data_1VDA # _entry.id 1VDA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VDA pdb_00001vda 10.2210/pdb1vda/pdb RCSB RCSB006488 ? ? WWPDB D_1000006488 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-03-29 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VDA _pdbx_database_status.recvd_initial_deposition_date 2004-03-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1VD7 'Solution structure of FMBP-1 tandem repeat 1' unspecified PDB 1VD8 'Solution structure of FMBP-1 tandem repeat 2' unspecified PDB 1VD9 'Solution structure of FMBP-1 tandem repeat 3' unspecified PDB 1VDB 'NMR structure of FMBP-1 tandem repeat 1 in 30%(v/v) TFE solution' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kawaguchi, K.' 1 'Yamaki, T.' 2 'Aizawa, T.' 3 'Takiya, S.' 4 'Demura, M.' 5 'Nitta, K.' 6 # _citation.id primary _citation.title 'Solution structure of FMBP-1 tandem repeat 4' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kawaguchi, K.' 1 ? primary 'Yamaki, T.' 2 ? primary 'Aizawa, T.' 3 ? primary 'Takiya, S.' 4 ? primary 'Demura, M.' 5 ? primary 'Nitta, K.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Fibroin-modulator-binding-protein-1 _entity.formula_weight 2608.997 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name FMBP-1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ETPAQRQARLLRMSAYAAKRQAS _entity_poly.pdbx_seq_one_letter_code_can ETPAQRQARLLRMSAYAAKRQAS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 THR n 1 3 PRO n 1 4 ALA n 1 5 GLN n 1 6 ARG n 1 7 GLN n 1 8 ALA n 1 9 ARG n 1 10 LEU n 1 11 LEU n 1 12 ARG n 1 13 MET n 1 14 SER n 1 15 ALA n 1 16 TYR n 1 17 ALA n 1 18 ALA n 1 19 LYS n 1 20 ARG n 1 21 GLN n 1 22 ALA n 1 23 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'synthetic construct' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 MET 13 13 13 MET MET A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 SER 23 23 23 SER SER A . n # _exptl.entry_id 1VDA _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1VDA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VDA _struct.title 'Solution structure of FMBP-1 tandem repeat 4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VDA _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TANDEM REPEAT, N-CAP, DNA BINDING, TRANSCRIPTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1VDA _struct_ref.pdbx_db_accession 1VDA _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VDA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 23 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1VDA _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 23 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 23 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 2 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 11 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 2 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 11 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 12 ? ? -163.18 35.25 2 1 MET A 13 ? ? -106.41 74.07 3 1 ALA A 17 ? ? 60.56 98.27 4 1 ALA A 18 ? ? -59.35 -177.63 5 1 ARG A 20 ? ? -106.87 76.33 6 2 ARG A 12 ? ? -165.35 34.69 7 2 SER A 14 ? ? -55.12 96.86 8 2 ALA A 15 ? ? 47.86 95.98 9 2 ALA A 22 ? ? 59.40 -179.63 10 3 ARG A 12 ? ? 179.12 38.93 11 3 ALA A 15 ? ? -149.67 -46.42 12 3 GLN A 21 ? ? 60.46 94.14 13 3 ALA A 22 ? ? 61.16 164.70 14 4 ARG A 12 ? ? -156.12 35.36 15 4 ALA A 15 ? ? 53.10 19.68 16 4 TYR A 16 ? ? 50.99 79.68 17 4 ALA A 18 ? ? 62.46 147.82 18 5 ARG A 12 ? ? -179.48 37.16 19 5 ALA A 15 ? ? -144.93 -46.73 20 5 ALA A 17 ? ? 59.71 76.31 21 5 ALA A 22 ? ? -132.17 -46.03 22 6 ARG A 12 ? ? -170.74 35.03 23 6 MET A 13 ? ? -144.50 -49.09 24 6 SER A 14 ? ? 58.33 -163.48 25 6 TYR A 16 ? ? -53.92 93.42 26 6 GLN A 21 ? ? 60.77 176.90 27 7 ARG A 12 ? ? -173.56 36.47 28 7 MET A 13 ? ? -172.63 37.57 29 7 SER A 14 ? ? -158.61 46.97 30 7 ALA A 17 ? ? 62.24 149.63 31 7 LYS A 19 ? ? 60.29 -177.22 32 7 GLN A 21 ? ? 61.75 114.88 33 8 ARG A 12 ? ? -178.54 36.50 34 8 MET A 13 ? ? -140.68 50.23 35 8 ALA A 17 ? ? 59.75 168.16 36 8 LYS A 19 ? ? 59.74 92.64 37 9 ARG A 12 ? ? -177.31 36.62 38 10 ARG A 12 ? ? -168.91 35.32 39 10 SER A 14 ? ? -149.30 43.60 40 11 ARG A 9 ? ? -144.84 -46.80 41 11 ALA A 15 ? ? -127.46 -73.80 42 11 ALA A 18 ? ? -172.43 -171.23 43 11 ALA A 22 ? ? 60.40 94.14 44 12 TYR A 16 ? ? -57.56 -172.73 45 12 ALA A 18 ? ? 60.78 165.16 46 12 LYS A 19 ? ? -159.57 77.95 47 12 GLN A 21 ? ? -104.87 -60.65 48 13 ARG A 12 ? ? -178.05 37.56 49 13 ALA A 15 ? ? -138.04 -45.97 50 14 ARG A 12 ? ? -178.29 37.18 51 14 ALA A 15 ? ? -144.01 -74.86 52 14 ALA A 18 ? ? 60.26 158.50 53 14 ARG A 20 ? ? -176.48 47.79 54 14 GLN A 21 ? ? -125.26 -66.73 55 15 LEU A 11 ? ? 84.91 42.85 56 15 MET A 13 ? ? -92.28 50.58 57 15 GLN A 21 ? ? 67.48 -69.54 # _pdbx_nmr_ensemble.entry_id 1VDA _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1VDA _pdbx_nmr_representative.conformer_id 5 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.5mM peptide; pH 4 (10mM sodium phosphate buffer, 60mM NaCl); 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 4 _pdbx_nmr_exptl_sample_conditions.ionic_strength 60mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 DQF-COSY 2 1 1 '2D TOCSY' 3 1 1 '2D NOESY' # _pdbx_nmr_details.entry_id 1VDA _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques.' # _pdbx_nmr_refine.entry_id 1VDA _pdbx_nmr_refine.method 'distance geometry simulated annealing' _pdbx_nmr_refine.details ;The structures are based on a total of 133 NOE-derived distance constraints. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.name CNS _pdbx_nmr_software.version 1.1 _pdbx_nmr_software.classification refinement _pdbx_nmr_software.authors ? _pdbx_nmr_software.ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 GLN N N N N 41 GLN CA C N S 42 GLN C C N N 43 GLN O O N N 44 GLN CB C N N 45 GLN CG C N N 46 GLN CD C N N 47 GLN OE1 O N N 48 GLN NE2 N N N 49 GLN OXT O N N 50 GLN H H N N 51 GLN H2 H N N 52 GLN HA H N N 53 GLN HB2 H N N 54 GLN HB3 H N N 55 GLN HG2 H N N 56 GLN HG3 H N N 57 GLN HE21 H N N 58 GLN HE22 H N N 59 GLN HXT H N N 60 GLU N N N N 61 GLU CA C N S 62 GLU C C N N 63 GLU O O N N 64 GLU CB C N N 65 GLU CG C N N 66 GLU CD C N N 67 GLU OE1 O N N 68 GLU OE2 O N N 69 GLU OXT O N N 70 GLU H H N N 71 GLU H2 H N N 72 GLU HA H N N 73 GLU HB2 H N N 74 GLU HB3 H N N 75 GLU HG2 H N N 76 GLU HG3 H N N 77 GLU HE2 H N N 78 GLU HXT H N N 79 LEU N N N N 80 LEU CA C N S 81 LEU C C N N 82 LEU O O N N 83 LEU CB C N N 84 LEU CG C N N 85 LEU CD1 C N N 86 LEU CD2 C N N 87 LEU OXT O N N 88 LEU H H N N 89 LEU H2 H N N 90 LEU HA H N N 91 LEU HB2 H N N 92 LEU HB3 H N N 93 LEU HG H N N 94 LEU HD11 H N N 95 LEU HD12 H N N 96 LEU HD13 H N N 97 LEU HD21 H N N 98 LEU HD22 H N N 99 LEU HD23 H N N 100 LEU HXT H N N 101 LYS N N N N 102 LYS CA C N S 103 LYS C C N N 104 LYS O O N N 105 LYS CB C N N 106 LYS CG C N N 107 LYS CD C N N 108 LYS CE C N N 109 LYS NZ N N N 110 LYS OXT O N N 111 LYS H H N N 112 LYS H2 H N N 113 LYS HA H N N 114 LYS HB2 H N N 115 LYS HB3 H N N 116 LYS HG2 H N N 117 LYS HG3 H N N 118 LYS HD2 H N N 119 LYS HD3 H N N 120 LYS HE2 H N N 121 LYS HE3 H N N 122 LYS HZ1 H N N 123 LYS HZ2 H N N 124 LYS HZ3 H N N 125 LYS HXT H N N 126 MET N N N N 127 MET CA C N S 128 MET C C N N 129 MET O O N N 130 MET CB C N N 131 MET CG C N N 132 MET SD S N N 133 MET CE C N N 134 MET OXT O N N 135 MET H H N N 136 MET H2 H N N 137 MET HA H N N 138 MET HB2 H N N 139 MET HB3 H N N 140 MET HG2 H N N 141 MET HG3 H N N 142 MET HE1 H N N 143 MET HE2 H N N 144 MET HE3 H N N 145 MET HXT H N N 146 PRO N N N N 147 PRO CA C N S 148 PRO C C N N 149 PRO O O N N 150 PRO CB C N N 151 PRO CG C N N 152 PRO CD C N N 153 PRO OXT O N N 154 PRO H H N N 155 PRO HA H N N 156 PRO HB2 H N N 157 PRO HB3 H N N 158 PRO HG2 H N N 159 PRO HG3 H N N 160 PRO HD2 H N N 161 PRO HD3 H N N 162 PRO HXT H N N 163 SER N N N N 164 SER CA C N S 165 SER C C N N 166 SER O O N N 167 SER CB C N N 168 SER OG O N N 169 SER OXT O N N 170 SER H H N N 171 SER H2 H N N 172 SER HA H N N 173 SER HB2 H N N 174 SER HB3 H N N 175 SER HG H N N 176 SER HXT H N N 177 THR N N N N 178 THR CA C N S 179 THR C C N N 180 THR O O N N 181 THR CB C N R 182 THR OG1 O N N 183 THR CG2 C N N 184 THR OXT O N N 185 THR H H N N 186 THR H2 H N N 187 THR HA H N N 188 THR HB H N N 189 THR HG1 H N N 190 THR HG21 H N N 191 THR HG22 H N N 192 THR HG23 H N N 193 THR HXT H N N 194 TYR N N N N 195 TYR CA C N S 196 TYR C C N N 197 TYR O O N N 198 TYR CB C N N 199 TYR CG C Y N 200 TYR CD1 C Y N 201 TYR CD2 C Y N 202 TYR CE1 C Y N 203 TYR CE2 C Y N 204 TYR CZ C Y N 205 TYR OH O N N 206 TYR OXT O N N 207 TYR H H N N 208 TYR H2 H N N 209 TYR HA H N N 210 TYR HB2 H N N 211 TYR HB3 H N N 212 TYR HD1 H N N 213 TYR HD2 H N N 214 TYR HE1 H N N 215 TYR HE2 H N N 216 TYR HH H N N 217 TYR HXT H N N 218 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 GLN N CA sing N N 39 GLN N H sing N N 40 GLN N H2 sing N N 41 GLN CA C sing N N 42 GLN CA CB sing N N 43 GLN CA HA sing N N 44 GLN C O doub N N 45 GLN C OXT sing N N 46 GLN CB CG sing N N 47 GLN CB HB2 sing N N 48 GLN CB HB3 sing N N 49 GLN CG CD sing N N 50 GLN CG HG2 sing N N 51 GLN CG HG3 sing N N 52 GLN CD OE1 doub N N 53 GLN CD NE2 sing N N 54 GLN NE2 HE21 sing N N 55 GLN NE2 HE22 sing N N 56 GLN OXT HXT sing N N 57 GLU N CA sing N N 58 GLU N H sing N N 59 GLU N H2 sing N N 60 GLU CA C sing N N 61 GLU CA CB sing N N 62 GLU CA HA sing N N 63 GLU C O doub N N 64 GLU C OXT sing N N 65 GLU CB CG sing N N 66 GLU CB HB2 sing N N 67 GLU CB HB3 sing N N 68 GLU CG CD sing N N 69 GLU CG HG2 sing N N 70 GLU CG HG3 sing N N 71 GLU CD OE1 doub N N 72 GLU CD OE2 sing N N 73 GLU OE2 HE2 sing N N 74 GLU OXT HXT sing N N 75 LEU N CA sing N N 76 LEU N H sing N N 77 LEU N H2 sing N N 78 LEU CA C sing N N 79 LEU CA CB sing N N 80 LEU CA HA sing N N 81 LEU C O doub N N 82 LEU C OXT sing N N 83 LEU CB CG sing N N 84 LEU CB HB2 sing N N 85 LEU CB HB3 sing N N 86 LEU CG CD1 sing N N 87 LEU CG CD2 sing N N 88 LEU CG HG sing N N 89 LEU CD1 HD11 sing N N 90 LEU CD1 HD12 sing N N 91 LEU CD1 HD13 sing N N 92 LEU CD2 HD21 sing N N 93 LEU CD2 HD22 sing N N 94 LEU CD2 HD23 sing N N 95 LEU OXT HXT sing N N 96 LYS N CA sing N N 97 LYS N H sing N N 98 LYS N H2 sing N N 99 LYS CA C sing N N 100 LYS CA CB sing N N 101 LYS CA HA sing N N 102 LYS C O doub N N 103 LYS C OXT sing N N 104 LYS CB CG sing N N 105 LYS CB HB2 sing N N 106 LYS CB HB3 sing N N 107 LYS CG CD sing N N 108 LYS CG HG2 sing N N 109 LYS CG HG3 sing N N 110 LYS CD CE sing N N 111 LYS CD HD2 sing N N 112 LYS CD HD3 sing N N 113 LYS CE NZ sing N N 114 LYS CE HE2 sing N N 115 LYS CE HE3 sing N N 116 LYS NZ HZ1 sing N N 117 LYS NZ HZ2 sing N N 118 LYS NZ HZ3 sing N N 119 LYS OXT HXT sing N N 120 MET N CA sing N N 121 MET N H sing N N 122 MET N H2 sing N N 123 MET CA C sing N N 124 MET CA CB sing N N 125 MET CA HA sing N N 126 MET C O doub N N 127 MET C OXT sing N N 128 MET CB CG sing N N 129 MET CB HB2 sing N N 130 MET CB HB3 sing N N 131 MET CG SD sing N N 132 MET CG HG2 sing N N 133 MET CG HG3 sing N N 134 MET SD CE sing N N 135 MET CE HE1 sing N N 136 MET CE HE2 sing N N 137 MET CE HE3 sing N N 138 MET OXT HXT sing N N 139 PRO N CA sing N N 140 PRO N CD sing N N 141 PRO N H sing N N 142 PRO CA C sing N N 143 PRO CA CB sing N N 144 PRO CA HA sing N N 145 PRO C O doub N N 146 PRO C OXT sing N N 147 PRO CB CG sing N N 148 PRO CB HB2 sing N N 149 PRO CB HB3 sing N N 150 PRO CG CD sing N N 151 PRO CG HG2 sing N N 152 PRO CG HG3 sing N N 153 PRO CD HD2 sing N N 154 PRO CD HD3 sing N N 155 PRO OXT HXT sing N N 156 SER N CA sing N N 157 SER N H sing N N 158 SER N H2 sing N N 159 SER CA C sing N N 160 SER CA CB sing N N 161 SER CA HA sing N N 162 SER C O doub N N 163 SER C OXT sing N N 164 SER CB OG sing N N 165 SER CB HB2 sing N N 166 SER CB HB3 sing N N 167 SER OG HG sing N N 168 SER OXT HXT sing N N 169 THR N CA sing N N 170 THR N H sing N N 171 THR N H2 sing N N 172 THR CA C sing N N 173 THR CA CB sing N N 174 THR CA HA sing N N 175 THR C O doub N N 176 THR C OXT sing N N 177 THR CB OG1 sing N N 178 THR CB CG2 sing N N 179 THR CB HB sing N N 180 THR OG1 HG1 sing N N 181 THR CG2 HG21 sing N N 182 THR CG2 HG22 sing N N 183 THR CG2 HG23 sing N N 184 THR OXT HXT sing N N 185 TYR N CA sing N N 186 TYR N H sing N N 187 TYR N H2 sing N N 188 TYR CA C sing N N 189 TYR CA CB sing N N 190 TYR CA HA sing N N 191 TYR C O doub N N 192 TYR C OXT sing N N 193 TYR CB CG sing N N 194 TYR CB HB2 sing N N 195 TYR CB HB3 sing N N 196 TYR CG CD1 doub Y N 197 TYR CG CD2 sing Y N 198 TYR CD1 CE1 sing Y N 199 TYR CD1 HD1 sing N N 200 TYR CD2 CE2 doub Y N 201 TYR CD2 HD2 sing N N 202 TYR CE1 CZ doub Y N 203 TYR CE1 HE1 sing N N 204 TYR CE2 CZ sing Y N 205 TYR CE2 HE2 sing N N 206 TYR CZ OH sing N N 207 TYR OH HH sing N N 208 TYR OXT HXT sing N N 209 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DRX 600 2 ? JEOL ALPHA 600 # _atom_sites.entry_id 1VDA _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_