HEADER PLANT PROTEIN 24-FEB-04 1VJI TITLE GENE PRODUCT OF AT1G76680 FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 12-OXOPHYTODIENOATE REDUCTASE (OPR1); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT1G76680; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, ARABIDOPSIS THALIANA, CENTER FOR EUKARYOTIC KEYWDS 2 STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, CESG, PLANT KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.E.WESENBERG,D.W.SMITH,G.N.PHILLIPS JR.,K.A.JOHNSON,C.A.BINGMAN, AUTHOR 2 CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 8 27-DEC-23 1VJI 1 REMARK REVDAT 7 04-OCT-17 1VJI 1 REMARK REVDAT 6 06-APR-16 1VJI 1 JRNL VERSN REVDAT 5 24-FEB-09 1VJI 1 VERSN REVDAT 4 12-FEB-08 1VJI 1 REMARK REVDAT 3 01-FEB-05 1VJI 1 AUTHOR KEYWDS REMARK REVDAT 2 23-MAR-04 1VJI 1 REMARK REVDAT 1 16-MAR-04 1VJI 0 JRNL AUTH B.G.FOX,T.E.MALONE,K.A.JOHNSON,S.E.MADSON,D.ACETI, JRNL AUTH 2 C.A.BINGMAN,P.G.BLOMMEL,B.BUCHAN,B.BURNS,J.CAO, JRNL AUTH 3 C.C.CORNILESCU,J.DORELEIJERS,J.ELLEFSON,R.FREDERICK, JRNL AUTH 4 H.GEETHA,D.HRUBY,W.B.JEON,T.KIMBALL,J.KUNERT,J.L.MARKLEY, JRNL AUTH 5 C.NEWMAN,A.OLSON,F.C.PETERSON,G.N.PHILLIPS,J.PRIMM, JRNL AUTH 6 B.RAMIREZ,N.S.ROSENBERG,M.RUNNELS,K.SEDER,J.SHAW,D.W.SMITH, JRNL AUTH 7 H.SREENATH,J.SONG,M.R.SUSSMAN,S.THAO,D.TROESTLER,E.TYLER, JRNL AUTH 8 R.TYLER,E.ULRICH,D.VINAROV,F.VOJTIK,B.F.VOLKMAN,G.WESENBERG, JRNL AUTH 9 R.L.WROBEL,J.ZHANG,Q.ZHAO,Z.ZOLNAI JRNL TITL X-RAY STRUCTURE OF ARABIDOPSIS AT1G77680, JRNL TITL 2 12-OXOPHYTODIENOATE REDUCTASE ISOFORM 1. JRNL REF PROTEINS V. 61 206 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 16080145 JRNL DOI 10.1002/PROT.20533 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 19708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.159 REMARK 3 FREE R VALUE TEST SET COUNT : 1072 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1291 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71300 REMARK 3 B22 (A**2) : 1.89000 REMARK 3 B33 (A**2) : -1.17600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.781 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2855 ; 0.024 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3881 ; 1.894 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 7.111 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2227 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1433 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1945 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 139 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.224 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.205 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1745 ; 1.219 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2813 ; 1.966 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1110 ; 3.045 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1068 ; 4.218 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VJI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000001919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96400 REMARK 200 MONOCHROMATOR : DIAMOND (111) DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BENT CYLINDRICAL SI-MIRROR (RH REMARK 200 COATING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20816 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.87500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE CCP4 4.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: METHYL ETHER, POLYETHYLENE GLYCOL REMARK 280 5K,CALCIUM CHLORIDE, MES, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K, PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.66700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.66700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.34400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.03300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.34400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.03300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.66700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.34400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.03300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.66700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.34400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.03300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE AUTHORS ARE UNCERTAIN REMARK 300 OF THE BIOLOGICAL UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 GLY A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 GLN A 8 REMARK 465 LYS A 277 REMARK 465 THR A 278 REMARK 465 MET A 279 REMARK 465 GLY A 280 REMARK 465 GLU A 281 REMARK 465 VAL A 282 REMARK 465 HIS A 283 REMARK 465 ALA A 284 REMARK 465 CYS A 285 REMARK 465 PRO A 286 REMARK 465 SER A 370 REMARK 465 THR A 371 REMARK 465 ALA A 372 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 475 O HOH A 476 5445 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 143 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 230 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 241 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 247 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 321 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 327 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 334 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 364 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 36 19.13 -142.28 REMARK 500 TYR A 38 122.89 -39.11 REMARK 500 GLU A 63 152.95 -45.11 REMARK 500 ILE A 80 43.30 -140.59 REMARK 500 ASN A 140 98.69 -36.49 REMARK 500 ASP A 143 21.06 -71.55 REMARK 500 ASP A 203 -162.93 -112.44 REMARK 500 ALA A 274 -154.72 -61.66 REMARK 500 THR A 288 -75.35 -178.22 REMARK 500 ASP A 334 45.19 -103.28 REMARK 500 ASP A 342 56.13 38.81 REMARK 500 TYR A 362 -57.84 -127.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 373 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.3073 RELATED DB: TARGETDB DBREF 1VJI A 1 372 UNP Q8LAH7 OPR1_ARATH 1 372 SEQRES 1 A 372 MET GLU ASN GLY GLU ALA LYS GLN SER VAL PRO LEU LEU SEQRES 2 A 372 THR PRO TYR LYS MET GLY ARG PHE ASN LEU SER HIS ARG SEQRES 3 A 372 VAL VAL LEU ALA PRO LEU THR ARG GLN ARG SER TYR GLY SEQRES 4 A 372 ASN VAL PRO GLN PRO HIS ALA ALA ILE TYR TYR SER GLN SEQRES 5 A 372 ARG THR THR PRO GLY GLY PHE LEU ILE THR GLU ALA THR SEQRES 6 A 372 GLY VAL SER ASP THR ALA GLN GLY TYR GLN ASP THR PRO SEQRES 7 A 372 GLY ILE TRP THR LYS GLU HIS VAL GLU ALA TRP LYS PRO SEQRES 8 A 372 ILE VAL ASP ALA VAL HIS ALA LYS GLY GLY ILE PHE PHE SEQRES 9 A 372 CYS GLN ILE TRP HIS VAL GLY ARG VAL SER ASN SER GLY SEQRES 10 A 372 PHE GLN PRO ASN GLY LYS ALA PRO ILE SER CYS SER ASP SEQRES 11 A 372 LYS PRO LEU MET PRO GLN ILE ARG SER ASN GLY ILE ASP SEQRES 12 A 372 GLU ALA LEU PHE THR PRO PRO ARG ARG LEU GLY ILE GLU SEQRES 13 A 372 GLU ILE PRO GLY ILE VAL ASN ASP PHE ARG LEU ALA ALA SEQRES 14 A 372 ARG ASN ALA MET GLU ALA GLY PHE ASP GLY VAL GLU ILE SEQRES 15 A 372 HIS GLY ALA ASN GLY TYR LEU ILE ASP GLN PHE MET LYS SEQRES 16 A 372 ASP THR VAL ASN ASP ARG THR ASP GLU TYR GLY GLY SER SEQRES 17 A 372 LEU GLN ASN ARG CYS LYS PHE PRO LEU GLU ILE VAL ASP SEQRES 18 A 372 ALA VAL ALA LYS GLU ILE GLY PRO ASP ARG VAL GLY ILE SEQRES 19 A 372 ARG LEU SER PRO PHE ALA ASP TYR MET GLU SER GLY ASP SEQRES 20 A 372 THR ASN PRO GLY ALA LEU GLY LEU TYR MET ALA GLU SER SEQRES 21 A 372 LEU ASN LYS TYR GLY ILE LEU TYR CYS HIS VAL ILE GLU SEQRES 22 A 372 ALA ARG MET LYS THR MET GLY GLU VAL HIS ALA CYS PRO SEQRES 23 A 372 HIS THR LEU MET PRO MET ARG LYS ALA PHE LYS GLY THR SEQRES 24 A 372 PHE ILE SER ALA GLY GLY PHE THR ARG GLU ASP GLY ASN SEQRES 25 A 372 GLU ALA VAL SER LYS GLY ARG THR ASP LEU VAL ALA TYR SEQRES 26 A 372 GLY ARG TRP PHE LEU ALA ASN PRO ASP LEU PRO LYS ARG SEQRES 27 A 372 PHE GLN VAL ASP ALA PRO LEU ASN LYS TYR ASP ARG PRO SEQRES 28 A 372 THR PHE TYR THR SER ASP PRO VAL VAL GLY TYR THR ASP SEQRES 29 A 372 TYR PRO PHE LEU GLU SER THR ALA HET FMN A 373 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 HOH *107(H2 O) HELIX 1 1 VAL A 10 THR A 14 5 5 HELIX 2 2 SER A 37 VAL A 41 5 5 HELIX 3 3 GLN A 43 ARG A 53 1 11 HELIX 4 4 THR A 82 LYS A 99 1 18 HELIX 5 5 ASN A 115 LYS A 123 5 9 HELIX 6 6 GLY A 154 GLU A 157 5 4 HELIX 7 7 ILE A 158 GLY A 176 1 19 HELIX 8 8 TYR A 188 LYS A 195 1 8 HELIX 9 9 SER A 208 GLY A 228 1 21 HELIX 10 10 ASN A 249 LEU A 261 1 13 HELIX 11 11 THR A 288 PHE A 296 1 9 HELIX 12 12 THR A 307 LYS A 317 1 11 HELIX 13 13 GLY A 326 ASN A 332 1 7 HELIX 14 14 ASP A 334 ASP A 342 1 9 HELIX 15 15 ASP A 349 PHE A 353 5 5 SHEET 1 A 2 TYR A 16 MET A 18 0 SHEET 2 A 2 PHE A 21 LEU A 23 -1 O PHE A 21 N MET A 18 SHEET 1 B10 THR A 65 GLY A 66 0 SHEET 2 B10 ILE A 102 TRP A 108 1 O TRP A 108 N THR A 65 SHEET 3 B10 GLY A 179 GLY A 184 1 O HIS A 183 N ILE A 107 SHEET 4 B10 VAL A 232 LEU A 236 1 O GLY A 233 N ILE A 182 SHEET 5 B10 TYR A 268 ILE A 272 1 O HIS A 270 N ILE A 234 SHEET 6 B10 THR A 299 ALA A 303 1 O ILE A 301 N VAL A 271 SHEET 7 B10 LEU A 322 TYR A 325 1 O LEU A 322 N SER A 302 SHEET 8 B10 VAL A 27 LEU A 29 1 N VAL A 28 O TYR A 325 SHEET 9 B10 PHE A 59 ILE A 61 1 O PHE A 59 N LEU A 29 SHEET 10 B10 ILE A 102 TRP A 108 1 O ILE A 102 N LEU A 60 SHEET 1 C 2 ILE A 126 SER A 127 0 SHEET 2 C 2 ARG A 151 ARG A 152 1 O ARG A 151 N SER A 127 SITE 1 AC1 20 ALA A 30 PRO A 31 LEU A 32 THR A 33 SITE 2 AC1 20 ALA A 64 GLN A 106 HIS A 183 ASN A 186 SITE 3 AC1 20 ARG A 235 GLY A 304 GLY A 305 TYR A 325 SITE 4 AC1 20 GLY A 326 ARG A 327 PHE A 353 TYR A 354 SITE 5 AC1 20 HOH A 386 HOH A 387 HOH A 401 HOH A 433 CRYST1 46.688 88.066 149.334 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011400 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006700 0.00000