HEADER IMMUNE SYSTEM 05-APR-04 1VES TITLE STRUCTURE OF NEW ANTIGEN RECEPTOR VARIABLE DOMAIN FROM SHARKS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEW ANTIGEN RECEPTOR VARIABLE DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: VNAR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORECTOLOBUS MACULATUS; SOURCE 3 ORGANISM_COMMON: SPOTTED WOBBEGONG; SOURCE 4 ORGANISM_TAXID: 168098; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGC KEYWDS IG VNAR, 12Y-2, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.A.STRELTSOV REVDAT 4 25-OCT-23 1VES 1 REMARK REVDAT 3 13-JUL-11 1VES 1 VERSN REVDAT 2 24-FEB-09 1VES 1 VERSN REVDAT 1 24-AUG-04 1VES 0 JRNL AUTH V.A.STRELTSOV,J.N.VARGHESE,J.A.CARMICHAEL,R.A.IRVING, JRNL AUTH 2 P.J.HUDSON,S.D.NUTTALL JRNL TITL STRUCTURAL EVIDENCE FOR EVOLUTION OF SHARK IG NEW ANTIGEN JRNL TITL 2 RECEPTOR VARIABLE DOMAIN ANTIBODIES FROM A CELL-SURFACE JRNL TITL 3 RECEPTOR JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 12444 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15304650 JRNL DOI 10.1073/PNAS.0403509101 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 783 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1057 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1762 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 358 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : 1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.223 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.392 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1794 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1596 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2422 ; 1.484 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3716 ; 0.868 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 224 ; 6.648 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 270 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1994 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 384 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 303 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1944 ; 0.251 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1227 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 216 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 115 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 43 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1110 ; 0.591 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1780 ; 1.140 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 684 ; 1.826 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 642 ; 3.050 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3834 33.1578 25.0745 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.0299 REMARK 3 T33: 0.1185 T12: 0.0303 REMARK 3 T13: -0.0055 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 3.3390 L22: 4.7309 REMARK 3 L33: 3.2713 L12: -0.1654 REMARK 3 L13: 0.6888 L23: -0.6154 REMARK 3 S TENSOR REMARK 3 S11: 0.1195 S12: 0.0442 S13: -0.2338 REMARK 3 S21: -0.2682 S22: 0.0273 S23: -0.3948 REMARK 3 S31: 0.1461 S32: 0.1933 S33: -0.1468 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7040 46.2053 38.5402 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.2403 REMARK 3 T33: 0.1040 T12: -0.0402 REMARK 3 T13: 0.0700 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 3.2727 L22: 4.0810 REMARK 3 L33: 5.0389 L12: 0.5719 REMARK 3 L13: 0.1006 L23: 0.6479 REMARK 3 S TENSOR REMARK 3 S11: 0.1393 S12: -0.0589 S13: -0.0029 REMARK 3 S21: 0.1389 S22: -0.3008 S23: 0.2593 REMARK 3 S31: -0.0779 S32: -0.5470 S33: 0.1615 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000006538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 113.0 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : AXCO MICROCAPILLARY FOCUSING REMARK 200 OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 180 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14981 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 18.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 32.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 12Y-1 VNAR PDB ENTRY 1VER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 20% V/V ISO REMARK 280 -PROPANOL, 20% PEG4000, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.64150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.11200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.02300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.11200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.64150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.02300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.64150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.02300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.11200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.02300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.64150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.11200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 136 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 193 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 185 O HOH A 286 2.11 REMARK 500 OE1 GLU A 76 O HOH A 284 2.14 REMARK 500 O HOH B 235 O HOH B 266 2.14 REMARK 500 O HOH A 143 O HOH A 256 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 93 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 93 131.41 -171.07 REMARK 500 TYR A 94 -145.02 54.62 REMARK 500 ASN A 95 -8.09 78.12 REMARK 500 LYS B 32 -60.94 -99.29 REMARK 500 LEU B 91 74.54 49.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 112 LYS A 113 149.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VER RELATED DB: PDB REMARK 900 THE SAME PROTEIN (12Y-1) DBREF 1VES A 1 113 UNP Q6X1E6 Q6X1E6_9CHON 1 113 DBREF 1VES B 1 113 UNP Q6X1E6 Q6X1E6_9CHON 1 113 SEQRES 1 A 113 ALA TRP VAL ASP GLN THR PRO ARG THR ALA THR LYS GLU SEQRES 2 A 113 THR GLY GLU SER LEU THR ILE ASN CYS VAL LEU ARG ASP SEQRES 3 A 113 ALA SER PHE GLU LEU LYS ASP THR GLY TRP TYR ARG THR SEQRES 4 A 113 LYS LEU GLY SER THR ASN GLU GLN SER ILE SER ILE GLY SEQRES 5 A 113 GLY ARG TYR VAL GLU THR VAL ASN LYS GLY SER LYS SER SEQRES 6 A 113 PHE SER LEU ARG ILE SER ASP LEU ARG VAL GLU ASP SER SEQRES 7 A 113 GLY THR TYR LYS CYS GLN ALA PHE TYR SER LEU PRO LEU SEQRES 8 A 113 GLY ASP TYR ASN TYR SER LEU LEU PHE ARG GLY GLU LYS SEQRES 9 A 113 GLY ALA GLY THR ALA LEU THR VAL LYS SEQRES 1 B 113 ALA TRP VAL ASP GLN THR PRO ARG THR ALA THR LYS GLU SEQRES 2 B 113 THR GLY GLU SER LEU THR ILE ASN CYS VAL LEU ARG ASP SEQRES 3 B 113 ALA SER PHE GLU LEU LYS ASP THR GLY TRP TYR ARG THR SEQRES 4 B 113 LYS LEU GLY SER THR ASN GLU GLN SER ILE SER ILE GLY SEQRES 5 B 113 GLY ARG TYR VAL GLU THR VAL ASN LYS GLY SER LYS SER SEQRES 6 B 113 PHE SER LEU ARG ILE SER ASP LEU ARG VAL GLU ASP SER SEQRES 7 B 113 GLY THR TYR LYS CYS GLN ALA PHE TYR SER LEU PRO LEU SEQRES 8 B 113 GLY ASP TYR ASN TYR SER LEU LEU PHE ARG GLY GLU LYS SEQRES 9 B 113 GLY ALA GLY THR ALA LEU THR VAL LYS FORMUL 3 HOH *358(H2 O) HELIX 1 1 ARG A 74 ASP A 77 5 4 HELIX 2 2 ARG B 74 ASP B 77 5 4 SHEET 1 A 4 TRP A 2 THR A 6 0 SHEET 2 A 4 LEU A 18 ARG A 25 -1 O ARG A 25 N TRP A 2 SHEET 3 A 4 SER A 65 ILE A 70 -1 O LEU A 68 N ILE A 20 SHEET 4 A 4 TYR A 55 ASN A 60 -1 N ASN A 60 O SER A 65 SHEET 1 B 5 THR A 9 GLU A 13 0 SHEET 2 B 5 THR A 108 LYS A 113 1 O THR A 111 N LYS A 12 SHEET 3 B 5 GLY A 79 LEU A 89 -1 N GLY A 79 O LEU A 110 SHEET 4 B 5 ASP A 33 LYS A 40 -1 N TYR A 37 O LYS A 82 SHEET 5 B 5 GLN A 47 SER A 48 -1 O GLN A 47 N ARG A 38 SHEET 1 C 4 THR A 9 GLU A 13 0 SHEET 2 C 4 THR A 108 LYS A 113 1 O THR A 111 N LYS A 12 SHEET 3 C 4 GLY A 79 LEU A 89 -1 N GLY A 79 O LEU A 110 SHEET 4 C 4 LEU A 98 LYS A 104 -1 O PHE A 100 N TYR A 87 SHEET 1 D 4 TRP B 2 THR B 6 0 SHEET 2 D 4 LEU B 18 ARG B 25 -1 O ARG B 25 N TRP B 2 SHEET 3 D 4 SER B 65 ILE B 70 -1 O ILE B 70 N LEU B 18 SHEET 4 D 4 TYR B 55 ASN B 60 -1 N ASN B 60 O SER B 65 SHEET 1 E 5 THR B 9 GLU B 13 0 SHEET 2 E 5 THR B 108 LYS B 113 1 O THR B 111 N LYS B 12 SHEET 3 E 5 GLY B 79 LEU B 89 -1 N GLY B 79 O LEU B 110 SHEET 4 E 5 ASP B 33 LYS B 40 -1 N TYR B 37 O LYS B 82 SHEET 5 E 5 GLN B 47 SER B 48 -1 O GLN B 47 N ARG B 38 SHEET 1 F 4 THR B 9 GLU B 13 0 SHEET 2 F 4 THR B 108 LYS B 113 1 O THR B 111 N LYS B 12 SHEET 3 F 4 GLY B 79 LEU B 89 -1 N GLY B 79 O LEU B 110 SHEET 4 F 4 LEU B 98 LYS B 104 -1 O PHE B 100 N TYR B 87 SSBOND 1 CYS A 22 CYS A 83 1555 1555 2.03 SSBOND 2 CYS B 22 CYS B 83 1555 1555 2.04 CISPEP 1 THR A 6 PRO A 7 0 -8.21 CISPEP 2 TYR A 94 ASN A 95 0 -6.39 CISPEP 3 THR B 6 PRO B 7 0 -3.51 CISPEP 4 PRO B 90 LEU B 91 0 3.64 CRYST1 65.283 92.046 98.224 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015318 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010181 0.00000