HEADER TRANSFERASE 28-APR-04 1VGR TITLE FORMYL-COA TRANSFERASE MUTANT ASP169 TO GLU COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMYL-COENZYME A TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FORMYL-COA TRANSFERASE; COMPND 5 EC: 2.8.3.16; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OXALOBACTER FORMIGENES; SOURCE 3 ORGANISM_TAXID: 847; SOURCE 4 GENE: FRC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET9A KEYWDS COA TRANSFERASE, OXALATE, OXALATE DEGRADATION, INTERTWINED, KNOTTED KEYWDS 2 FOLD, CAIB-BAIF FAMILY, COA COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RICAGNO,S.JONSSON,N.G.RICHARDS,Y.LINDQVIST REVDAT 6 25-OCT-23 1VGR 1 REMARK REVDAT 5 10-NOV-21 1VGR 1 REMARK SEQADV REVDAT 4 13-JUL-11 1VGR 1 VERSN REVDAT 3 24-FEB-09 1VGR 1 VERSN REVDAT 2 14-SEP-04 1VGR 1 JRNL REVDAT 1 03-AUG-04 1VGR 0 JRNL AUTH S.JONSSON,S.RICAGNO,Y.LINDQVIST,N.G.RICHARDS JRNL TITL KINETIC AND MECHANISTIC CHARACTERIZATION OF THE FORMYL-COA JRNL TITL 2 TRANSFERASE FROM OXALOBACTER FORMIGENES JRNL REF J.BIOL.CHEM. V. 279 36003 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15213226 JRNL DOI 10.1074/JBC.M404873200 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 61094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3275 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4431 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 246 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 453 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.894 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6871 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 6125 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9306 ; 1.376 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14318 ; 0.830 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 850 ; 6.268 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 990 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7636 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1320 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1524 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 7353 ; 0.234 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3895 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 412 ; 0.221 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.128 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4225 ; 0.751 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6776 ; 1.386 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2646 ; 1.823 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2530 ; 2.925 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 428 REMARK 3 ORIGIN FOR THE GROUP (A): -36.2440 21.9870 8.5970 REMARK 3 T TENSOR REMARK 3 T11: 0.0429 T22: 0.0213 REMARK 3 T33: 0.0352 T12: 0.0171 REMARK 3 T13: 0.0149 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.6674 L22: 0.3161 REMARK 3 L33: 0.4725 L12: 0.0302 REMARK 3 L13: -0.3212 L23: 0.0106 REMARK 3 S TENSOR REMARK 3 S11: -0.0353 S12: -0.0166 S13: -0.0064 REMARK 3 S21: 0.0962 S22: -0.0235 S23: 0.0630 REMARK 3 S31: 0.0111 S32: -0.0208 S33: 0.0587 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 428 REMARK 3 ORIGIN FOR THE GROUP (A): -34.2250 17.8850 0.7020 REMARK 3 T TENSOR REMARK 3 T11: 0.0332 T22: 0.0173 REMARK 3 T33: 0.0248 T12: 0.0086 REMARK 3 T13: 0.0070 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.5811 L22: 0.5131 REMARK 3 L33: 0.4547 L12: 0.0650 REMARK 3 L13: 0.0214 L23: 0.1507 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: -0.0367 S13: 0.0071 REMARK 3 S21: 0.0248 S22: -0.0164 S23: 0.0776 REMARK 3 S31: 0.0211 S32: -0.0514 S33: -0.0046 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VGR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000006598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.812 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61094 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.64000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1P5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, HEPES, MG CHLORIDE, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 75.02100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.02100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.82250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 75.02100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.02100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.82250 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 75.02100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 75.02100 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 49.82250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 75.02100 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 75.02100 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 49.82250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY B 240 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 319 O HOH A 536 1.94 REMARK 500 O HOH A 468 O HOH A 471 1.99 REMARK 500 O ALA B 329 O HOH B 1588 1.99 REMARK 500 OD2 ASP A 297 O HOH A 468 2.07 REMARK 500 O HOH A 550 O HOH B 1440 2.08 REMARK 500 O HOH A 505 O HOH A 568 2.08 REMARK 500 O HOH A 468 O HOH A 640 2.15 REMARK 500 OD1 ASP B 237 O ASP B 239 2.16 REMARK 500 O ASP A 294 O HOH A 468 2.17 REMARK 500 O HOH B 1458 O HOH B 1511 2.18 REMARK 500 O GLY B 240 O HOH B 1619 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 275 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 297 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 214 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 PRO B 242 CA - N - CD ANGL. DEV. = -9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 16 -114.06 73.86 REMARK 500 GLN A 17 -58.85 -126.01 REMARK 500 ASN A 54 -14.13 81.85 REMARK 500 ASN A 96 -95.22 -105.57 REMARK 500 PHE A 97 174.39 55.03 REMARK 500 GLU A 169 -77.44 -90.99 REMARK 500 LYS A 316 6.51 -150.63 REMARK 500 GLN A 426 33.42 70.40 REMARK 500 VAL B 16 -115.55 63.61 REMARK 500 GLN B 17 -52.61 -128.15 REMARK 500 ASN B 54 18.47 59.91 REMARK 500 LYS B 75 41.59 -85.37 REMARK 500 ASN B 96 42.48 -144.93 REMARK 500 GLU B 140 -76.27 -11.09 REMARK 500 GLU B 169 -79.64 -95.83 REMARK 500 ASN B 233 56.54 29.27 REMARK 500 ASP B 237 -162.00 -76.99 REMARK 500 ASP B 297 40.28 35.06 REMARK 500 ARG B 313 -34.75 -172.72 REMARK 500 LYS B 331 134.13 178.46 REMARK 500 LYS B 333 -57.92 -21.99 REMARK 500 PRO B 346 86.29 -68.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B 1429 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P5H RELATED DB: PDB REMARK 900 FRC (APOENZYME) REMARK 900 RELATED ID: 1P5R RELATED DB: PDB REMARK 900 FRC (COA COMPLEX) REMARK 900 RELATED ID: 1VGQ RELATED DB: PDB REMARK 900 FRC (MUTANT D169A) REMARK 900 RELATED ID: 1T3Z RELATED DB: PDB REMARK 900 FRC (MUTANT D169S) DBREF 1VGR A 2 428 UNP O06644 FCTA_OXAFO 1 427 DBREF 1VGR B 2 428 UNP O06644 FCTA_OXAFO 1 427 SEQADV 1VGR GLU A 169 UNP O06644 ASP 168 ENGINEERED MUTATION SEQADV 1VGR ILE A 186 UNP O06644 MET 185 SEE REMARK 999 SEQADV 1VGR GLU B 169 UNP O06644 ASP 168 ENGINEERED MUTATION SEQADV 1VGR ILE B 186 UNP O06644 MET 185 SEE REMARK 999 SEQRES 1 A 427 THR LYS PRO LEU ASP GLY ILE ASN VAL LEU ASP PHE THR SEQRES 2 A 427 HIS VAL GLN ALA GLY PRO ALA CYS THR GLN MET MET GLY SEQRES 3 A 427 PHE LEU GLY ALA ASN VAL ILE LYS ILE GLU ARG ARG GLY SEQRES 4 A 427 SER GLY ASP MET THR ARG GLY TRP LEU GLN ASP LYS PRO SEQRES 5 A 427 ASN VAL ASP SER LEU TYR PHE THR MET PHE ASN CYS ASN SEQRES 6 A 427 LYS ARG SER ILE GLU LEU ASP MET LYS THR PRO GLU GLY SEQRES 7 A 427 LYS GLU LEU LEU GLU GLN MET ILE LYS LYS ALA ASP VAL SEQRES 8 A 427 MET VAL GLU ASN PHE GLY PRO GLY ALA LEU ASP ARG MET SEQRES 9 A 427 GLY PHE THR TRP GLU TYR ILE GLN GLU LEU ASN PRO ARG SEQRES 10 A 427 VAL ILE LEU ALA SER VAL LYS GLY TYR ALA GLU GLY HIS SEQRES 11 A 427 ALA ASN GLU HIS LEU LYS VAL TYR GLU ASN VAL ALA GLN SEQRES 12 A 427 CYS SER GLY GLY ALA ALA ALA THR THR GLY PHE TRP ASP SEQRES 13 A 427 GLY PRO PRO THR VAL SER GLY ALA ALA LEU GLY GLU SER SEQRES 14 A 427 ASN SER GLY MET HIS LEU MET ILE GLY ILE LEU ALA ALA SEQRES 15 A 427 LEU GLU ILE ARG HIS LYS THR GLY ARG GLY GLN LYS VAL SEQRES 16 A 427 ALA VAL ALA MET GLN ASP ALA VAL LEU ASN LEU VAL ARG SEQRES 17 A 427 ILE LYS LEU ARG ASP GLN GLN ARG LEU GLU ARG THR GLY SEQRES 18 A 427 ILE LEU ALA GLU TYR PRO GLN ALA GLN PRO ASN PHE ALA SEQRES 19 A 427 PHE ASP ARG ASP GLY ASN PRO LEU SER PHE ASP ASN ILE SEQRES 20 A 427 THR SER VAL PRO ARG GLY GLY ASN ALA GLY GLY GLY GLY SEQRES 21 A 427 GLN PRO GLY TRP MET LEU LYS CYS LYS GLY TRP GLU THR SEQRES 22 A 427 ASP ALA ASP SER TYR VAL TYR PHE THR ILE ALA ALA ASN SEQRES 23 A 427 MET TRP PRO GLN ILE CYS ASP MET ILE ASP LYS PRO GLU SEQRES 24 A 427 TRP LYS ASP ASP PRO ALA TYR ASN THR PHE GLU GLY ARG SEQRES 25 A 427 VAL ASP LYS LEU MET ASP ILE PHE SER PHE ILE GLU THR SEQRES 26 A 427 LYS PHE ALA ASP LYS ASP LYS PHE GLU VAL THR GLU TRP SEQRES 27 A 427 ALA ALA GLN TYR GLY ILE PRO CYS GLY PRO VAL MET SER SEQRES 28 A 427 MET LYS GLU LEU ALA HIS ASP PRO SER LEU GLN LYS VAL SEQRES 29 A 427 GLY THR VAL VAL GLU VAL VAL ASP GLU ILE ARG GLY ASN SEQRES 30 A 427 HIS LEU THR VAL GLY ALA PRO PHE LYS PHE SER GLY PHE SEQRES 31 A 427 GLN PRO GLU ILE THR ARG ALA PRO LEU LEU GLY GLU HIS SEQRES 32 A 427 THR ASP GLU VAL LEU LYS GLU LEU GLY LEU ASP ASP ALA SEQRES 33 A 427 LYS ILE LYS GLU LEU HIS ALA LYS GLN VAL VAL SEQRES 1 B 427 THR LYS PRO LEU ASP GLY ILE ASN VAL LEU ASP PHE THR SEQRES 2 B 427 HIS VAL GLN ALA GLY PRO ALA CYS THR GLN MET MET GLY SEQRES 3 B 427 PHE LEU GLY ALA ASN VAL ILE LYS ILE GLU ARG ARG GLY SEQRES 4 B 427 SER GLY ASP MET THR ARG GLY TRP LEU GLN ASP LYS PRO SEQRES 5 B 427 ASN VAL ASP SER LEU TYR PHE THR MET PHE ASN CYS ASN SEQRES 6 B 427 LYS ARG SER ILE GLU LEU ASP MET LYS THR PRO GLU GLY SEQRES 7 B 427 LYS GLU LEU LEU GLU GLN MET ILE LYS LYS ALA ASP VAL SEQRES 8 B 427 MET VAL GLU ASN PHE GLY PRO GLY ALA LEU ASP ARG MET SEQRES 9 B 427 GLY PHE THR TRP GLU TYR ILE GLN GLU LEU ASN PRO ARG SEQRES 10 B 427 VAL ILE LEU ALA SER VAL LYS GLY TYR ALA GLU GLY HIS SEQRES 11 B 427 ALA ASN GLU HIS LEU LYS VAL TYR GLU ASN VAL ALA GLN SEQRES 12 B 427 CYS SER GLY GLY ALA ALA ALA THR THR GLY PHE TRP ASP SEQRES 13 B 427 GLY PRO PRO THR VAL SER GLY ALA ALA LEU GLY GLU SER SEQRES 14 B 427 ASN SER GLY MET HIS LEU MET ILE GLY ILE LEU ALA ALA SEQRES 15 B 427 LEU GLU ILE ARG HIS LYS THR GLY ARG GLY GLN LYS VAL SEQRES 16 B 427 ALA VAL ALA MET GLN ASP ALA VAL LEU ASN LEU VAL ARG SEQRES 17 B 427 ILE LYS LEU ARG ASP GLN GLN ARG LEU GLU ARG THR GLY SEQRES 18 B 427 ILE LEU ALA GLU TYR PRO GLN ALA GLN PRO ASN PHE ALA SEQRES 19 B 427 PHE ASP ARG ASP GLY ASN PRO LEU SER PHE ASP ASN ILE SEQRES 20 B 427 THR SER VAL PRO ARG GLY GLY ASN ALA GLY GLY GLY GLY SEQRES 21 B 427 GLN PRO GLY TRP MET LEU LYS CYS LYS GLY TRP GLU THR SEQRES 22 B 427 ASP ALA ASP SER TYR VAL TYR PHE THR ILE ALA ALA ASN SEQRES 23 B 427 MET TRP PRO GLN ILE CYS ASP MET ILE ASP LYS PRO GLU SEQRES 24 B 427 TRP LYS ASP ASP PRO ALA TYR ASN THR PHE GLU GLY ARG SEQRES 25 B 427 VAL ASP LYS LEU MET ASP ILE PHE SER PHE ILE GLU THR SEQRES 26 B 427 LYS PHE ALA ASP LYS ASP LYS PHE GLU VAL THR GLU TRP SEQRES 27 B 427 ALA ALA GLN TYR GLY ILE PRO CYS GLY PRO VAL MET SER SEQRES 28 B 427 MET LYS GLU LEU ALA HIS ASP PRO SER LEU GLN LYS VAL SEQRES 29 B 427 GLY THR VAL VAL GLU VAL VAL ASP GLU ILE ARG GLY ASN SEQRES 30 B 427 HIS LEU THR VAL GLY ALA PRO PHE LYS PHE SER GLY PHE SEQRES 31 B 427 GLN PRO GLU ILE THR ARG ALA PRO LEU LEU GLY GLU HIS SEQRES 32 B 427 THR ASP GLU VAL LEU LYS GLU LEU GLY LEU ASP ASP ALA SEQRES 33 B 427 LYS ILE LYS GLU LEU HIS ALA LYS GLN VAL VAL HET COA A 429 48 HET COA B1429 48 HETNAM COA COENZYME A FORMUL 3 COA 2(C21 H36 N7 O16 P3 S) FORMUL 5 HOH *453(H2 O) HELIX 1 1 GLN A 17 LEU A 29 1 13 HELIX 2 2 ASP A 43 TRP A 48 5 6 HELIX 3 3 SER A 57 CYS A 65 1 9 HELIX 4 4 THR A 76 LYS A 88 1 13 HELIX 5 5 GLY A 100 MET A 105 1 6 HELIX 6 6 THR A 108 ASN A 116 1 9 HELIX 7 7 TYR A 139 GLY A 147 1 9 HELIX 8 8 GLU A 169 GLY A 191 1 23 HELIX 9 9 MET A 200 VAL A 208 1 9 HELIX 10 10 VAL A 208 GLY A 222 1 15 HELIX 11 11 TYR A 227 GLN A 231 5 5 HELIX 12 12 SER A 244 ILE A 248 5 5 HELIX 13 13 ALA A 285 ASN A 287 5 3 HELIX 14 14 MET A 288 ILE A 296 1 9 HELIX 15 15 LYS A 298 LYS A 302 5 5 HELIX 16 16 THR A 309 VAL A 314 1 6 HELIX 17 17 LYS A 316 LYS A 327 1 12 HELIX 18 18 ASP A 332 TYR A 343 1 12 HELIX 19 19 SER A 352 ASP A 359 1 8 HELIX 20 20 ASP A 359 VAL A 365 1 7 HELIX 21 21 HIS A 404 GLY A 413 1 10 HELIX 22 22 ASP A 415 LYS A 425 1 11 HELIX 23 23 GLN B 17 LEU B 29 1 13 HELIX 24 24 SER B 57 MET B 62 1 6 HELIX 25 25 THR B 76 ALA B 90 1 15 HELIX 26 26 GLY B 100 MET B 105 1 6 HELIX 27 27 THR B 108 ASN B 116 1 9 HELIX 28 28 TYR B 139 GLY B 147 1 9 HELIX 29 29 ALA B 149 THR B 153 5 5 HELIX 30 30 GLU B 169 GLY B 191 1 23 HELIX 31 31 MET B 200 VAL B 208 1 9 HELIX 32 32 VAL B 208 GLY B 222 1 15 HELIX 33 33 TYR B 227 GLN B 231 5 5 HELIX 34 34 MET B 288 CYS B 293 1 6 HELIX 35 35 LYS B 298 LYS B 302 5 5 HELIX 36 36 ARG B 313 ASP B 315 5 3 HELIX 37 37 LYS B 316 PHE B 328 1 13 HELIX 38 38 ASP B 332 GLN B 342 1 11 HELIX 39 39 SER B 352 ASP B 359 1 8 HELIX 40 40 ASP B 359 VAL B 365 1 7 HELIX 41 41 HIS B 404 LEU B 412 1 9 HELIX 42 42 ASP B 415 LYS B 425 1 11 SHEET 1 A 7 ARG A 68 GLU A 71 0 SHEET 2 A 7 ASN A 32 GLU A 37 1 N LYS A 35 O ARG A 68 SHEET 3 A 7 ASN A 9 ASP A 12 1 N VAL A 10 O ASN A 32 SHEET 4 A 7 VAL A 92 GLU A 95 1 O VAL A 92 N LEU A 11 SHEET 5 A 7 ILE A 120 LYS A 125 1 O ILE A 120 N MET A 93 SHEET 6 A 7 LYS A 195 ALA A 199 1 O VAL A 196 N LEU A 121 SHEET 7 A 7 PHE B 386 PHE B 388 -1 O LYS B 387 N ALA A 197 SHEET 1 B 3 GLY A 264 LYS A 268 0 SHEET 2 B 3 TYR A 279 THR A 283 -1 O VAL A 280 N LEU A 267 SHEET 3 B 3 CYS A 347 PRO A 349 -1 O GLY A 348 N TYR A 281 SHEET 1 C 2 VAL A 368 VAL A 371 0 SHEET 2 C 2 HIS A 379 VAL A 382 -1 O HIS A 379 N VAL A 371 SHEET 1 D 7 PHE A 386 PHE A 388 0 SHEET 2 D 7 LYS B 195 ALA B 199 -1 O ALA B 197 N LYS A 387 SHEET 3 D 7 ILE B 120 LYS B 125 1 N LEU B 121 O VAL B 196 SHEET 4 D 7 VAL B 92 GLU B 95 1 N MET B 93 O ILE B 120 SHEET 5 D 7 ASN B 9 ASP B 12 1 N LEU B 11 O VAL B 92 SHEET 6 D 7 ASN B 32 GLU B 37 1 O ASN B 32 N VAL B 10 SHEET 7 D 7 ARG B 68 GLU B 71 1 O ARG B 68 N LYS B 35 SHEET 1 E 3 GLY B 264 LYS B 268 0 SHEET 2 E 3 TYR B 279 THR B 283 -1 O VAL B 280 N LEU B 267 SHEET 3 E 3 CYS B 347 PRO B 349 -1 O GLY B 348 N TYR B 281 SHEET 1 F 2 VAL B 368 VAL B 371 0 SHEET 2 F 2 HIS B 379 VAL B 382 -1 O HIS B 379 N VAL B 371 SITE 1 AC1 20 HIS A 15 VAL A 16 GLN A 17 ALA A 18 SITE 2 AC1 20 GLU A 37 ARG A 38 LEU A 72 ASN A 96 SITE 3 AC1 20 PHE A 97 GLY A 98 ALA A 101 ARG A 104 SITE 4 AC1 20 MET A 105 VAL A 124 LYS A 137 VAL A 138 SITE 5 AC1 20 TYR A 139 GLU A 169 MET A 200 ASN B 287 SITE 1 AC2 26 LYS A 52 HIS B 15 VAL B 16 GLN B 17 SITE 2 AC2 26 ALA B 18 ARG B 38 LEU B 72 MET B 74 SITE 3 AC2 26 LYS B 75 ASN B 96 PHE B 97 GLY B 98 SITE 4 AC2 26 ALA B 101 ARG B 104 MET B 105 LYS B 137 SITE 5 AC2 26 VAL B 138 GLU B 169 MET B 200 HOH B1537 SITE 6 AC2 26 HOH B1539 HOH B1550 HOH B1592 HOH B1595 SITE 7 AC2 26 HOH B1608 HOH B1609 CRYST1 150.042 150.042 99.645 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006665 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010036 0.00000