TIP A . D 3 HOH 52 348 57 HOH TIP A . D 3 HOH 53 349 58 HOH TIP A . D 3 HOH 54 350 59 HOH TIP A . D 3 HOH 55 351 61 HOH TIP A . D 3 HOH 56 352 62 HOH TIP A . D 3 HOH 57 353 63 HOH TIP A . D 3 HOH 58 354 64 HOH TIP A . D 3 HOH 59 355 65 HOH TIP A . D 3 HOH 60 356 66 HOH TIP A . D 3 HOH 61 357 68 HOH TIP A . D 3 HOH 62 358 69 HOH TIP A . D 3 HOH 63 359 70 HOH TIP A . D 3 HOH 64 360 71 HOH TIP A . D 3 HOH 65 361 72 HOH TIP A . D 3 HOH 66 362 73 HOH TIP A . D 3 HOH 67 363 74 HOH TIP A . D 3 HOH 68 364 75 HOH TIP A . D 3 HOH 69 365 76 HOH TIP A . D 3 HOH 70 366 77 HOH TIP A . D 3 HOH 71 367 78 HOH TIP A . D 3 HOH 72 368 79 HOH TIP A . D 3 HOH 73 369 80 HOH TIP A . D 3 HOH 74 370 81 HOH TIP A . D 3 HOH 75 371 83 HOH TIP A . D 3 HOH 76 372 84 HOH TIP A . D 3 HOH 77 373 85 HOH TIP A . D 3 HOH 78 374 86 HOH TIP A . D 3 HOH 79 375 87 HOH TIP A . D 3 HOH 80 376 88 HOH TIP A . D 3 HOH 81 377 89 HOH TIP A . D 3 HOH 82 378 90 HOH TIP A . D 3 HOH 83 379 91 HOH TIP A . D 3 HOH 84 380 92 HOH TIP A . D 3 HOH 85 381 93 HOH TIP A . D 3 HOH 86 382 94 HOH TIP A . D 3 HOH 87 383 95 HOH TIP A . D 3 HOH 88 384 96 HOH TIP A . D 3 HOH 89 385 98 HOH TIP A . D 3 HOH 90 386 99 HOH TIP A . D 3 HOH 91 387 100 HOH TIP A . D 3 HOH 92 388 101 HOH TIP A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 1VCZ _cell.length_a 37.280 _cell.length_b 69.547 _cell.length_c 73.969 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VCZ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1VCZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.92 _exptl_crystal.density_percent_sol 35.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '20%(v/v) 1,4-butanediol, 0.1M Acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL40B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL40B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9 # _reflns.entry_id 1VCZ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.72 _reflns.d_resolution_high 1.8 _reflns.number_obs 18278 _reflns.number_all 18278 _reflns.percent_possible_obs 98.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.174 _reflns.pdbx_netI_over_sigmaI 26.0 _reflns.B_iso_Wilson_estimate 16.4 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs 0.251 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.7 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1VCZ _refine.ls_number_reflns_obs 18069 _refine.ls_number_reflns_all 18069 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 405119.61 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.72 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 97.9 _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.252 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 880 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 28.4 _refine.aniso_B[1][1] 5.13 _refine.aniso_B[2][2] -2.49 _refine.aniso_B[3][3] -2.64 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.377561 _refine.solvent_model_param_bsol 44.9483 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1IYB' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1VCZ _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.12 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.27 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1648 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 1788 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 19.72 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.9 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.07 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.97 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.92 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 4.36 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 5.81 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 2715 _refine_ls_shell.R_factor_R_work 0.242 _refine_ls_shell.percent_reflns_obs 95.6 _refine_ls_shell.R_factor_R_free 0.31 _refine_ls_shell.R_factor_R_free_error 0.026 _refine_ls_shell.percent_reflns_R_free 5.1 _refine_ls_shell.number_reflns_R_free 146 _refine_ls_shell.number_reflns_obs 1779 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER_REP.TOP 'X-RAY DIFFRACTION' 3 5GMP_XPLOR.PARAM 5GMP_XPLOR.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1VCZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VCZ _struct.title ;Crystal structure of the RNase NT in complex with 5'-GMP ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VCZ _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'hydrolase, ribonuclease' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9SSV1_NICGU _struct_ref.pdbx_db_accession Q9SSV1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AQDFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYENGKWPQNCDRESSLDESEISDLISTMEKNWPSLA CPSSDGVRFWSHEWLKHGTCSALGERAYFQAALDFRKKSNLLENLKNAEITPRNGEHYTLESIKKAIEEGVGHSPYIECN VDTQGNHQIYQVYLCVDKTATDFIDCPIFPHGRGCGSKIEFPPFSSESDHDEF ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VCZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 217 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9SSV1 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 236 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 213 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VCZ TYR A 1 ? UNP Q9SSV1 ? ? 'cloning artifact' -3 1 1 1VCZ VAL A 2 ? UNP Q9SSV1 ? ? 'cloning artifact' -2 2 1 1VCZ GLU A 3 ? UNP Q9SSV1 ? ? 'cloning artifact' -1 3 1 1VCZ PHE A 4 ? UNP Q9SSV1 ? ? 'cloning artifact' 0 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TRP A 17 ? CYS A 22 ? TRP A 13 CYS A 18 1 ? 6 HELX_P HELX_P2 2 ASP A 65 ? ASP A 71 ? ASP A 61 ASP A 67 5 ? 7 HELX_P HELX_P3 3 LEU A 72 ? TRP A 80 ? LEU A 68 TRP A 76 1 ? 9 HELX_P HELX_P4 4 GLY A 90 ? HIS A 101 ? GLY A 86 HIS A 97 1 ? 12 HELX_P HELX_P5 5 GLY A 102 ? SER A 105 ? GLY A 98 SER A 101 5 ? 4 HELX_P HELX_P6 6 GLY A 108 ? ASN A 124 ? GLY A 104 ASN A 120 1 ? 17 HELX_P HELX_P7 7 ASN A 124 ? ALA A 132 ? ASN A 120 ALA A 128 1 ? 9 HELX_P HELX_P8 8 LEU A 144 ? GLY A 156 ? LEU A 140 GLY A 152 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 28 SG ? ? A CYS 18 A CYS 24 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf2 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 85 SG ? ? A CYS 25 A CYS 81 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? A CYS 58 SG ? ? ? 1_555 A CYS 104 SG ? ? A CYS 54 A CYS 100 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf4 disulf ? ? A CYS 163 SG ? ? ? 1_555 A CYS 199 SG ? ? A CYS 159 A CYS 195 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf5 disulf ? ? A CYS 179 SG ? ? ? 1_555 A CYS 190 SG ? ? A CYS 175 A CYS 186 1_555 ? ? ? ? ? ? ? 2.021 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 22 ? CYS A 28 ? CYS A 18 ? 1_555 CYS A 24 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 29 ? CYS A 85 ? CYS A 25 ? 1_555 CYS A 81 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 58 ? CYS A 104 ? CYS A 54 ? 1_555 CYS A 100 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 163 ? CYS A 199 ? CYS A 159 ? 1_555 CYS A 195 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 179 ? CYS A 190 ? CYS A 175 ? 1_555 CYS A 186 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id CYS _struct_mon_prot_cis.label_seq_id 85 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id CYS _struct_mon_prot_cis.auth_seq_id 81 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 86 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 82 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 41 ? ASN A 48 ? SER A 37 ASN A 44 A 2 PHE A 10 ? GLN A 16 ? PHE A 6 GLN A 12 A 3 HIS A 171 ? ASP A 181 ? HIS A 167 ASP A 177 A 4 TYR A 160 ? VAL A 165 ? TYR A 156 VAL A 161 B 1 SER A 41 ? ASN A 48 ? SER A 37 ASN A 44 B 2 PHE A 10 ? GLN A 16 ? PHE A 6 GLN A 12 B 3 HIS A 171 ? ASP A 181 ? HIS A 167 ASP A 177 B 4 PHE A 187 ? ILE A 188 ? PHE A 183 ILE A 184 C 1 ARG A 137 ? THR A 143 ? ARG A 133 THR A 139 C 2 LYS A 202 ? PHE A 205 ? LYS A 198 PHE A 201 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TRP A 46 ? O TRP A 42 N TYR A 12 ? N TYR A 8 A 2 3 N PHE A 13 ? N PHE A 9 O LEU A 178 ? O LEU A 174 A 3 4 O TYR A 177 ? O TYR A 173 N TYR A 160 ? N TYR A 156 B 1 2 O TRP A 46 ? O TRP A 42 N TYR A 12 ? N TYR A 8 B 2 3 N PHE A 13 ? N PHE A 9 O LEU A 178 ? O LEU A 174 B 3 4 N CYS A 179 ? N CYS A 175 O ILE A 188 ? O ILE A 184 C 1 2 N TYR A 142 ? N TYR A 138 O ILE A 203 ? O ILE A 199 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 5GP 295 ? 10 'BINDING SITE FOR RESIDUE 5GP A 295' AC2 Software A 5GP 296 ? 18 'BINDING SITE FOR RESIDUE 5GP A 296' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 TYR A 12 ? TYR A 8 . ? 1_555 ? 2 AC1 10 TRP A 46 ? TRP A 42 . ? 1_555 ? 3 AC1 10 PRO A 47 ? PRO A 43 . ? 1_555 ? 4 AC1 10 ASN A 48 ? ASN A 44 . ? 1_555 ? 5 AC1 10 TRP A 54 ? TRP A 50 . ? 1_555 ? 6 AC1 10 LYS A 100 ? LYS A 96 . ? 1_555 ? 7 AC1 10 HIS A 101 ? HIS A 97 . ? 1_555 ? 8 AC1 10 5GP C . ? 5GP A 296 . ? 1_555 ? 9 AC1 10 HOH D . ? HOH A 317 . ? 1_555 ? 10 AC1 10 HOH D . ? HOH A 382 . ? 1_555 ? 11 AC2 18 GLN A 16 ? GLN A 12 . ? 1_555 ? 12 AC2 18 TYR A 21 ? TYR A 17 . ? 1_555 ? 13 AC2 18 HIS A 43 ? HIS A 39 . ? 1_555 ? 14 AC2 18 TRP A 46 ? TRP A 42 . ? 1_555 ? 15 AC2 18 PRO A 81 ? PRO A 77 . ? 1_555 ? 16 AC2 18 SER A 82 ? SER A 78 . ? 1_555 ? 17 AC2 18 LEU A 83 ? LEU A 79 . ? 1_555 ? 18 AC2 18 ALA A 84 ? ALA A 80 . ? 1_555 ? 19 AC2 18 PHE A 93 ? PHE A 89 . ? 1_555 ? 20 AC2 18 HIS A 96 ? HIS A 92 . ? 1_555 ? 21 AC2 18 GLU A 97 ? GLU A 93 . ? 1_555 ? 22 AC2 18 LYS A 100 ? LYS A 96 . ? 1_555 ? 23 AC2 18 HIS A 101 ? HIS A 97 . ? 1_555 ? 24 AC2 18 ASN A 131 ? ASN A 127 . ? 1_655 ? 25 AC2 18 TYR A 174 ? TYR A 170 . ? 1_555 ? 26 AC2 18 5GP B . ? 5GP A 295 . ? 1_555 ? 27 AC2 18 HOH D . ? HOH A 381 . ? 1_555 ? 28 AC2 18 HOH D . ? HOH A 384 . ? 1_555 ? # _pdbx_entry_details.entry_id 1VCZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 20 ? ? -106.88 -168.66 2 1 TRP A 76 ? ? -141.90 50.14 3 1 ASN A 120 ? ? 36.04 55.09 4 1 ASP A 162 ? ? -69.75 -173.12 5 1 ARG A 193 ? ? -13.42 103.38 6 1 CYS A 195 ? ? 81.51 111.56 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A TYR -3 ? A TYR 1 2 1 Y 1 A VAL -2 ? A VAL 2 3 1 Y 1 A GLU -1 ? A GLU 3 4 1 Y 1 A PHE 0 ? A PHE 4 5 1 Y 1 A SER 205 ? A SER 209 6 1 Y 1 A SER 206 ? A SER 210 7 1 Y 1 A GLU 207 ? A GLU 211 8 1 Y 1 A SER 208 ? A SER 212 9 1 Y 1 A ASP 209 ? A ASP 213 10 1 Y 1 A HIS 210 ? A HIS 214 11 1 Y 1 A ASP 211 ? A ASP 215 12 1 Y 1 A GLU 212 ? A GLU 216 13 1 Y 1 A PHE 213 ? A PHE 217 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5GP P P N N 1 5GP O1P O N N 2 5GP O2P O N N 3 5GP O3P O N N 4 5GP "O5'" O N N 5 5GP "C5'" C N N 6 5GP "C4'" C N R 7 5GP "O4'" O N N 8 5GP "C3'" C N S 9 5GP "O3'" O N N 10 5GP "C2'" C N R 11 5GP "O2'" O N N 12 5GP "C1'" C N R 13 5GP N9 N Y N 14 5GP C8 C Y N 15 5GP N7 N Y N 16 5GP C5 C Y N 17 5GP C6 C N N 18 5GP O6 O N N 19 5GP N1 N N N 20 5GP C2 C N N 21 5GP N2 N N N 22 5GP N3 N N N 23 5GP C4 C Y N 24 5GP HOP2 H N N 25 5GP HOP3 H N N 26 5GP "H5'1" H N N 27 5GP "H5'2" H N N 28 5GP "H4'" H N N 29 5GP "H3'" H N N 30 5GP "HO3'" H N N 31 5GP "H2'" H N N 32 5GP "HO2'" H N N 33 5GP "H1'" H N N 34 5GP H8 H N N 35 5GP HN1 H N N 36 5GP HN21 H N N 37 5GP HN22 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 CYS N N N N 112 CYS CA C N R 113 CYS C C N N 114 CYS O O N N 115 CYS CB C N N 116 CYS SG S N N 117 CYS OXT O N N 118 CYS H H N N 119 CYS H2 H N N 120 CYS HA H N N 121 CYS HB2 H N N 122 CYS HB3 H N N 123 CYS HG H N N 124 CYS HXT H N N 125 GLN N N N N 126 GLN CA C N S 127 GLN C C N N 128 GLN O O N N 129 GLN CB C N N 130 GLN CG C N N 131 GLN CD C N N 132 GLN OE1 O N N 133 GLN NE2 N N N 134 GLN OXT O N N 135 GLN H H N N 136 GLN H2 H N N 137 GLN HA H N N 138 GLN HB2 H N N 139 GLN HB3 H N N 140 GLN HG2 H N N 141 GLN HG3 H N N 142 GLN HE21 H N N 143 GLN HE22 H N N 144 GLN HXT H N N 145 GLU N N N N 146 GLU CA C N S 147 GLU C C N N 148 GLU O O N N 149 GLU CB C N N 150 GLU CG C N N 151 GLU CD C N N 152 GLU OE1 O N N 153 GLU OE2 O N N 154 GLU OXT O N N 155 GLU H H N N 156 GLU H2 H N N 157 GLU HA H N N 158 GLU HB2 H N N 159 GLU HB3 H N N 160 GLU HG2 H N N 161 GLU HG3 H N N 162 GLU HE2 H N N 163 GLU HXT H N N 164 GLY N N N N 165 GLY CA C N N 166 GLY C C N N 167 GLY O O N N 168 GLY OXT O N N 169 GLY H H N N 170 GLY H2 H N N 171 GLY HA2 H N N 172 GLY HA3 H N N 173 GLY HXT H N N 174 HIS N N N N 175 HIS CA C N S 176 HIS C C N N 177 HIS O O N N 178 HIS CB C N N 179 HIS CG C Y N 180 HIS ND1 N Y N 181 HIS CD2 C Y N 182 HIS CE1 C Y N 183 HIS NE2 N Y N 184 HIS OXT O N N 185 HIS H H N N 186 HIS H2 H N N 187 HIS HA H N N 188 HIS HB2 H N N 189 HIS HB3 H N N 190 HIS HD1 H N N 191 HIS HD2 H N N 192 HIS HE1 H N N 193 HIS HE2 H N N 194 HIS HXT H N N 195 HOH O O N N 196 HOH H1 H N N 197 HOH H2 H N N 198 ILE N N N N 199 ILE CA C N S 200 ILE C C N N 201 ILE O O N N 202 ILE CB C N S 203 ILE CG1 C N N 204 ILE CG2 C N N 205 ILE CD1 C N N 206 ILE OXT O N N 207 ILE H H N N 208 ILE H2 H N N 209 ILE HA H N N 210 ILE HB H N N 211 ILE HG12 H N N 212 ILE HG13 H N N 213 ILE HG21 H N N 214 ILE HG22 H N N 215 ILE HG23 H N N 216 ILE HD11 H N N 217 ILE HD12 H N N 218 ILE HD13 H N N 219 ILE HXT H N N 220 LEU N N N N 221 LEU CA C N S 222 LEU C C N N 223 LEU O O N N 224 LEU CB C N N 225 LEU CG C N N 226 LEU CD1 C N N 227 LEU CD2 C N N 228 LEU OXT O N N 229 LEU H H N N 230 LEU H2 H N N 231 LEU HA H N N 232 LEU HB2 H N N 233 LEU HB3 H N N 234 LEU HG H N N 235 LEU HD11 H N N 236 LEU HD12 H N N 237 LEU HD13 H N N 238 LEU HD21 H N N 239 LEU HD22 H N N 240 LEU HD23 H N N 241 LEU HXT H N N 242 LYS N N N N 243 LYS CA C N S 244 LYS C C N N 245 LYS O O N N 246 LYS CB C N N 247 LYS CG C N N 248 LYS CD C N N 249 LYS CE C N N 250 LYS NZ N N N 251 LYS OXT O N N 252 LYS H H N N 253 LYS H2 H N N 254 LYS HA H N N 255 LYS HB2 H N N 256 LYS HB3 H N N 257 LYS HG2 H N N 258 LYS HG3 H N N 259 LYS HD2 H N N 260 LYS HD3 H N N 261 LYS HE2 H N N 262 LYS HE3 H N N 263 LYS HZ1 H N N 264 LYS HZ2 H N N 265 LYS HZ3 H N N 266 LYS HXT H N N 267 MET N N N N 268 MET CA C N S 269 MET C C N N 270 MET O O N N 271 MET CB C N N 272 MET CG C N N 273 MET SD S N N 274 MET CE C N N 275 MET OXT O N N 276 MET H H N N 277 MET H2 H N N 278 MET HA H N N 279 MET HB2 H N N 280 MET HB3 H N N 281 MET HG2 H N N 282 MET HG3 H N N 283 MET HE1 H N N 284 MET HE2 H N N 285 MET HE3 H N N 286 MET HXT H N N 287 PHE N N N N 288 PHE CA C N S 289 PHE C C N N 290 PHE O O N N 291 PHE CB C N N 292 PHE CG C Y N 293 PHE CD1 C Y N 294 PHE CD2 C Y N 295 PHE CE1 C Y N 296 PHE CE2 C Y N 297 PHE CZ C Y N 298 PHE OXT O N N 299 PHE H H N N 300 PHE H2 H N N 301 PHE HA H N N 302 PHE HB2 H N N 303 PHE HB3 H N N 304 PHE HD1 H N N 305 PHE HD2 H N N 306 PHE HE1 H N N 307 PHE HE2 H N N 308 PHE HZ H N N 309 PHE HXT H N N 310 PRO N N N N 311 PRO CA C N S 312 PRO C C N N 313 PRO O O N N 314 PRO CB C N N 315 PRO CG C N N 316 PRO CD C N N 317 PRO OXT O N N 318 PRO H H N N 319 PRO HA H N N 320 PRO HB2 H N N 321 PRO HB3 H N N 322 PRO HG2 H N N 323 PRO HG3 H N N 324 PRO HD2 H N N 325 PRO HD3 H N N 326 PRO HXT H N N 327 SER N N N N 328 SER CA C N S 329 SER C C N N 330 SER O O N N 331 SER CB C N N 332 SER OG O N N 333 SER OXT O N N 334 SER H H N N 335 SER H2 H N N 336 SER HA H N N 337 SER HB2 H N N 338 SER HB3 H N N 339 SER HG H N N 340 SER HXT H N N 341 THR N N N N 342 THR CA C N S 343 THR C C N N 344 THR O O N N 345 THR CB C N R 346 THR OG1 O N N 347 THR CG2 C N N 348 THR OXT O N N 349 THR H H N N 350 THR H2 H N N 351 THR HA H N N 352 THR HB H N N 353 THR HG1 H N N 354 THR HG21 H N N 355 THR HG22 H N N 356 THR HG23 H N N 357 THR HXT H N N 358 TRP N N N N 359 TRP CA C N S 360 TRP C C N N 361 TRP O O N N 362 TRP CB C N N 363 TRP CG C Y N 364 TRP CD1 C Y N 365 TRP CD2 C Y N 366 TRP NE1 N Y N 367 TRP CE2 C Y N 368 TRP CE3 C Y N 369 TRP CZ2 C Y N 370 TRP CZ3 C Y N 371 TRP CH2 C Y N 372 TRP OXT O N N 373 TRP H H N N 374 TRP H2 H N N 375 TRP HA H N N 376 TRP HB2 H N N 377 TRP HB3 H N N 378 TRP HD1 H N N 379 TRP HE1 H N N 380 TRP HE3 H N N 381 TRP HZ2 H N N 382 TRP HZ3 H N N 383 TRP HH2 H N N 384 TRP HXT H N N 385 TYR N N N N 386 TYR CA C N S 387 TYR C C N N 388 TYR O O N N 389 TYR CB C N N 390 TYR CG C Y N 391 TYR CD1 C Y N 392 TYR CD2 C Y N 393 TYR CE1 C Y N 394 TYR CE2 C Y N 395 TYR CZ C Y N 396 TYR OH O N N 397 TYR OXT O N N 398 TYR H H N N 399 TYR H2 H N N 400 TYR HA H N N 401 TYR HB2 H N N 402 TYR HB3 H N N 403 TYR HD1 H N N 404 TYR HD2 H N N 405 TYR HE1 H N N 406 TYR HE2 H N N 407 TYR HH H N N 408 TYR HXT H N N 409 VAL N N N N 410 VAL CA C N S 411 VAL C C N N 412 VAL O O N N 413 VAL CB C N N 414 VAL CG1 C N N 415 VAL CG2 C N N 416 VAL OXT O N N 417 VAL H H N N 418 VAL H2 H N N 419 VAL HA H N N 420 VAL HB H N N 421 VAL HG11 H N N 422 VAL HG12 H N N 423 VAL HG13 H N N 424 VAL HG21 H N N 425 VAL HG22 H N N 426 VAL HG23 H N N 427 VAL HXT H N N 428 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GP P O1P doub N N 1 5GP P O2P sing N N 2 5GP P O3P sing N N 3 5GP P "O5'" sing N N 4 5GP O2P HOP2 sing N N 5 5GP O3P HOP3 sing N N 6 5GP "O5'" "C5'" sing N N 7 5GP "C5'" "C4'" sing N N 8 5GP "C5'" "H5'1" sing N N 9 5GP "C5'" "H5'2" sing N N 10 5GP "C4'" "O4'" sing N N 11 5GP "C4'" "C3'" sing N N 12 5GP "C4'" "H4'" sing N N 13 5GP "O4'" "C1'" sing N N 14 5GP "C3'" "O3'" sing N N 15 5GP "C3'" "C2'" sing N N 16 5GP "C3'" "H3'" sing N N 17 5GP "O3'" "HO3'" sing N N 18 5GP "C2'" "O2'" sing N N 19 5GP "C2'" "C1'" sing N N 20 5GP "C2'" "H2'" sing N N 21 5GP "O2'" "HO2'" sing N N 22 5GP "C1'" N9 sing N N 23 5GP "C1'" "H1'" sing N N 24 5GP N9 C8 sing Y N 25 5GP N9 C4 sing Y N 26 5GP C8 N7 doub Y N 27 5GP C8 H8 sing N N 28 5GP N7 C5 sing Y N 29 5GP C5 C6 sing N N 30 5GP C5 C4 doub Y N 31 5GP C6 O6 doub N N 32 5GP C6 N1 sing N N 33 5GP N1 C2 sing N N 34 5GP N1 HN1 sing N N 35 5GP C2 N2 sing N N 36 5GP C2 N3 doub N N 37 5GP N2 HN21 sing N N 38 5GP N2 HN22 sing N N 39 5GP N3 C4 sing N N 40 ALA N CA sing N N 41 ALA N H sing N N 42 ALA N H2 sing N N 43 ALA CA C sing N N 44 ALA CA CB sing N N 45 ALA CA HA sing N N 46 ALA C O doub N N 47 ALA C OXT sing N N 48 ALA CB HB1 sing N N 49 ALA CB HB2 sing N N 50 ALA CB HB3 sing N N 51 ALA OXT HXT sing N N 52 ARG N CA sing N N 53 ARG N H sing N N 54 ARG N H2 sing N N 55 ARG CA C sing N N 56 ARG CA CB sing N N 57 ARG CA HA sing N N 58 ARG C O doub N N 59 ARG C OXT sing N N 60 ARG CB CG sing N N 61 ARG CB HB2 sing N N 62 ARG CB HB3 sing N N 63 ARG CG CD sing N N 64 ARG CG HG2 sing N N 65 ARG CG HG3 sing N N 66 ARG CD NE sing N N 67 ARG CD HD2 sing N N 68 ARG CD HD3 sing N N 69 ARG NE CZ sing N N 70 ARG NE HE sing N N 71 ARG CZ NH1 sing N N 72 ARG CZ NH2 doub N N 73 ARG NH1 HH11 sing N N 74 ARG NH1 HH12 sing N N 75 ARG NH2 HH21 sing N N 76 ARG NH2 HH22 sing N N 77 ARG OXT HXT sing N N 78 ASN N CA sing N N 79 ASN N H sing N N 80 ASN N H2 sing N N 81 ASN CA C sing N N 82 ASN CA CB sing N N 83 ASN CA HA sing N N 84 ASN C O doub N N 85 ASN C OXT sing N N 86 ASN CB CG sing N N 87 ASN CB HB2 sing N N 88 ASN CB HB3 sing N N 89 ASN CG OD1 doub N N 90 ASN CG ND2 sing N N 91 ASN ND2 HD21 sing N N 92 ASN ND2 HD22 sing N N 93 ASN OXT HXT sing N N 94 ASP N CA sing N N 95 ASP N H sing N N 96 ASP N H2 sing N N 97 ASP CA C sing N N 98 ASP CA CB sing N N 99 ASP CA HA sing N N 100 ASP C O doub N N 101 ASP C OXT sing N N 102 ASP CB CG sing N N 103 ASP CB HB2 sing N N 104 ASP CB HB3 sing N N 105 ASP CG OD1 doub N N 106 ASP CG OD2 sing N N 107 ASP OD2 HD2 sing N N 108 ASP OXT HXT sing N N 109 CYS N CA sing N N 110 CYS N H sing N N 111 CYS N H2 sing N N 112 CYS CA C sing N N 113 CYS CA CB sing N N 114 CYS CA HA sing N N 115 CYS C O doub N N 116 CYS C OXT sing N N 117 CYS CB SG sing N N 118 CYS CB HB2 sing N N 119 CYS CB HB3 sing N N 120 CYS SG HG sing N N 121 CYS OXT HXT sing N N 122 GLN N CA sing N N 123 GLN N H sing N N 124 GLN N H2 sing N N 125 GLN CA C sing N N 126 GLN CA CB sing N N 127 GLN CA HA sing N N 128 GLN C O doub N N 129 GLN C OXT sing N N 130 GLN CB CG sing N N 131 GLN CB HB2 sing N N 132 GLN CB HB3 sing N N 133 GLN CG CD sing N N 134 GLN CG HG2 sing N N 135 GLN CG HG3 sing N N 136 GLN CD OE1 doub N N 137 GLN CD NE2 sing N N 138 GLN NE2 HE21 sing N N 139 GLN NE2 HE22 sing N N 140 GLN OXT HXT sing N N 141 GLU N CA sing N N 142 GLU N H sing N N 143 GLU N H2 sing N N 144 GLU CA C sing N N 145 GLU CA CB sing N N 146 GLU CA HA sing N N 147 GLU C O doub N N 148 GLU C OXT sing N N 149 GLU CB CG sing N N 150 GLU CB HB2 sing N N 151 GLU CB HB3 sing N N 152 GLU CG CD sing N N 153 GLU CG HG2 sing N N 154 GLU CG HG3 sing N N 155 GLU CD OE1 doub N N 156 GLU CD OE2 sing N N 157 GLU OE2 HE2 sing N N 158 GLU OXT HXT sing N N 159 GLY N CA sing N N 160 GLY N H sing N N 161 GLY N H2 sing N N 162 GLY CA C sing N N 163 GLY CA HA2 sing N N 164 GLY CA HA3 sing N N 165 GLY C O doub N N 166 GLY C OXT sing N N 167 GLY OXT HXT sing N N 168 HIS N CA sing N N 169 HIS N H sing N N 170 HIS N H2 sing N N 171 HIS CA C sing N N 172 HIS CA CB sing N N 173 HIS CA HA sing N N 174 HIS C O doub N N 175 HIS C OXT sing N N 176 HIS CB CG sing N N 177 HIS CB HB2 sing N N 178 HIS CB HB3 sing N N 179 HIS CG ND1 sing Y N 180 HIS CG CD2 doub Y N 181 HIS ND1 CE1 doub Y N 182 HIS ND1 HD1 sing N N 183 HIS CD2 NE2 sing Y N 184 HIS CD2 HD2 sing N N 185 HIS CE1 NE2 sing Y N 186 HIS CE1 HE1 sing N N 187 HIS NE2 HE2 sing N N 188 HIS OXT HXT sing N N 189 HOH O H1 sing N N 190 HOH O H2 sing N N 191 ILE N CA sing N N 192 ILE N H sing N N 193 ILE N H2 sing N N 194 ILE CA C sing N N 195 ILE CA CB sing N N 196 ILE CA HA sing N N 197 ILE C O doub N N 198 ILE C OXT sing N N 199 ILE CB CG1 sing N N 200 ILE CB CG2 sing N N 201 ILE CB HB sing N N 202 ILE CG1 CD1 sing N N 203 ILE CG1 HG12 sing N N 204 ILE CG1 HG13 sing N N 205 ILE CG2 HG21 sing N N 206 ILE CG2 HG22 sing N N 207 ILE CG2 HG23 sing N N 208 ILE CD1 HD11 sing N N 209 ILE CD1 HD12 sing N N 210 ILE CD1 HD13 sing N N 211 ILE OXT HXT sing N N 212 LEU N CA sing N N 213 LEU N H sing N N 214 LEU N H2 sing N N 215 LEU CA C sing N N 216 LEU CA CB sing N N 217 LEU CA HA sing N N 218 LEU C O doub N N 219 LEU C OXT sing N N 220 LEU CB CG sing N N 221 LEU CB HB2 sing N N 222 LEU CB HB3 sing N N 223 LEU CG CD1 sing N N 224 LEU CG CD2 sing N N 225 LEU CG HG sing N N 226 LEU CD1 HD11 sing N N 227 LEU CD1 HD12 sing N N 228 LEU CD1 HD13 sing N N 229 LEU CD2 HD21 sing N N 230 LEU CD2 HD22 sing N N 231 LEU CD2 HD23 sing N N 232 LEU OXT HXT sing N N 233 LYS N CA sing N N 234 LYS N H sing N N 235 LYS N H2 sing N N 236 LYS CA C sing N N 237 LYS CA CB sing N N 238 LYS CA HA sing N N 239 LYS C O doub N N 240 LYS C OXT sing N N 241 LYS CB CG sing N N 242 LYS CB HB2 sing N N 243 LYS CB HB3 sing N N 244 LYS CG CD sing N N 245 LYS CG HG2 sing N N 246 LYS CG HG3 sing N N 247 LYS CD CE sing N N 248 LYS CD HD2 sing N N 249 LYS CD HD3 sing N N 250 LYS CE NZ sing N N 251 LYS CE HE2 sing N N 252 LYS CE HE3 sing N N 253 LYS NZ HZ1 sing N N 254 LYS NZ HZ2 sing N N 255 LYS NZ HZ3 sing N N 256 LYS OXT HXT sing N N 257 MET N CA sing N N 258 MET N H sing N N 259 MET N H2 sing N N 260 MET CA C sing N N 261 MET CA CB sing N N 262 MET CA HA sing N N 263 MET C O doub N N 264 MET C OXT sing N N 265 MET CB CG sing N N 266 MET CB HB2 sing N N 267 MET CB HB3 sing N N 268 MET CG SD sing N N 269 MET CG HG2 sing N N 270 MET CG HG3 sing N N 271 MET SD CE sing N N 272 MET CE HE1 sing N N 273 MET CE HE2 sing N N 274 MET CE HE3 sing N N 275 MET OXT HXT sing N N 276 PHE N CA sing N N 277 PHE N H sing N N 278 PHE N H2 sing N N 279 PHE CA C sing N N 280 PHE CA CB sing N N 281 PHE CA HA sing N N 282 PHE C O doub N N 283 PHE C OXT sing N N 284 PHE CB CG sing N N 285 PHE CB HB2 sing N N 286 PHE CB HB3 sing N N 287 PHE CG CD1 doub Y N 288 PHE CG CD2 sing Y N 289 PHE CD1 CE1 sing Y N 290 PHE CD1 HD1 sing N N 291 PHE CD2 CE2 doub Y N 292 PHE CD2 HD2 sing N N 293 PHE CE1 CZ doub Y N 294 PHE CE1 HE1 sing N N 295 PHE CE2 CZ sing Y N 296 PHE CE2 HE2 sing N N 297 PHE CZ HZ sing N N 298 PHE OXT HXT sing N N 299 PRO N CA sing N N 300 PRO N CD sing N N 301 PRO N H sing N N 302 PRO CA C sing N N 303 PRO CA CB sing N N 304 PRO CA HA sing N N 305 PRO C O doub N N 306 PRO C OXT sing N N 307 PRO CB CG sing N N 308 PRO CB HB2 sing N N 309 PRO CB HB3 sing N N 310 PRO CG CD sing N N 311 PRO CG HG2 sing N N 312 PRO CG HG3 sing N N 313 PRO CD HD2 sing N N 314 PRO CD HD3 sing N N 315 PRO OXT HXT sing N N 316 SER N CA sing N N 317 SER N H sing N N 318 SER N H2 sing N N 319 SER CA C sing N N 320 SER CA CB sing N N 321 SER CA HA sing N N 322 SER C O doub N N 323 SER C OXT sing N N 324 SER CB OG sing N N 325 SER CB HB2 sing N N 326 SER CB HB3 sing N N 327 SER OG HG sing N N 328 SER OXT HXT sing N N 329 THR N CA sing N N 330 THR N H sing N N 331 THR N H2 sing N N 332 THR CA C sing N N 333 THR CA CB sing N N 334 THR CA HA sing N N 335 THR C O doub N N 336 THR C OXT sing N N 337 THR CB OG1 sing N N 338 THR CB CG2 sing N N 339 THR CB HB sing N N 340 THR OG1 HG1 sing N N 341 THR CG2 HG21 sing N N 342 THR CG2 HG22 sing N N 343 THR CG2 HG23 sing N N 344 THR OXT HXT sing N N 345 TRP N CA sing N N 346 TRP N H sing N N 347 TRP N H2 sing N N 348 TRP CA C sing N N 349 TRP CA CB sing N N 350 TRP CA HA sing N N 351 TRP C O doub N N 352 TRP C OXT sing N N 353 TRP CB CG sing N N 354 TRP CB HB2 sing N N 355 TRP CB HB3 sing N N 356 TRP CG CD1 doub Y N 357 TRP CG CD2 sing Y N 358 TRP CD1 NE1 sing Y N 359 TRP CD1 HD1 sing N N 360 TRP CD2 CE2 doub Y N 361 TRP CD2 CE3 sing Y N 362 TRP NE1 CE2 sing Y N 363 TRP NE1 HE1 sing N N 364 TRP CE2 CZ2 sing Y N 365 TRP CE3 CZ3 doub Y N 366 TRP CE3 HE3 sing N N 367 TRP CZ2 CH2 doub Y N 368 TRP CZ2 HZ2 sing N N 369 TRP CZ3 CH2 sing Y N 370 TRP CZ3 HZ3 sing N N 371 TRP CH2 HH2 sing N N 372 TRP OXT HXT sing N N 373 TYR N CA sing N N 374 TYR N H sing N N 375 TYR N H2 sing N N 376 TYR CA C sing N N 377 TYR CA CB sing N N 378 TYR CA HA sing N N 379 TYR C O doub N N 380 TYR C OXT sing N N 381 TYR CB CG sing N N 382 TYR CB HB2 sing N N 383 TYR CB HB3 sing N N 384 TYR CG CD1 doub Y N 385 TYR CG CD2 sing Y N 386 TYR CD1 CE1 sing Y N 387 TYR CD1 HD1 sing N N 388 TYR CD2 CE2 doub Y N 389 TYR CD2 HD2 sing N N 390 TYR CE1 CZ doub Y N 391 TYR CE1 HE1 sing N N 392 TYR CE2 CZ sing Y N 393 TYR CE2 HE2 sing N N 394 TYR CZ OH sing N N 395 TYR OH HH sing N N 396 TYR OXT HXT sing N N 397 VAL N CA sing N N 398 VAL N H sing N N 399 VAL N H2 sing N N 400 VAL CA C sing N N 401 VAL CA CB sing N N 402 VAL CA HA sing N N 403 VAL C O doub N N 404 VAL C OXT sing N N 405 VAL CB CG1 sing N N 406 VAL CB CG2 sing N N 407 VAL CB HB sing N N 408 VAL CG1 HG11 sing N N 409 VAL CG1 HG12 sing N N 410 VAL CG1 HG13 sing N N 411 VAL CG2 HG21 sing N N 412 VAL CG2 HG22 sing N N 413 VAL CG2 HG23 sing N N 414 VAL OXT HXT sing N N 415 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1IYB _pdbx_initial_refinement_model.details 'PDB ENTRY 1IYB' # _atom_sites.entry_id 1VCZ _atom_sites.fract_transf_matrix[1][1] 0.026824 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014379 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013519 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_