HEADER TRANSFERASE 16-MAR-04 1VJO TITLE CRYSTAL STRUCTURE OF ALANINE--GLYOXYLATE AMINOTRANSFERASE (ALR1004) TITLE 2 FROM NOSTOC SP. AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE--GLYOXYLATE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.6.1.44; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC SP.; SOURCE 3 ORGANISM_TAXID: 103690; SOURCE 4 STRAIN: PCC 7120; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS 17130350, ALR1004, ALANINE--GLYOXYLATE AMINOTRANSFERASE, STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PSI, PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 25-JAN-23 1VJO 1 REMARK SEQADV LINK REVDAT 7 13-JUL-11 1VJO 1 VERSN REVDAT 6 24-FEB-09 1VJO 1 VERSN REVDAT 5 20-SEP-05 1VJO 1 JRNL REVDAT 4 08-MAR-05 1VJO 1 AUTHOR JRNL REVDAT 3 01-FEB-05 1VJO 1 JRNL REVDAT 2 18-JAN-05 1VJO 1 AUTHOR KEYWDS REMARK REVDAT 1 23-MAR-04 1VJO 0 JRNL AUTH G.W.HAN,R.SCHWARZENBACHER,R.PAGE,L.JAROSZEWSKI,P.ABDUBEK, JRNL AUTH 2 E.AMBING,T.BIORAC,J.M.CANAVES,H.J.CHIU,X.DAI,A.M.DEACON, JRNL AUTH 3 M.DIDONATO,M.A.ELSLIGER,A.GODZIK,C.GRITTINI,S.K.GRZECHNIK, JRNL AUTH 4 J.HALE,E.HAMPTON,J.HAUGEN,M.HORNSBY,H.E.KLOCK,E.KOESEMA, JRNL AUTH 5 A.KREUSCH,P.KUHN,S.A.LESLEY,I.LEVIN,D.MCMULLAN, JRNL AUTH 6 T.M.MCPHILLIPS,M.D.MILLER,A.MORSE,K.MOY,E.NIGOGHOSSIAN, JRNL AUTH 7 J.OUYANG,J.PAULSEN,K.QUIJANO,R.REYES,E.SIMS,G.SPRAGGON, JRNL AUTH 8 R.C.STEVENS,H.VAN DEN BEDEM,J.VELASQUEZ,J.VINCENT, JRNL AUTH 9 F.VON DELFT,X.WANG,B.WEST,A.WHITE,G.WOLF,Q.XU,O.ZAGNITKO, JRNL AUTH10 K.O.HODGSON,J.WOOLEY,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF AN ALANINE-GLYOXYLATE AMINOTRANSFERASE JRNL TITL 2 FROM ANABAENA SP. AT 1.70 A RESOLUTION REVEALS A JRNL TITL 3 NONCOVALENTLY LINKED PLP COFACTOR JRNL REF PROTEINS V. 58 971 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 15657930 JRNL DOI 10.1002/PROT.20360 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 37725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2043 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2491 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2904 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 423 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.743 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2998 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4082 ; 1.591 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 375 ; 5.726 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;36.776 ;23.359 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;13.278 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;16.602 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2258 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1440 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 319 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 84 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 45 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1926 ; 1.077 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3016 ; 1.294 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1235 ; 2.606 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1066 ; 3.760 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 381 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0623 46.4533 25.2188 REMARK 3 T TENSOR REMARK 3 T11: -0.1132 T22: -0.1132 REMARK 3 T33: -0.1170 T12: -0.0252 REMARK 3 T13: 0.0064 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.9360 L22: 0.5168 REMARK 3 L33: 0.9419 L12: 0.0145 REMARK 3 L13: -0.5270 L23: 0.2503 REMARK 3 S TENSOR REMARK 3 S11: -0.0922 S12: 0.0606 S13: -0.0470 REMARK 3 S21: 0.0538 S22: -0.0051 S23: 0.0557 REMARK 3 S31: 0.1598 S32: -0.1787 S33: 0.0972 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. UNLIKE FOR PLP IN MANY PDB STRUCTURES, THE REMARK 3 DENSITY SHOWS CLEARLY THAT IT IS NOT COVALENTLY BOUND IN THIS REMARK 3 STRUCTURE. REMARK 4 REMARK 4 1VJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000001925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : BENT CYLINDRICAL GE(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BENT CONICAL SI-MIRROR (RH REMARK 200 COATING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42759 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 31.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.72200 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06M HEPES, 0.04M HEPES_NA, 12% PEG REMARK 280 MME 5000, 0.2M NP_CALCIUM CHLORIDE , VAPOR DIFFUSION,SITTING REMARK 280 DROP,NANODROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.62600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.62600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.62900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.52850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.62900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.52850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.62600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.62900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.52850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.62600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.62900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.52850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 79.25800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.62600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 405 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 439 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 ILE A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 234 CD NE CZ NH1 NH2 REMARK 470 GLU A 297 CD OE1 OE2 REMARK 470 LYS A 329 NZ REMARK 470 GLN A 378 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 452 O HOH A 712 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 774 O HOH A 774 3655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 360 SE MSE A 360 CE -0.479 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 18 127.07 -37.20 REMARK 500 ASN A 42 57.53 -91.34 REMARK 500 LYS A 209 -105.48 -117.11 REMARK 500 ALA A 238 46.50 -88.32 REMARK 500 ASN A 239 108.24 -164.88 REMARK 500 HIS A 258 -66.96 -123.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 354073 RELATED DB: TARGETDB DBREF 1VJO A 1 381 UNP Q8YY48 Q8YY48_ANASP 1 381 SEQADV 1VJO MET A -11 UNP Q8YY48 EXPRESSION TAG SEQADV 1VJO GLY A -10 UNP Q8YY48 EXPRESSION TAG SEQADV 1VJO SER A -9 UNP Q8YY48 EXPRESSION TAG SEQADV 1VJO ASP A -8 UNP Q8YY48 EXPRESSION TAG SEQADV 1VJO LYS A -7 UNP Q8YY48 EXPRESSION TAG SEQADV 1VJO ILE A -6 UNP Q8YY48 EXPRESSION TAG SEQADV 1VJO HIS A -5 UNP Q8YY48 EXPRESSION TAG SEQADV 1VJO HIS A -4 UNP Q8YY48 EXPRESSION TAG SEQADV 1VJO HIS A -3 UNP Q8YY48 EXPRESSION TAG SEQADV 1VJO HIS A -2 UNP Q8YY48 EXPRESSION TAG SEQADV 1VJO HIS A -1 UNP Q8YY48 EXPRESSION TAG SEQADV 1VJO HIS A 0 UNP Q8YY48 EXPRESSION TAG SEQADV 1VJO MSE A 1 UNP Q8YY48 MET 1 MODIFIED RESIDUE SEQADV 1VJO MSE A 41 UNP Q8YY48 MET 41 MODIFIED RESIDUE SEQADV 1VJO MSE A 57 UNP Q8YY48 MET 57 MODIFIED RESIDUE SEQADV 1VJO MSE A 86 UNP Q8YY48 MET 86 MODIFIED RESIDUE SEQADV 1VJO MSE A 115 UNP Q8YY48 MET 115 MODIFIED RESIDUE SEQADV 1VJO MSE A 222 UNP Q8YY48 MET 222 MODIFIED RESIDUE SEQADV 1VJO MSE A 244 UNP Q8YY48 MET 244 MODIFIED RESIDUE SEQADV 1VJO MSE A 360 UNP Q8YY48 MET 360 MODIFIED RESIDUE SEQRES 1 A 393 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 393 ALA GLN ILE ILE SER ILE ASN ASP ASN GLN ARG LEU GLN SEQRES 3 A 393 LEU GLU PRO LEU GLU VAL PRO SER ARG LEU LEU LEU GLY SEQRES 4 A 393 PRO GLY PRO SER ASN ALA HIS PRO SER VAL LEU GLN ALA SEQRES 5 A 393 MSE ASN VAL SER PRO VAL GLY HIS LEU ASP PRO ALA PHE SEQRES 6 A 393 LEU ALA LEU MSE ASP GLU ILE GLN SER LEU LEU ARG TYR SEQRES 7 A 393 VAL TRP GLN THR GLU ASN PRO LEU THR ILE ALA VAL SER SEQRES 8 A 393 GLY THR GLY THR ALA ALA MSE GLU ALA THR ILE ALA ASN SEQRES 9 A 393 ALA VAL GLU PRO GLY ASP VAL VAL LEU ILE GLY VAL ALA SEQRES 10 A 393 GLY TYR PHE GLY ASN ARG LEU VAL ASP MSE ALA GLY ARG SEQRES 11 A 393 TYR GLY ALA ASP VAL ARG THR ILE SER LYS PRO TRP GLY SEQRES 12 A 393 GLU VAL PHE SER LEU GLU GLU LEU ARG THR ALA LEU GLU SEQRES 13 A 393 THR HIS ARG PRO ALA ILE LEU ALA LEU VAL HIS ALA GLU SEQRES 14 A 393 THR SER THR GLY ALA ARG GLN PRO LEU GLU GLY VAL GLY SEQRES 15 A 393 GLU LEU CYS ARG GLU PHE GLY THR LEU LEU LEU VAL ASP SEQRES 16 A 393 THR VAL THR SER LEU GLY GLY VAL PRO ILE PHE LEU ASP SEQRES 17 A 393 ALA TRP GLY VAL ASP LEU ALA TYR SER CYS SER GLN LYS SEQRES 18 A 393 GLY LEU GLY CYS SER PRO GLY ALA SER PRO PHE THR MSE SEQRES 19 A 393 SER SER ARG ALA ILE GLU LYS LEU GLN ARG ARG ARG THR SEQRES 20 A 393 LYS VAL ALA ASN TRP TYR LEU ASP MSE ASN LEU LEU GLY SEQRES 21 A 393 LYS TYR TRP GLY SER GLU ARG VAL TYR HIS HIS THR ALA SEQRES 22 A 393 PRO ILE ASN LEU TYR TYR ALA LEU ARG GLU ALA LEU ARG SEQRES 23 A 393 LEU ILE ALA GLN GLU GLY LEU ALA ASN CYS TRP GLN ARG SEQRES 24 A 393 HIS GLN LYS ASN VAL GLU TYR LEU TRP GLU ARG LEU GLU SEQRES 25 A 393 ASP ILE GLY LEU SER LEU HIS VAL GLU LYS GLU TYR ARG SEQRES 26 A 393 LEU PRO THR LEU THR THR VAL CYS ILE PRO ASP GLY VAL SEQRES 27 A 393 ASP GLY LYS ALA VAL ALA ARG ARG LEU LEU ASN GLU HIS SEQRES 28 A 393 ASN ILE GLU VAL GLY GLY GLY LEU GLY GLU LEU ALA GLY SEQRES 29 A 393 LYS VAL TRP ARG VAL GLY LEU MSE GLY PHE ASN SER ARG SEQRES 30 A 393 LYS GLU SER VAL ASP GLN LEU ILE PRO ALA LEU GLU GLN SEQRES 31 A 393 VAL LEU ARG MODRES 1VJO MSE A 41 MET SELENOMETHIONINE MODRES 1VJO MSE A 57 MET SELENOMETHIONINE MODRES 1VJO MSE A 86 MET SELENOMETHIONINE MODRES 1VJO MSE A 115 MET SELENOMETHIONINE MODRES 1VJO MSE A 222 MET SELENOMETHIONINE MODRES 1VJO MSE A 244 MET SELENOMETHIONINE MODRES 1VJO MSE A 360 MET SELENOMETHIONINE HET MSE A 41 8 HET MSE A 57 8 HET MSE A 86 8 HET MSE A 115 8 HET MSE A 222 8 HET MSE A 244 8 HET MSE A 360 8 HET PLP A 400 16 HETNAM MSE SELENOMETHIONINE HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 HOH *423(H2 O) HELIX 1 1 HIS A 34 ASN A 42 1 9 HELIX 2 2 ASP A 50 GLN A 69 1 20 HELIX 3 3 THR A 81 VAL A 94 1 14 HELIX 4 4 GLY A 106 TYR A 119 1 14 HELIX 5 5 SER A 135 ARG A 147 1 13 HELIX 6 6 GLY A 168 GLY A 177 1 10 HELIX 7 7 SER A 223 ARG A 232 1 10 HELIX 8 8 ASP A 243 GLY A 252 1 10 HELIX 9 9 PRO A 262 GLY A 280 1 19 HELIX 10 10 GLY A 280 ILE A 302 1 23 HELIX 11 11 GLU A 309 ARG A 313 5 5 HELIX 12 12 ASP A 327 ASN A 340 1 14 HELIX 13 13 LEU A 347 ALA A 351 5 5 HELIX 14 14 MSE A 360 SER A 364 5 5 HELIX 15 15 ARG A 365 ARG A 381 1 17 SHEET 1 A 2 LEU A 24 LEU A 25 0 SHEET 2 A 2 ILE A 341 GLU A 342 1 O GLU A 342 N LEU A 24 SHEET 1 B 7 THR A 75 VAL A 78 0 SHEET 2 B 7 SER A 218 MSE A 222 -1 O SER A 218 N VAL A 78 SHEET 3 B 7 LEU A 202 TYR A 204 -1 N ALA A 203 O THR A 221 SHEET 4 B 7 LEU A 179 ASP A 183 1 N VAL A 182 O LEU A 202 SHEET 5 B 7 ILE A 150 VAL A 154 1 N LEU A 151 O LEU A 181 SHEET 6 B 7 VAL A 99 VAL A 104 1 N LEU A 101 O ALA A 152 SHEET 7 B 7 ASP A 122 SER A 127 1 O ILE A 126 N VAL A 104 SHEET 1 C 3 LEU A 317 CYS A 321 0 SHEET 2 C 3 VAL A 354 GLY A 358 -1 O VAL A 357 N THR A 318 SHEET 3 C 3 GLY A 344 GLY A 345 -1 N GLY A 344 O ARG A 356 LINK C ALA A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N ASN A 42 1555 1555 1.33 LINK C LEU A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N ASP A 58 1555 1555 1.34 LINK C ALA A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N GLU A 87 1555 1555 1.34 LINK C ASP A 114 N MSE A 115 1555 1555 1.33 LINK C MSE A 115 N ALA A 116 1555 1555 1.33 LINK C THR A 221 N MSE A 222 1555 1555 1.34 LINK C MSE A 222 N SER A 223 1555 1555 1.33 LINK C ASP A 243 N MSE A 244 1555 1555 1.33 LINK C MSE A 244 N ASN A 245 1555 1555 1.33 LINK C LEU A 359 N MSE A 360 1555 1555 1.32 LINK C MSE A 360 N GLY A 361 1555 1555 1.33 CISPEP 1 GLY A 29 PRO A 30 0 -0.91 SITE 1 AC1 16 THR A 81 GLY A 82 THR A 83 PHE A 108 SITE 2 AC1 16 ALA A 156 THR A 158 ASP A 183 VAL A 185 SITE 3 AC1 16 THR A 186 GLN A 208 LYS A 209 TYR A 257 SITE 4 AC1 16 HIS A 259 THR A 260 HOH A 427 HOH A 590 CRYST1 79.258 101.057 97.252 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012617 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010283 0.00000