HEADER TRANSPORT PROTEIN 19-APR-04 1VFZ TITLE CRYSTAL STRUCTURE OF THE KIF1A MOTOR DOMAIN COMPLEXED WITH ADP-MG-VO4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (FUSION PROTEIN CONSISTING OF KINESIN-LIKE PROTEIN COMPND 3 KIF1A, KINESIN HEAVY CHAIN ISOFORM 5C AND A HIS TAG; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: MOTOR DOMAIN OF KINESIN-LIKE PROTEIN KIF1A AND RESIDUES COMPND 6 329-334 OF KINESIN HEAVY CHAIN ISOFORM 5C; COMPND 7 SYNONYM: AXONAL TRANSPORTER OF SYNAPTIC VESICLES; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: FUSION PROTEIN COMPRISES RESIDUES 1-355 OF KINESIN- COMPND 10 LIKE PROTEIN KIF1A, AND RESIDUES 329-334 OF KINESIN HEAVY CHAIN COMPND 11 ISOFORM 5C, AND C-TERMINAL TAIL WITH SEQUENCE HHHHH SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-21B KEYWDS KINESIN, MICROTUBULE, MOTOR, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.NITTA,M.KIKKAWA,Y.OKADA,N.HIROKAWA REVDAT 4 25-OCT-23 1VFZ 1 REMARK SEQADV LINK REVDAT 3 23-AUG-17 1VFZ 1 SOURCE REVDAT 2 24-FEB-09 1VFZ 1 VERSN REVDAT 1 10-AUG-04 1VFZ 0 JRNL AUTH R.NITTA,M.KIKKAWA,Y.OKADA,N.HIROKAWA JRNL TITL KIF1A ALTERNATELY USES TWO LOOPS TO BIND MICROTUBULES JRNL REF SCIENCE V. 305 678 2004 JRNL REFN ISSN 0036-8075 JRNL PMID 15286375 JRNL DOI 10.1126/SCIENCE.1096621 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 101547.820 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 16001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1609 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2241 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 246 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2641 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.51000 REMARK 3 B22 (A**2) : 17.47000 REMARK 3 B33 (A**2) : -9.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 24.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.370 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.030 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.210 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.030 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.550 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.42 REMARK 3 BSOL : 63.18 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PARAM.ADP REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : VO4.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : TOPOLOGY.ADP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 5 : VO4.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VFZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000006573. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 93.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17147 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1I5S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, SODIUM ACETATE, TRIS-HCL, REMARK 280 XYLITOL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 297.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.73550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.49600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.90250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.49600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.73550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.90250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 232 REMARK 465 GLU A 233 REMARK 465 ASN A 293 REMARK 465 LYS A 294 REMARK 465 ASN A 295 REMARK 465 LYS A 296 REMARK 465 LYS A 297 REMARK 465 LYS A 298 REMARK 465 LYS A 299 REMARK 465 LYS A 300 REMARK 465 THR A 301 REMARK 465 ASP A 302 REMARK 465 ILE A 354 REMARK 465 ARG A 355 REMARK 465 ASN A 356 REMARK 465 THR A 357 REMARK 465 VAL A 358 REMARK 465 SER A 359 REMARK 465 VAL A 360 REMARK 465 ASN A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 HIS A 366 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 PRO A 202 CG CD REMARK 470 GLN A 353 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 164 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 ILE A 223 CB - CG1 - CD1 ANGL. DEV. = -18.7 DEGREES REMARK 500 ARG A 254 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 42 66.70 -116.76 REMARK 500 PRO A 47 150.60 -49.89 REMARK 500 THR A 60 -104.19 -97.56 REMARK 500 ASN A 66 41.85 -109.12 REMARK 500 ASP A 114 -11.69 81.84 REMARK 500 THR A 133 104.26 -54.53 REMARK 500 CYS A 151 55.48 39.96 REMARK 500 LYS A 161 29.08 178.91 REMARK 500 ASN A 162 77.12 174.75 REMARK 500 LEU A 173 -31.19 -131.21 REMARK 500 THR A 213 -8.41 -58.67 REMARK 500 ASN A 235 -52.49 -142.30 REMARK 500 LYS A 352 -73.13 -130.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 303 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 104 OG REMARK 620 2 ADP A 500 O3B 96.5 REMARK 620 3 HOH A 502 O 88.8 67.7 REMARK 620 4 HOH A 594 O 173.4 89.7 91.8 REMARK 620 5 HOH A 595 O 91.0 165.9 100.6 82.5 REMARK 620 6 HOH A 596 O 93.2 94.7 162.5 88.3 96.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VFV RELATED DB: PDB REMARK 900 KIF1A MOTOR DOMAIN COMPLEXED WITH MG-AMPPNP REMARK 900 RELATED ID: 1VFW RELATED DB: PDB REMARK 900 KIF1A MOTOR DOMAIN COMPLEXED WITH MG-AMPPNP REMARK 900 RELATED ID: 1VFX RELATED DB: PDB REMARK 900 KIF1A MOTOR DOMAIN COMPLEXED WITH ADP-MG-ALFX DBREF 1VFZ A 1 355 UNP P33173 KF1A_MOUSE 1 355 DBREF 1VFZ A 356 361 UNP P28738 KF5C_MOUSE 329 334 SEQADV 1VFZ HIS A 362 UNP P28738 EXPRESSION TAG SEQADV 1VFZ HIS A 363 UNP P28738 EXPRESSION TAG SEQADV 1VFZ HIS A 364 UNP P28738 EXPRESSION TAG SEQADV 1VFZ HIS A 365 UNP P28738 EXPRESSION TAG SEQADV 1VFZ HIS A 366 UNP P28738 EXPRESSION TAG SEQRES 1 A 366 MET ALA GLY ALA SER VAL LYS VAL ALA VAL ARG VAL ARG SEQRES 2 A 366 PRO PHE ASN SER ARG GLU MET SER ARG ASP SER LYS CYS SEQRES 3 A 366 ILE ILE GLN MET SER GLY SER THR THR THR ILE VAL ASN SEQRES 4 A 366 PRO LYS GLN PRO LYS GLU THR PRO LYS SER PHE SER PHE SEQRES 5 A 366 ASP TYR SER TYR TRP SER HIS THR SER PRO GLU ASP ILE SEQRES 6 A 366 ASN TYR ALA SER GLN LYS GLN VAL TYR ARG ASP ILE GLY SEQRES 7 A 366 GLU GLU MET LEU GLN HIS ALA PHE GLU GLY TYR ASN VAL SEQRES 8 A 366 CYS ILE PHE ALA TYR GLY GLN THR GLY ALA GLY LYS SER SEQRES 9 A 366 TYR THR MET MET GLY LYS GLN GLU LYS ASP GLN GLN GLY SEQRES 10 A 366 ILE ILE PRO GLN LEU CYS GLU ASP LEU PHE SER ARG ILE SEQRES 11 A 366 ASN ASP THR THR ASN ASP ASN MET SER TYR SER VAL GLU SEQRES 12 A 366 VAL SER TYR MET GLU ILE TYR CYS GLU ARG VAL ARG ASP SEQRES 13 A 366 LEU LEU ASN PRO LYS ASN LYS GLY ASN LEU ARG VAL ARG SEQRES 14 A 366 GLU HIS PRO LEU LEU GLY PRO TYR VAL GLU ASP LEU SER SEQRES 15 A 366 LYS LEU ALA VAL THR SER TYR ASN ASP ILE GLN ASP LEU SEQRES 16 A 366 MET ASP SER GLY ASN LYS PRO ARG THR VAL ALA ALA THR SEQRES 17 A 366 ASN MET ASN GLU THR SER SER ARG SER HIS ALA VAL PHE SEQRES 18 A 366 ASN ILE ILE PHE THR GLN LYS ARG HIS ASP ALA GLU THR SEQRES 19 A 366 ASN ILE THR THR GLU LYS VAL SER LYS ILE SER LEU VAL SEQRES 20 A 366 ASP LEU ALA GLY SER GLU ARG ALA ASP SER THR GLY ALA SEQRES 21 A 366 LYS GLY THR ARG LEU LYS GLU GLY ALA ASN ILE ASN LYS SEQRES 22 A 366 SER LEU THR THR LEU GLY LYS VAL ILE SER ALA LEU ALA SEQRES 23 A 366 GLU MET ASP SER GLY PRO ASN LYS ASN LYS LYS LYS LYS SEQRES 24 A 366 LYS THR ASP PHE ILE PRO TYR ARG ASP SER VAL LEU THR SEQRES 25 A 366 TRP LEU LEU ARG GLU ASN LEU GLY GLY ASN SER ARG THR SEQRES 26 A 366 ALA MET VAL ALA ALA LEU SER PRO ALA ASP ILE ASN TYR SEQRES 27 A 366 ASP GLU THR LEU SER THR LEU ARG TYR ALA ASP ARG ALA SEQRES 28 A 366 LYS GLN ILE ARG ASN THR VAL SER VAL ASN HIS HIS HIS SEQRES 29 A 366 HIS HIS HET VO4 A 400 5 HET MG A 501 1 HET ADP A 500 27 HETNAM VO4 VANADATE ION HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 VO4 O4 V 3- FORMUL 3 MG MG 2+ FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 HOH *174(H2 O) HELIX 1 1 ASN A 16 ARG A 22 1 7 HELIX 2 2 SER A 69 GLU A 87 1 19 HELIX 3 3 GLY A 102 MET A 108 1 7 HELIX 4 4 GLY A 117 ASN A 131 1 15 HELIX 5 5 SER A 188 VAL A 205 1 18 HELIX 6 6 ALA A 206 MET A 210 5 5 HELIX 7 7 GLY A 251 ASP A 256 5 6 HELIX 8 8 ARG A 264 GLY A 291 1 28 HELIX 9 9 PRO A 305 ASP A 308 5 4 HELIX 10 10 SER A 309 LEU A 315 1 7 HELIX 11 11 ARG A 316 GLY A 320 5 5 HELIX 12 12 ALA A 334 ILE A 336 5 3 HELIX 13 13 ASN A 337 ALA A 351 1 15 SHEET 1 A 8 TYR A 54 TRP A 57 0 SHEET 2 A 8 VAL A 6 VAL A 12 1 N VAL A 10 O TYR A 56 SHEET 3 A 8 ARG A 324 LEU A 331 1 O LEU A 331 N ARG A 11 SHEET 4 A 8 VAL A 91 GLY A 97 1 N TYR A 96 O ALA A 330 SHEET 5 A 8 THR A 237 ASP A 248 1 O VAL A 247 N ILE A 93 SHEET 6 A 8 HIS A 218 HIS A 230 -1 N GLN A 227 O LYS A 240 SHEET 7 A 8 MET A 138 TYR A 150 -1 N SER A 139 O LYS A 228 SHEET 8 A 8 ARG A 153 ASP A 156 -1 O ARG A 153 N TYR A 150 SHEET 1 B 8 TYR A 54 TRP A 57 0 SHEET 2 B 8 VAL A 6 VAL A 12 1 N VAL A 10 O TYR A 56 SHEET 3 B 8 ARG A 324 LEU A 331 1 O LEU A 331 N ARG A 11 SHEET 4 B 8 VAL A 91 GLY A 97 1 N TYR A 96 O ALA A 330 SHEET 5 B 8 THR A 237 ASP A 248 1 O VAL A 247 N ILE A 93 SHEET 6 B 8 HIS A 218 HIS A 230 -1 N GLN A 227 O LYS A 240 SHEET 7 B 8 MET A 138 TYR A 150 -1 N SER A 139 O LYS A 228 SHEET 8 B 8 LEU A 184 ALA A 185 -1 O LEU A 184 N VAL A 144 SHEET 1 C 3 ILE A 28 SER A 31 0 SHEET 2 C 3 THR A 34 ILE A 37 -1 O THR A 34 N SER A 31 SHEET 3 C 3 LYS A 48 SER A 51 -1 O LYS A 48 N ILE A 37 SHEET 1 D 2 VAL A 168 HIS A 171 0 SHEET 2 D 2 GLY A 175 VAL A 178 -1 O TYR A 177 N ARG A 169 LINK OG SER A 104 MG MG A 501 1555 1555 2.23 LINK O3B ADP A 500 MG MG A 501 1555 1555 2.40 LINK MG MG A 501 O HOH A 502 1555 1555 2.33 LINK MG MG A 501 O HOH A 594 1555 1555 2.24 LINK MG MG A 501 O HOH A 595 1555 1555 2.19 LINK MG MG A 501 O HOH A 596 1555 1555 2.21 CISPEP 1 THR A 234 ASN A 235 0 0.04 CISPEP 2 ALA A 260 LYS A 261 0 -7.80 SITE 1 AC1 8 GLN A 72 MET A 210 GLU A 212 ARG A 216 SITE 2 AC1 8 GLY A 262 HOH A 581 HOH A 613 HOH A 625 SITE 1 AC2 6 SER A 104 ADP A 500 HOH A 502 HOH A 594 SITE 2 AC2 6 HOH A 595 HOH A 596 SITE 1 AC3 22 ARG A 11 ARG A 13 SER A 58 GLU A 63 SITE 2 AC3 22 ASP A 64 ILE A 65 TYR A 67 THR A 99 SITE 3 AC3 22 GLY A 100 ALA A 101 GLY A 102 LYS A 103 SITE 4 AC3 22 SER A 104 TYR A 105 MG A 501 HOH A 502 SITE 5 AC3 22 HOH A 549 HOH A 583 HOH A 589 HOH A 594 SITE 6 AC3 22 HOH A 596 HOH A 645 CRYST1 41.471 51.805 156.992 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024113 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006370 0.00000