HEADER NUCLEAR PROTEIN 05-OCT-96 1VHI TITLE EPSTEIN BARR VIRUS NUCLEAR ANTIGEN-1 DNA-BINDING DOMAIN, RESIDUES 470- TITLE 2 607 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPSTEIN BARR VIRUS NUCLEAR ANTIGEN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA-BINDING AND DIMERIZATION DOMAIN RESIDUES 470 - 607; COMPND 5 SYNONYM: EBNA1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 4; SOURCE 3 ORGANISM_COMMON: EPSTEIN-BARR VIRUS; SOURCE 4 ORGANISM_TAXID: 10376; SOURCE 5 STRAIN: GD1; SOURCE 6 GENE: E2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS NUCLEAR PROTEIN, DNA-BINDING, ACTIVATOR, ORIGIN-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BOCHKAREV,J.BARWELL,R.PFUETZNER,W.FUREY,A.EDWARDS,L.FRAPPIER REVDAT 4 14-FEB-24 1VHI 1 SEQADV REVDAT 3 24-FEB-09 1VHI 1 VERSN REVDAT 2 01-APR-03 1VHI 1 JRNL REVDAT 1 23-DEC-96 1VHI 0 JRNL AUTH A.BOCHKAREV,J.A.BARWELL,R.A.PFUETZNER,W.FUREY JR., JRNL AUTH 2 A.M.EDWARDS,L.FRAPPIER JRNL TITL CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF THE JRNL TITL 2 EPSTEIN-BARR VIRUS ORIGIN-BINDING PROTEIN EBNA 1. JRNL REF CELL(CAMBRIDGE,MASS.) V. 83 39 1995 JRNL REFN ISSN 0092-8674 JRNL PMID 7553871 JRNL DOI 10.1016/0092-8674(95)90232-5 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.A.BARWELL,A.BOCHKAREV,R.A.PFUETZNER,H.TONG,D.S.YANG, REMARK 1 AUTH 2 L.FRAPPIER,A.M.EDWARDS REMARK 1 TITL OVEREXPRESSION, PURIFICATION, AND CRYSTALLIZATION OF THE DNA REMARK 1 TITL 2 BINDING AND DIMERIZATION DOMAINS OF THE EPSTEIN-BARR VIRUS REMARK 1 TITL 3 NUCLEAR ANTIGEN 1 REMARK 1 REF J.BIOL.CHEM. V. 270 20556 1995 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 9721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2071 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 3.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; 2.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; 3.000 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VHI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-94 REMARK 200 TEMPERATURE (KELVIN) : 297 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DOUBLE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10110 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: PHASES, X-PLOR 3.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOR DIFFUSION, 50 MM REMARK 280 MES PH 6.0 AND 100 MM NACL. SEE REFERENCE 1 FOR MORE DETAILS., REMARK 280 VAPOR DIFFUSION - HANGING DROP, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.99500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.12500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.12500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.99500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 466 REMARK 465 SER A 467 REMARK 465 HIS A 468 REMARK 465 GLY B 466 REMARK 465 SER B 467 REMARK 465 HIS B 468 REMARK 465 MET B 469 REMARK 465 GLY B 470 REMARK 465 GLN B 471 REMARK 465 GLY B 472 REMARK 465 GLY B 473 REMARK 465 SER B 474 REMARK 465 ASN B 475 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 518 HH11 ARG A 522 1.30 REMARK 500 HZ2 LYS B 477 H1 HOH B 23 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH22 ARG A 491 H ALA A 544 3544 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 493 NE2 HIS A 493 CD2 -0.069 REMARK 500 HIS B 569 CG HIS B 569 CD2 0.054 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 469 CG - SD - CE ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG A 496 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 496 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 TRP A 503 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 503 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 521 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 522 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 MET A 543 CA - CB - CG ANGL. DEV. = -10.7 DEGREES REMARK 500 MET A 543 CG - SD - CE ANGL. DEV. = -14.0 DEGREES REMARK 500 LEU A 566 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 THR A 585 N - CA - CB ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG A 594 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 594 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP A 605 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 605 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP B 503 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP B 503 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 THR B 515 N - CA - CB ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG B 522 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 532 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 555 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 CYS B 560 CA - CB - SG ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG B 594 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 594 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 493 60.24 -110.01 REMARK 500 PRO A 535 172.43 -45.76 REMARK 500 PRO B 535 166.86 -47.81 REMARK 500 PRO B 547 -146.73 -114.23 REMARK 500 PRO B 549 92.19 -61.49 REMARK 500 THR B 585 32.27 -88.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 594 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1VHI A 466 607 UNP P03211 EBN1_EBV 466 607 DBREF 1VHI B 466 607 UNP P03211 EBN1_EBV 466 607 SEQADV 1VHI SER A 467 UNP P03211 LYS 467 CONFLICT SEQADV 1VHI MET A 469 UNP P03211 ARG 469 CONFLICT SEQADV 1VHI SER B 467 UNP P03211 LYS 467 CONFLICT SEQADV 1VHI MET B 469 UNP P03211 ARG 469 CONFLICT SEQRES 1 A 142 GLY SER HIS MET GLY GLN GLY GLY SER ASN PRO LYS PHE SEQRES 2 A 142 GLU ASN ILE ALA GLU GLY LEU ARG ALA LEU LEU ALA ARG SEQRES 3 A 142 SER HIS VAL GLU ARG THR THR ASP GLU GLY THR TRP VAL SEQRES 4 A 142 ALA GLY VAL PHE VAL TYR GLY GLY SER LYS THR SER LEU SEQRES 5 A 142 TYR ASN LEU ARG ARG GLY THR ALA LEU ALA ILE PRO GLN SEQRES 6 A 142 CYS ARG LEU THR PRO LEU SER ARG LEU PRO PHE GLY MET SEQRES 7 A 142 ALA PRO GLY PRO GLY PRO GLN PRO GLY PRO LEU ARG GLU SEQRES 8 A 142 SER ILE VAL CYS TYR PHE MET VAL PHE LEU GLN THR HIS SEQRES 9 A 142 ILE PHE ALA GLU VAL LEU LYS ASP ALA ILE LYS ASP LEU SEQRES 10 A 142 VAL MET THR LYS PRO ALA PRO THR CYS ASN ILE ARG VAL SEQRES 11 A 142 THR VAL CYS SER PHE ASP ASP GLY VAL ASP LEU PRO SEQRES 1 B 142 GLY SER HIS MET GLY GLN GLY GLY SER ASN PRO LYS PHE SEQRES 2 B 142 GLU ASN ILE ALA GLU GLY LEU ARG ALA LEU LEU ALA ARG SEQRES 3 B 142 SER HIS VAL GLU ARG THR THR ASP GLU GLY THR TRP VAL SEQRES 4 B 142 ALA GLY VAL PHE VAL TYR GLY GLY SER LYS THR SER LEU SEQRES 5 B 142 TYR ASN LEU ARG ARG GLY THR ALA LEU ALA ILE PRO GLN SEQRES 6 B 142 CYS ARG LEU THR PRO LEU SER ARG LEU PRO PHE GLY MET SEQRES 7 B 142 ALA PRO GLY PRO GLY PRO GLN PRO GLY PRO LEU ARG GLU SEQRES 8 B 142 SER ILE VAL CYS TYR PHE MET VAL PHE LEU GLN THR HIS SEQRES 9 B 142 ILE PHE ALA GLU VAL LEU LYS ASP ALA ILE LYS ASP LEU SEQRES 10 B 142 VAL MET THR LYS PRO ALA PRO THR CYS ASN ILE ARG VAL SEQRES 11 B 142 THR VAL CYS SER PHE ASP ASP GLY VAL ASP LEU PRO FORMUL 3 HOH *71(H2 O) HELIX 1 1 LYS A 477 ARG A 491 1 15 HELIX 2 2 LYS A 514 ALA A 527 1 14 HELIX 3 3 GLY A 552 LEU A 554 5 3 HELIX 4 4 HIS A 569 THR A 585 1 17 HELIX 5 5 THR A 590 ASN A 592 5 3 HELIX 6 6 LYS B 477 ARG B 491 1 15 HELIX 7 7 LYS B 514 ALA B 527 1 14 HELIX 8 8 HIS B 569 THR B 585 1 17 HELIX 9 9 THR B 590 ASN B 592 5 3 SHEET 1 A 6 TYR A 561 LEU A 566 0 SHEET 2 A 6 ALA A 505 GLY A 511 -1 N VAL A 509 O PHE A 562 SHEET 3 A 6 ILE A 593 PHE A 600 -1 N CYS A 598 O GLY A 506 SHEET 4 A 6 ARG B 594 PHE B 600 -1 N SER B 599 O SER A 599 SHEET 5 A 6 ALA B 505 TYR B 510 -1 N TYR B 510 O ARG B 594 SHEET 6 A 6 TYR B 561 LEU B 566 -1 N LEU B 566 O ALA B 505 CISPEP 1 ALA A 588 PRO A 589 0 -1.11 CISPEP 2 ALA B 588 PRO B 589 0 5.81 CRYST1 59.990 69.080 70.250 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016669 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014235 0.00000