HEADER    PROTEIN TRANSPORT                       22-APR-04   1VG1              
TITLE     GDP-BOUND RAB7                                                        
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: RAS-RELATED PROTEIN RAB-7;                                 
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: GTPASE DOMAIN;                                             
COMPND   5 SYNONYM: RAS-RELATED PROTEIN P23, RAS-RELATED PROTEIN BRL-RAS;       
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS;                              
SOURCE   3 ORGANISM_COMMON: NORWAY RAT;                                         
SOURCE   4 ORGANISM_TAXID: 10116;                                               
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET19                                     
KEYWDS    GTP-BINDING PROTEIN, PROTEIN TRANSPORT                                
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    A.RAK,O.PYLYPENKO,A.NICULAE,K.PYATKOV,R.S.GOODY,K.ALEXANDROV          
REVDAT   4   25-OCT-23 1VG1    1       REMARK LINK                              
REVDAT   3   04-OCT-17 1VG1    1       REMARK                                   
REVDAT   2   24-FEB-09 1VG1    1       VERSN                                    
REVDAT   1   20-JUL-04 1VG1    0                                                
JRNL        AUTH   A.RAK,O.PYLYPENKO,A.NICULAE,K.PYATKOV,R.S.GOODY,K.ALEXANDROV 
JRNL        TITL   STRUCTURE OF THE RAB7:REP-1 COMPLEX: INSIGHTS INTO THE       
JRNL        TITL 2 MECHANISM OF RAB PRENYLATION AND CHOROIDEREMIA DISEASE       
JRNL        REF    CELL(CAMBRIDGE,MASS.)         V. 117   749 2004              
JRNL        REFN                   ISSN 0092-8674                               
JRNL        PMID   15186776                                                     
JRNL        DOI    10.1016/J.CELL.2004.05.017                                   
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.0                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 18.79                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 2358514.380                    
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 99.4                           
REMARK   3   NUMBER OF REFLECTIONS             : 13858                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.187                           
REMARK   3   FREE R VALUE                     : 0.247                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 694                             
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.009                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.90                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.02                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 99.10                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 2140                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2270                       
REMARK   3   BIN FREE R VALUE                    : 0.2840                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 5.00                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 113                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.027                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 1333                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 29                                      
REMARK   3   SOLVENT ATOMS            : 144                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 27.70                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 24.50                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.00000                                              
REMARK   3    B22 (A**2) : 0.00000                                              
REMARK   3    B33 (A**2) : 0.00000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.20                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.12                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.27                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.20                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.015                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.700                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 23.80                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 1.090                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 3.090 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 3.770 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 4.530 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 5.860 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.38                                                 
REMARK   3   BSOL        : 53.55                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : PG4_XPLOR_PARAM.TXT                            
REMARK   3  PARAMETER FILE  3  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  4  : ION.PARAM                                      
REMARK   3  PARAMETER FILE  5  : GDP_XPLOR_PARAM.TXT                            
REMARK   3  PARAMETER FILE  6  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : NULL                                           
REMARK   3  TOPOLOGY FILE  3   : NULL                                           
REMARK   3  TOPOLOGY FILE  4   : NULL                                           
REMARK   3  TOPOLOGY FILE  5   : NULL                                           
REMARK   3  TOPOLOGY FILE  6   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1VG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-04.                  
REMARK 100 THE DEPOSITION ID IS D_1000006575.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 02-JUL-02                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.2                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : ENRAF-NONIUS FR591                 
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : OSMIC MIRRORS                      
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : MARRESEARCH                        
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : PRODC                              
REMARK 200  DATA SCALING SOFTWARE          : XDS                                
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 13877                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.900                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 18.800                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 1.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.2                               
REMARK 200  DATA REDUNDANCY                : 5.700                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 0.05700                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 20.2000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.00                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.0                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 5.70                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.32200                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 5.700                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: RAB7 FROM REP1:RAB7 COMPLEX (PDB CODE 1VG0)          
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 42.50                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.25M AMMONIUM             
REMARK 280  PHOSPHATE, PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE       
REMARK 280  298K                                                                
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -X,Y,-Z+1/2                                             
REMARK 290       4555   X,-Y,-Z                                                 
REMARK 290       5555   X+1/2,Y+1/2,Z                                           
REMARK 290       6555   -X+1/2,-Y+1/2,Z+1/2                                     
REMARK 290       7555   -X+1/2,Y+1/2,-Z+1/2                                     
REMARK 290       8555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       25.85000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       25.85000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000       32.25000            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       51.60000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   6 -1.000000  0.000000  0.000000       32.25000            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       51.60000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       25.85000            
REMARK 290   SMTRY1   7 -1.000000  0.000000  0.000000       32.25000            
REMARK 290   SMTRY2   7  0.000000  1.000000  0.000000       51.60000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000       25.85000            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000       32.25000            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000       51.60000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A1144  LIES ON A SPECIAL POSITION.                          
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     THR A     2                                                      
REMARK 465     SER A     3                                                      
REMARK 465     ARG A     4                                                      
REMARK 465     ASN A    35                                                      
REMARK 465     GLN A    36                                                      
REMARK 465     TYR A    37                                                      
REMARK 465     LYS A    38                                                      
REMARK 465     ALA A    39                                                      
REMARK 465     THR A    40                                                      
REMARK 465     ILE A    41                                                      
REMARK 465     GLY A    42                                                      
REMARK 465     ALA A    65                                                      
REMARK 465     GLY A    66                                                      
REMARK 465     GLN A    67                                                      
REMARK 465     GLU A    68                                                      
REMARK 465     ARG A    69                                                      
REMARK 465     PHE A    70                                                      
REMARK 465     GLN A    71                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASP A  53     -107.85     64.11                                   
REMARK 500    LYS A 126       30.50     76.13                                   
REMARK 500    LYS A 146       51.81   -115.50                                   
REMARK 500    ASN A 161       13.21     57.49                                   
REMARK 500    ASN A 184       59.29     37.98                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A3000  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 THR A  22   OG1                                                    
REMARK 620 2 HOH A1085   O   178.6                                              
REMARK 620 3 HOH A1087   O    87.5  91.1                                        
REMARK 620 4 HOH A1088   O    72.8 108.5 160.3                                  
REMARK 620 5 HOH A1153   O    74.4 105.4  91.2  82.2                            
REMARK 620 6 GDP A1557   O3B  82.2  98.0  84.8  93.8 156.4                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3000                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 1557                
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1VG0   RELATED DB: PDB                                   
REMARK 900 THE REP-1 PROTEIN IN COMPLEX WITH MONOPRENYLATED RAB7 PROTEIN        
REMARK 900 RELATED ID: 1VG8   RELATED DB: PDB                                   
REMARK 900 GPPNHP-BOUND RAB7                                                    
REMARK 900 RELATED ID: 1VG9   RELATED DB: PDB                                   
REMARK 900 THE REP-1 PROTEIN IN COMPLEX WITH C-TERMINALLY TRUNCATED RAB7        
REMARK 900 PROTEIN                                                              
DBREF  1VG1 A    1   185  UNP    P09527   RAB7_RAT         1    185             
SEQRES   1 A  185  MET THR SER ARG LYS LYS VAL LEU LEU LYS VAL ILE ILE          
SEQRES   2 A  185  LEU GLY ASP SER GLY VAL GLY LYS THR SER LEU MET ASN          
SEQRES   3 A  185  GLN TYR VAL ASN LYS LYS PHE SER ASN GLN TYR LYS ALA          
SEQRES   4 A  185  THR ILE GLY ALA ASP PHE LEU THR LYS GLU VAL MET VAL          
SEQRES   5 A  185  ASP ASP ARG LEU VAL THR MET GLN ILE TRP ASP THR ALA          
SEQRES   6 A  185  GLY GLN GLU ARG PHE GLN SER LEU GLY VAL ALA PHE TYR          
SEQRES   7 A  185  ARG GLY ALA ASP CYS CYS VAL LEU VAL PHE ASP VAL THR          
SEQRES   8 A  185  ALA PRO ASN THR PHE LYS THR LEU ASP SER TRP ARG ASP          
SEQRES   9 A  185  GLU PHE LEU ILE GLN ALA SER PRO ARG ASP PRO GLU ASN          
SEQRES  10 A  185  PHE PRO PHE VAL VAL LEU GLY ASN LYS ILE ASP LEU GLU          
SEQRES  11 A  185  ASN ARG GLN VAL ALA THR LYS ARG ALA GLN ALA TRP CYS          
SEQRES  12 A  185  TYR SER LYS ASN ASN ILE PRO TYR PHE GLU THR SER ALA          
SEQRES  13 A  185  LYS GLU ALA ILE ASN VAL GLU GLN ALA PHE GLN THR ILE          
SEQRES  14 A  185  ALA ARG ASN ALA LEU LYS GLN GLU THR GLU VAL GLU LEU          
SEQRES  15 A  185  TYR ASN GLU                                                  
HET     MG  A3000       1                                                       
HET    GDP  A1557      28                                                       
HETNAM      MG MAGNESIUM ION                                                    
HETNAM     GDP GUANOSINE-5'-DIPHOSPHATE                                         
FORMUL   2   MG    MG 2+                                                        
FORMUL   3  GDP    C10 H15 N5 O11 P2                                            
FORMUL   4  HOH   *144(H2 O)                                                    
HELIX    1   1 GLY A   20  LYS A   31  1                                  12    
HELIX    2   2 GLY A   74  GLY A   80  1                                   7    
HELIX    3   3 ALA A   92  THR A   98  1                                   7    
HELIX    4   4 THR A   98  SER A  111  1                                  14    
HELIX    5   5 ALA A  135  SER A  145  1                                  11    
HELIX    6   6 ASN A  161  TYR A  183  1                                  23    
SHEET    1   A 6 ASP A  44  VAL A  52  0                                        
SHEET    2   A 6 ARG A  55  ASP A  63 -1  O  ARG A  55   N  VAL A  52           
SHEET    3   A 6 LEU A   8  LEU A  14  1  N  VAL A  11   O  TRP A  62           
SHEET    4   A 6 CYS A  83  ASP A  89  1  O  VAL A  85   N  ILE A  12           
SHEET    5   A 6 PHE A 120  ASN A 125  1  O  VAL A 121   N  LEU A  86           
SHEET    6   A 6 TYR A 151  THR A 154  1  O  PHE A 152   N  GLY A 124           
LINK         OG1 THR A  22                MG    MG A3000     1555   1555  2.41  
LINK         O   HOH A1085                MG    MG A3000     1555   1555  2.45  
LINK         O   HOH A1087                MG    MG A3000     1555   1555  2.04  
LINK         O   HOH A1088                MG    MG A3000     1555   1555  2.17  
LINK         O   HOH A1153                MG    MG A3000     1555   1555  2.20  
LINK         O3B GDP A1557                MG    MG A3000     1555   1555  2.13  
SITE     1 AC1  6 THR A  22  HOH A1085  HOH A1087  HOH A1088                    
SITE     2 AC1  6 HOH A1153  GDP A1557                                          
SITE     1 AC2 21 GLY A  18  VAL A  19  GLY A  20  LYS A  21                    
SITE     2 AC2 21 THR A  22  SER A  23  PHE A  33  ASN A 125                    
SITE     3 AC2 21 LYS A 126  ASP A 128  LEU A 129  SER A 155                    
SITE     4 AC2 21 ALA A 156  LYS A 157  HOH A1033  HOH A1048                    
SITE     5 AC2 21 HOH A1085  HOH A1087  HOH A1088  HOH A1091                    
SITE     6 AC2 21  MG A3000                                                     
CRYST1   64.500  103.200   51.700  90.00  90.00  90.00 C 2 2 21      8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.015504  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.009690  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.019342        0.00000