data_1VK2 # _entry.id 1VK2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VK2 pdb_00001vk2 10.2210/pdb1vk2/pdb RCSB RCSB001937 ? ? WWPDB D_1000001937 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-05-04 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-01-25 5 'Structure model' 1 4 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_conn_type 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' pdbx_entry_details 10 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.value' 9 4 'Structure model' '_struct_conn.conn_type_id' 10 4 'Structure model' '_struct_conn.id' 11 4 'Structure model' '_struct_conn.pdbx_dist_value' 12 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 25 4 'Structure model' '_struct_conn_type.id' 26 4 'Structure model' '_struct_ref_seq_dif.details' 27 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 1VK2 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2004-04-16 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 282384 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Uracil-DNA glycosylase (TM0511) from Thermotoga maritima at 1.90 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uracil-DNA glycosylase TM0511' 23135.275 1 3.2.2.- ? ? ? 2 non-polymer syn 'IRON/SULFUR CLUSTER' 351.640 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 4 water nat water 18.015 114 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MGSDKIHHHHHH(MSE)YTREEL(MSE)EIVSERVKKCTACPLHLNRTNVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFV GRAG(MSE)LLTELLRESGIRREDVYICNVVKCRPPNNRTPTPEEQAACGHFLLAQIEIINPDVIVALGATALSFFVDGK KVSITKVRGNPIDWLGGKKVIPTFHPSYLLRNRSNELRRIVLEDIEKAKSFIKKEG ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMYTREELMEIVSERVKKCTACPLHLNRTNVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFVGRAGMLLT ELLRESGIRREDVYICNVVKCRPPNNRTPTPEEQAACGHFLLAQIEIINPDVIVALGATALSFFVDGKKVSITKVRGNPI DWLGGKKVIPTFHPSYLLRNRSNELRRIVLEDIEKAKSFIKKEG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 282384 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IRON/SULFUR CLUSTER' SF4 3 'UNKNOWN LIGAND' UNL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 TYR n 1 15 THR n 1 16 ARG n 1 17 GLU n 1 18 GLU n 1 19 LEU n 1 20 MSE n 1 21 GLU n 1 22 ILE n 1 23 VAL n 1 24 SER n 1 25 GLU n 1 26 ARG n 1 27 VAL n 1 28 LYS n 1 29 LYS n 1 30 CYS n 1 31 THR n 1 32 ALA n 1 33 CYS n 1 34 PRO n 1 35 LEU n 1 36 HIS n 1 37 LEU n 1 38 ASN n 1 39 ARG n 1 40 THR n 1 41 ASN n 1 42 VAL n 1 43 VAL n 1 44 VAL n 1 45 GLY n 1 46 GLU n 1 47 GLY n 1 48 ASN n 1 49 LEU n 1 50 ASP n 1 51 THR n 1 52 ARG n 1 53 ILE n 1 54 VAL n 1 55 PHE n 1 56 VAL n 1 57 GLY n 1 58 GLU n 1 59 GLY n 1 60 PRO n 1 61 GLY n 1 62 GLU n 1 63 GLU n 1 64 GLU n 1 65 ASP n 1 66 LYS n 1 67 THR n 1 68 GLY n 1 69 ARG n 1 70 PRO n 1 71 PHE n 1 72 VAL n 1 73 GLY n 1 74 ARG n 1 75 ALA n 1 76 GLY n 1 77 MSE n 1 78 LEU n 1 79 LEU n 1 80 THR n 1 81 GLU n 1 82 LEU n 1 83 LEU n 1 84 ARG n 1 85 GLU n 1 86 SER n 1 87 GLY n 1 88 ILE n 1 89 ARG n 1 90 ARG n 1 91 GLU n 1 92 ASP n 1 93 VAL n 1 94 TYR n 1 95 ILE n 1 96 CYS n 1 97 ASN n 1 98 VAL n 1 99 VAL n 1 100 LYS n 1 101 CYS n 1 102 ARG n 1 103 PRO n 1 104 PRO n 1 105 ASN n 1 106 ASN n 1 107 ARG n 1 108 THR n 1 109 PRO n 1 110 THR n 1 111 PRO n 1 112 GLU n 1 113 GLU n 1 114 GLN n 1 115 ALA n 1 116 ALA n 1 117 CYS n 1 118 GLY n 1 119 HIS n 1 120 PHE n 1 121 LEU n 1 122 LEU n 1 123 ALA n 1 124 GLN n 1 125 ILE n 1 126 GLU n 1 127 ILE n 1 128 ILE n 1 129 ASN n 1 130 PRO n 1 131 ASP n 1 132 VAL n 1 133 ILE n 1 134 VAL n 1 135 ALA n 1 136 LEU n 1 137 GLY n 1 138 ALA n 1 139 THR n 1 140 ALA n 1 141 LEU n 1 142 SER n 1 143 PHE n 1 144 PHE n 1 145 VAL n 1 146 ASP n 1 147 GLY n 1 148 LYS n 1 149 LYS n 1 150 VAL n 1 151 SER n 1 152 ILE n 1 153 THR n 1 154 LYS n 1 155 VAL n 1 156 ARG n 1 157 GLY n 1 158 ASN n 1 159 PRO n 1 160 ILE n 1 161 ASP n 1 162 TRP n 1 163 LEU n 1 164 GLY n 1 165 GLY n 1 166 LYS n 1 167 LYS n 1 168 VAL n 1 169 ILE n 1 170 PRO n 1 171 THR n 1 172 PHE n 1 173 HIS n 1 174 PRO n 1 175 SER n 1 176 TYR n 1 177 LEU n 1 178 LEU n 1 179 ARG n 1 180 ASN n 1 181 ARG n 1 182 SER n 1 183 ASN n 1 184 GLU n 1 185 LEU n 1 186 ARG n 1 187 ARG n 1 188 ILE n 1 189 VAL n 1 190 LEU n 1 191 GLU n 1 192 ASP n 1 193 ILE n 1 194 GLU n 1 195 LYS n 1 196 ALA n 1 197 LYS n 1 198 SER n 1 199 PHE n 1 200 ILE n 1 201 LYS n 1 202 LYS n 1 203 GLU n 1 204 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene TM0511 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SF4 non-polymer . 'IRON/SULFUR CLUSTER' ? 'Fe4 S4' 351.640 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 ? ? ? A . n A 1 11 HIS 11 -1 ? ? ? A . n A 1 12 HIS 12 0 ? ? ? A . n A 1 13 MSE 13 1 1 MSE MSE A . n A 1 14 TYR 14 2 2 TYR TYR A . n A 1 15 THR 15 3 3 THR THR A . n A 1 16 ARG 16 4 4 ARG ARG A . n A 1 17 GLU 17 5 5 GLU GLU A . n A 1 18 GLU 18 6 6 GLU GLU A . n A 1 19 LEU 19 7 7 LEU LEU A . n A 1 20 MSE 20 8 8 MSE MSE A . n A 1 21 GLU 21 9 9 GLU GLU A . n A 1 22 ILE 22 10 10 ILE ILE A . n A 1 23 VAL 23 11 11 VAL VAL A . n A 1 24 SER 24 12 12 SER SER A . n A 1 25 GLU 25 13 13 GLU GLU A . n A 1 26 ARG 26 14 14 ARG ARG A . n A 1 27 VAL 27 15 15 VAL VAL A . n A 1 28 LYS 28 16 16 LYS LYS A . n A 1 29 LYS 29 17 17 LYS LYS A . n A 1 30 CYS 30 18 18 CYS CYS A . n A 1 31 THR 31 19 19 THR THR A . n A 1 32 ALA 32 20 20 ALA ALA A . n A 1 33 CYS 33 21 21 CYS CYS A . n A 1 34 PRO 34 22 22 PRO PRO A . n A 1 35 LEU 35 23 23 LEU LEU A . n A 1 36 HIS 36 24 24 HIS HIS A . n A 1 37 LEU 37 25 25 LEU LEU A . n A 1 38 ASN 38 26 26 ASN ASN A . n A 1 39 ARG 39 27 27 ARG ARG A . n A 1 40 THR 40 28 28 THR THR A . n A 1 41 ASN 41 29 29 ASN ASN A . n A 1 42 VAL 42 30 30 VAL VAL A . n A 1 43 VAL 43 31 31 VAL VAL A . n A 1 44 VAL 44 32 32 VAL VAL A . n A 1 45 GLY 45 33 33 GLY GLY A . n A 1 46 GLU 46 34 34 GLU GLU A . n A 1 47 GLY 47 35 35 GLY GLY A . n A 1 48 ASN 48 36 36 ASN ASN A . n A 1 49 LEU 49 37 37 LEU LEU A . n A 1 50 ASP 50 38 38 ASP ASP A . n A 1 51 THR 51 39 39 THR THR A . n A 1 52 ARG 52 40 40 ARG ARG A . n A 1 53 ILE 53 41 41 ILE ILE A . n A 1 54 VAL 54 42 42 VAL VAL A . n A 1 55 PHE 55 43 43 PHE PHE A . n A 1 56 VAL 56 44 44 VAL VAL A . n A 1 57 GLY 57 45 45 GLY GLY A . n A 1 58 GLU 58 46 46 GLU GLU A . n A 1 59 GLY 59 47 47 GLY GLY A . n A 1 60 PRO 60 48 48 PRO PRO A . n A 1 61 GLY 61 49 49 GLY GLY A . n A 1 62 GLU 62 50 50 GLU GLU A . n A 1 63 GLU 63 51 51 GLU GLU A . n A 1 64 GLU 64 52 52 GLU GLU A . n A 1 65 ASP 65 53 53 ASP ASP A . n A 1 66 LYS 66 54 54 LYS LYS A . n A 1 67 THR 67 55 55 THR THR A . n A 1 68 GLY 68 56 56 GLY GLY A . n A 1 69 ARG 69 57 57 ARG ARG A . n A 1 70 PRO 70 58 58 PRO PRO A . n A 1 71 PHE 71 59 59 PHE PHE A . n A 1 72 VAL 72 60 60 VAL VAL A . n A 1 73 GLY 73 61 61 GLY GLY A . n A 1 74 ARG 74 62 62 ARG ARG A . n A 1 75 ALA 75 63 63 ALA ALA A . n A 1 76 GLY 76 64 64 GLY GLY A . n A 1 77 MSE 77 65 65 MSE MSE A . n A 1 78 LEU 78 66 66 LEU LEU A . n A 1 79 LEU 79 67 67 LEU LEU A . n A 1 80 THR 80 68 68 THR THR A . n A 1 81 GLU 81 69 69 GLU GLU A . n A 1 82 LEU 82 70 70 LEU LEU A . n A 1 83 LEU 83 71 71 LEU LEU A . n A 1 84 ARG 84 72 72 ARG ARG A . n A 1 85 GLU 85 73 73 GLU GLU A . n A 1 86 SER 86 74 74 SER SER A . n A 1 87 GLY 87 75 75 GLY GLY A . n A 1 88 ILE 88 76 76 ILE ILE A . n A 1 89 ARG 89 77 77 ARG ARG A . n A 1 90 ARG 90 78 78 ARG ARG A . n A 1 91 GLU 91 79 79 GLU GLU A . n A 1 92 ASP 92 80 80 ASP ASP A . n A 1 93 VAL 93 81 81 VAL VAL A . n A 1 94 TYR 94 82 82 TYR TYR A . n A 1 95 ILE 95 83 83 ILE ILE A . n A 1 96 CYS 96 84 84 CYS CYS A . n A 1 97 ASN 97 85 85 ASN ASN A . n A 1 98 VAL 98 86 86 VAL VAL A . n A 1 99 VAL 99 87 87 VAL VAL A . n A 1 100 LYS 100 88 88 LYS LYS A . n A 1 101 CYS 101 89 89 CYS CYS A . n A 1 102 ARG 102 90 90 ARG ARG A . n A 1 103 PRO 103 91 91 PRO PRO A . n A 1 104 PRO 104 92 92 PRO PRO A . n A 1 105 ASN 105 93 93 ASN ASN A . n A 1 106 ASN 106 94 94 ASN ASN A . n A 1 107 ARG 107 95 95 ARG ARG A . n A 1 108 THR 108 96 96 THR THR A . n A 1 109 PRO 109 97 97 PRO PRO A . n A 1 110 THR 110 98 98 THR THR A . n A 1 111 PRO 111 99 99 PRO PRO A . n A 1 112 GLU 112 100 100 GLU GLU A . n A 1 113 GLU 113 101 101 GLU GLU A . n A 1 114 GLN 114 102 102 GLN GLN A . n A 1 115 ALA 115 103 103 ALA ALA A . n A 1 116 ALA 116 104 104 ALA ALA A . n A 1 117 CYS 117 105 105 CYS CYS A . n A 1 118 GLY 118 106 106 GLY GLY A . n A 1 119 HIS 119 107 107 HIS HIS A . n A 1 120 PHE 120 108 108 PHE PHE A . n A 1 121 LEU 121 109 109 LEU LEU A . n A 1 122 LEU 122 110 110 LEU LEU A . n A 1 123 ALA 123 111 111 ALA ALA A . n A 1 124 GLN 124 112 112 GLN GLN A . n A 1 125 ILE 125 113 113 ILE ILE A . n A 1 126 GLU 126 114 114 GLU GLU A . n A 1 127 ILE 127 115 115 ILE ILE A . n A 1 128 ILE 128 116 116 ILE ILE A . n A 1 129 ASN 129 117 117 ASN ASN A . n A 1 130 PRO 130 118 118 PRO PRO A . n A 1 131 ASP 131 119 119 ASP ASP A . n A 1 132 VAL 132 120 120 VAL VAL A . n A 1 133 ILE 133 121 121 ILE ILE A . n A 1 134 VAL 134 122 122 VAL VAL A . n A 1 135 ALA 135 123 123 ALA ALA A . n A 1 136 LEU 136 124 124 LEU LEU A . n A 1 137 GLY 137 125 125 GLY GLY A . n A 1 138 ALA 138 126 126 ALA ALA A . n A 1 139 THR 139 127 127 THR THR A . n A 1 140 ALA 140 128 128 ALA ALA A . n A 1 141 LEU 141 129 129 LEU LEU A . n A 1 142 SER 142 130 130 SER SER A . n A 1 143 PHE 143 131 131 PHE PHE A . n A 1 144 PHE 144 132 132 PHE PHE A . n A 1 145 VAL 145 133 133 VAL VAL A . n A 1 146 ASP 146 134 134 ASP ASP A . n A 1 147 GLY 147 135 135 GLY GLY A . n A 1 148 LYS 148 136 136 LYS LYS A . n A 1 149 LYS 149 137 137 LYS LYS A . n A 1 150 VAL 150 138 138 VAL VAL A . n A 1 151 SER 151 139 139 SER SER A . n A 1 152 ILE 152 140 140 ILE ILE A . n A 1 153 THR 153 141 141 THR THR A . n A 1 154 LYS 154 142 142 LYS LYS A . n A 1 155 VAL 155 143 143 VAL VAL A . n A 1 156 ARG 156 144 144 ARG ARG A . n A 1 157 GLY 157 145 145 GLY GLY A . n A 1 158 ASN 158 146 146 ASN ASN A . n A 1 159 PRO 159 147 147 PRO PRO A . n A 1 160 ILE 160 148 148 ILE ILE A . n A 1 161 ASP 161 149 149 ASP ASP A . n A 1 162 TRP 162 150 150 TRP TRP A . n A 1 163 LEU 163 151 151 LEU LEU A . n A 1 164 GLY 164 152 152 GLY GLY A . n A 1 165 GLY 165 153 153 GLY GLY A . n A 1 166 LYS 166 154 154 LYS LYS A . n A 1 167 LYS 167 155 155 LYS LYS A . n A 1 168 VAL 168 156 156 VAL VAL A . n A 1 169 ILE 169 157 157 ILE ILE A . n A 1 170 PRO 170 158 158 PRO PRO A . n A 1 171 THR 171 159 159 THR THR A . n A 1 172 PHE 172 160 160 PHE PHE A . n A 1 173 HIS 173 161 161 HIS HIS A . n A 1 174 PRO 174 162 162 PRO PRO A . n A 1 175 SER 175 163 163 SER SER A . n A 1 176 TYR 176 164 164 TYR TYR A . n A 1 177 LEU 177 165 165 LEU LEU A . n A 1 178 LEU 178 166 166 LEU LEU A . n A 1 179 ARG 179 167 167 ARG ARG A . n A 1 180 ASN 180 168 168 ASN ASN A . n A 1 181 ARG 181 169 169 ARG ARG A . n A 1 182 SER 182 170 170 SER SER A . n A 1 183 ASN 183 171 171 ASN ASN A . n A 1 184 GLU 184 172 172 GLU GLU A . n A 1 185 LEU 185 173 173 LEU LEU A . n A 1 186 ARG 186 174 174 ARG ARG A . n A 1 187 ARG 187 175 175 ARG ARG A . n A 1 188 ILE 188 176 176 ILE ILE A . n A 1 189 VAL 189 177 177 VAL VAL A . n A 1 190 LEU 190 178 178 LEU LEU A . n A 1 191 GLU 191 179 179 GLU GLU A . n A 1 192 ASP 192 180 180 ASP ASP A . n A 1 193 ILE 193 181 181 ILE ILE A . n A 1 194 GLU 194 182 182 GLU GLU A . n A 1 195 LYS 195 183 183 LYS LYS A . n A 1 196 ALA 196 184 184 ALA ALA A . n A 1 197 LYS 197 185 185 LYS LYS A . n A 1 198 SER 198 186 186 SER SER A . n A 1 199 PHE 199 187 187 PHE PHE A . n A 1 200 ILE 200 188 188 ILE ILE A . n A 1 201 LYS 201 189 189 LYS LYS A . n A 1 202 LYS 202 190 190 LYS LYS A . n A 1 203 GLU 203 191 191 GLU GLU A . n A 1 204 GLY 204 192 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 1 201 201 SF4 FS4 A . C 3 UNL 1 301 301 UNL UNL A . D 4 HOH 1 302 1 HOH HOH A . D 4 HOH 2 303 2 HOH HOH A . D 4 HOH 3 304 3 HOH HOH A . D 4 HOH 4 305 4 HOH HOH A . D 4 HOH 5 306 5 HOH HOH A . D 4 HOH 6 307 6 HOH HOH A . D 4 HOH 7 308 7 HOH HOH A . D 4 HOH 8 309 8 HOH HOH A . D 4 HOH 9 310 9 HOH HOH A . D 4 HOH 10 311 10 HOH HOH A . D 4 HOH 11 312 11 HOH HOH A . D 4 HOH 12 313 12 HOH HOH A . D 4 HOH 13 314 13 HOH HOH A . D 4 HOH 14 315 14 HOH HOH A . D 4 HOH 15 316 15 HOH HOH A . D 4 HOH 16 317 16 HOH HOH A . D 4 HOH 17 318 17 HOH HOH A . D 4 HOH 18 319 18 HOH HOH A . D 4 HOH 19 320 19 HOH HOH A . D 4 HOH 20 321 20 HOH HOH A . D 4 HOH 21 322 21 HOH HOH A . D 4 HOH 22 323 22 HOH HOH A . D 4 HOH 23 324 23 HOH HOH A . D 4 HOH 24 325 24 HOH HOH A . D 4 HOH 25 326 25 HOH HOH A . D 4 HOH 26 327 26 HOH HOH A . D 4 HOH 27 328 27 HOH HOH A . D 4 HOH 28 329 28 HOH HOH A . D 4 HOH 29 330 29 HOH HOH A . D 4 HOH 30 331 30 HOH HOH A . D 4 HOH 31 332 31 HOH HOH A . D 4 HOH 32 333 32 HOH HOH A . D 4 HOH 33 334 33 HOH HOH A . D 4 HOH 34 335 34 HOH HOH A . D 4 HOH 35 336 35 HOH HOH A . D 4 HOH 36 337 36 HOH HOH A . D 4 HOH 37 338 37 HOH HOH A . D 4 HOH 38 339 38 HOH HOH A . D 4 HOH 39 340 39 HOH HOH A . D 4 HOH 40 341 40 HOH HOH A . D 4 HOH 41 342 41 HOH HOH A . D 4 HOH 42 343 42 HOH HOH A . D 4 HOH 43 344 43 HOH HOH A . D 4 HOH 44 345 44 HOH HOH A . D 4 HOH 45 346 45 HOH HOH A . D 4 HOH 46 347 46 HOH HOH A . D 4 HOH 47 348 47 HOH HOH A . D 4 HOH 48 349 48 HOH HOH A . D 4 HOH 49 350 49 HOH HOH A . D 4 HOH 50 351 50 HOH HOH A . D 4 HOH 51 352 51 HOH HOH A . D 4 HOH 52 353 52 HOH HOH A . D 4 HOH 53 354 53 HOH HOH A . D 4 HOH 54 355 54 HOH HOH A . D 4 HOH 55 356 55 HOH HOH A . D 4 HOH 56 357 56 HOH HOH A . D 4 HOH 57 358 57 HOH HOH A . D 4 HOH 58 359 58 HOH HOH A . D 4 HOH 59 360 59 HOH HOH A . D 4 HOH 60 361 60 HOH HOH A . D 4 HOH 61 362 61 HOH HOH A . D 4 HOH 62 363 62 HOH HOH A . D 4 HOH 63 364 63 HOH HOH A . D 4 HOH 64 365 64 HOH HOH A . D 4 HOH 65 366 65 HOH HOH A . D 4 HOH 66 367 66 HOH HOH A . D 4 HOH 67 368 67 HOH HOH A . D 4 HOH 68 369 68 HOH HOH A . D 4 HOH 69 370 69 HOH HOH A . D 4 HOH 70 371 70 HOH HOH A . D 4 HOH 71 372 71 HOH HOH A . D 4 HOH 72 373 72 HOH HOH A . D 4 HOH 73 374 73 HOH HOH A . D 4 HOH 74 375 74 HOH HOH A . D 4 HOH 75 376 75 HOH HOH A . D 4 HOH 76 377 76 HOH HOH A . D 4 HOH 77 378 77 HOH HOH A . D 4 HOH 78 379 78 HOH HOH A . D 4 HOH 79 380 79 HOH HOH A . D 4 HOH 80 381 80 HOH HOH A . D 4 HOH 81 382 81 HOH HOH A . D 4 HOH 82 383 82 HOH HOH A . D 4 HOH 83 384 83 HOH HOH A . D 4 HOH 84 385 84 HOH HOH A . D 4 HOH 85 386 85 HOH HOH A . D 4 HOH 86 387 86 HOH HOH A . D 4 HOH 87 388 87 HOH HOH A . D 4 HOH 88 389 88 HOH HOH A . D 4 HOH 89 390 89 HOH HOH A . D 4 HOH 90 391 90 HOH HOH A . D 4 HOH 91 392 91 HOH HOH A . D 4 HOH 92 393 92 HOH HOH A . D 4 HOH 93 394 93 HOH HOH A . D 4 HOH 94 395 94 HOH HOH A . D 4 HOH 95 396 95 HOH HOH A . D 4 HOH 96 397 96 HOH HOH A . D 4 HOH 97 398 97 HOH HOH A . D 4 HOH 98 399 98 HOH HOH A . D 4 HOH 99 400 99 HOH HOH A . D 4 HOH 100 401 100 HOH HOH A . D 4 HOH 101 402 101 HOH HOH A . D 4 HOH 102 403 102 HOH HOH A . D 4 HOH 103 404 103 HOH HOH A . D 4 HOH 104 405 104 HOH HOH A . D 4 HOH 105 406 105 HOH HOH A . D 4 HOH 106 407 106 HOH HOH A . D 4 HOH 107 408 107 HOH HOH A . D 4 HOH 108 409 108 HOH HOH A . D 4 HOH 109 410 109 HOH HOH A . D 4 HOH 110 411 110 HOH HOH A . D 4 HOH 111 412 111 HOH HOH A . D 4 HOH 112 413 112 HOH HOH A . D 4 HOH 113 414 113 HOH HOH A . D 4 HOH 114 415 114 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 17 ? CE ? A LYS 29 CE 2 1 Y 1 A LYS 17 ? NZ ? A LYS 29 NZ 3 1 Y 1 A LYS 54 ? CD ? A LYS 66 CD 4 1 Y 1 A LYS 54 ? CE ? A LYS 66 CE 5 1 Y 1 A LYS 54 ? NZ ? A LYS 66 NZ 6 1 Y 1 A MSE 65 ? CE ? A MSE 77 CE 7 1 Y 1 A LYS 137 ? CG ? A LYS 149 CG 8 1 Y 1 A LYS 137 ? CD ? A LYS 149 CD 9 1 Y 1 A LYS 137 ? CE ? A LYS 149 CE 10 1 Y 1 A LYS 137 ? NZ ? A LYS 149 NZ 11 1 Y 1 A LYS 142 ? CD ? A LYS 154 CD 12 1 Y 1 A LYS 142 ? CE ? A LYS 154 CE 13 1 Y 1 A LYS 142 ? NZ ? A LYS 154 NZ 14 1 Y 1 A LYS 190 ? CG ? A LYS 202 CG 15 1 Y 1 A LYS 190 ? CD ? A LYS 202 CD 16 1 Y 1 A LYS 190 ? CE ? A LYS 202 CE 17 1 Y 1 A LYS 190 ? NZ ? A LYS 202 NZ 18 1 Y 1 A GLU 191 ? CA ? A GLU 203 CA 19 1 Y 1 A GLU 191 ? C ? A GLU 203 C 20 1 Y 1 A GLU 191 ? O ? A GLU 203 O 21 1 Y 1 A GLU 191 ? CB ? A GLU 203 CB 22 1 Y 1 A GLU 191 ? CG ? A GLU 203 CG 23 1 Y 1 A GLU 191 ? CD ? A GLU 203 CD 24 1 Y 1 A GLU 191 ? OE1 ? A GLU 203 OE1 25 1 Y 1 A GLU 191 ? OE2 ? A GLU 203 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SHARP phasing . ? 3 autoSHARP phasing . ? 4 REFMAC refinement 5.1.24 ? 5 # _cell.length_a 61.049 _cell.length_b 61.049 _cell.length_c 127.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 1VK2 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.entry_id 1VK2 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 96 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1VK2 # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 53.13 _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'TRIS pH 8.5, 8% PEG-8000, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K. cryo condition: 25% PEG-200.' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2004-03-03 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0000 1.0 2 0.9796 1.0 3 0.9794 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_wavelength_list '1.0000, 0.9796, 0.9794' _diffrn_source.pdbx_wavelength ? # _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 50.00 _reflns.number_obs 19816 _reflns.percent_possible_obs 99.97 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 25.15 _reflns.B_iso_Wilson_estimate 37.82 _reflns.pdbx_redundancy 7.87 _reflns.pdbx_Rsym_value 0.068 _reflns.entry_id 1VK2 _reflns.number_all ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 99.95 _reflns_shell.pdbx_Rsym_value 0.841 _reflns_shell.pdbx_redundancy 6.13 _reflns_shell.number_unique_all 1938 _reflns_shell.meanI_over_sigI_obs 2.03 _reflns_shell.Rmerge_I_obs ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 1.90 _refine.ls_d_res_low 44.09 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_obs 18702 _refine.ls_number_reflns_R_free 1013 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_percent_reflns_obs 99.96 _refine.ls_R_factor_obs 0.17886 _refine.ls_R_factor_R_work 0.17743 _refine.ls_R_factor_R_free 0.20573 _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.B_iso_mean 25.426 _refine.aniso_B[1][1] 1.31 _refine.aniso_B[2][2] 1.31 _refine.aniso_B[3][3] -2.62 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS AN FE4S4 LIGAND IS COVALENTLY BOUND TO CYS18A, CYS21A, CYS89A and CYS105A OF THE PROTEIN. AN UNIDENTIFIED ENTITY AT THE ACTIVE SITE IS MODELED AS UNL RESIDUE. ; _refine.pdbx_overall_ESU_R 0.124 _refine.pdbx_overall_ESU_R_Free 0.117 _refine.overall_SU_ML 0.081 _refine.overall_SU_B 2.880 _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.958 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.entry_id 1VK2 _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1479 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 114 _refine_hist.number_atoms_total 1604 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 44.09 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1516 0.018 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1427 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2061 1.671 1.983 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3303 0.867 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 189 5.693 5.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 235 0.091 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1667 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 300 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 318 0.208 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1682 0.239 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 924 0.084 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 82 0.146 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 2 0.044 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 31 0.353 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 4 0.095 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 946 2.039 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1539 3.691 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 570 6.419 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 510 9.483 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 1334 _refine_ls_shell.R_factor_R_work 0.258 _refine_ls_shell.percent_reflns_R_free 5.12 _refine_ls_shell.number_reflns_R_free 72 _refine_ls_shell.R_factor_R_free 0.341 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1VK2 _struct.title 'Crystal structure of Uracil-DNA glycosylase (TM0511) from Thermotoga maritima at 1.90 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;TM0511, URACIL-DNA GLYCOSYLASE, STRUCTURAL GENOMICS, JCSG, PSI, Protein Structure Initiative, Joint Center for Structural Genomics, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 1VK2 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9WYY1_THEMA _struct_ref.pdbx_db_accession Q9WYY1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MYTREELMEIVSERVKKCTACPLHLNRTNVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFVGRAGMLLTELLRESGIRRED VYICNVVKCRPPNNRTPTPEEQAACGHFLLAQIEIINPDVIVALGATALSFFVDGKKVSITKVRGNPIDWLGGKKVIPTF HPSYLLRNRSNELRRIVLEDIEKAKSFIKKEG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VK2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 204 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9WYY1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 192 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 192 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VK2 MET A 1 ? UNP Q9WYY1 ? ? 'expression tag' -11 1 1 1VK2 GLY A 2 ? UNP Q9WYY1 ? ? 'expression tag' -10 2 1 1VK2 SER A 3 ? UNP Q9WYY1 ? ? 'expression tag' -9 3 1 1VK2 ASP A 4 ? UNP Q9WYY1 ? ? 'expression tag' -8 4 1 1VK2 LYS A 5 ? UNP Q9WYY1 ? ? 'expression tag' -7 5 1 1VK2 ILE A 6 ? UNP Q9WYY1 ? ? 'expression tag' -6 6 1 1VK2 HIS A 7 ? UNP Q9WYY1 ? ? 'expression tag' -5 7 1 1VK2 HIS A 8 ? UNP Q9WYY1 ? ? 'expression tag' -4 8 1 1VK2 HIS A 9 ? UNP Q9WYY1 ? ? 'expression tag' -3 9 1 1VK2 HIS A 10 ? UNP Q9WYY1 ? ? 'expression tag' -2 10 1 1VK2 HIS A 11 ? UNP Q9WYY1 ? ? 'expression tag' -1 11 1 1VK2 HIS A 12 ? UNP Q9WYY1 ? ? 'expression tag' 0 12 1 1VK2 MSE A 13 ? UNP Q9WYY1 MET 1 'modified residue' 1 13 1 1VK2 MSE A 20 ? UNP Q9WYY1 MET 8 'modified residue' 8 14 1 1VK2 MSE A 77 ? UNP Q9WYY1 MET 65 'modified residue' 65 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 15 ? CYS A 30 ? THR A 3 CYS A 18 1 ? 16 HELX_P HELX_P2 2 CYS A 33 ? ASN A 38 ? CYS A 21 ASN A 26 5 ? 6 HELX_P HELX_P3 3 GLY A 61 ? GLY A 68 ? GLY A 49 GLY A 56 1 ? 8 HELX_P HELX_P4 4 GLY A 73 ? SER A 86 ? GLY A 61 SER A 74 1 ? 14 HELX_P HELX_P5 5 ARG A 89 ? ASP A 92 ? ARG A 77 ASP A 80 5 ? 4 HELX_P HELX_P6 6 PRO A 103 ? ARG A 107 ? PRO A 91 ARG A 95 5 ? 5 HELX_P HELX_P7 7 THR A 110 ? ASN A 129 ? THR A 98 ASN A 117 1 ? 20 HELX_P HELX_P8 8 GLY A 137 ? PHE A 144 ? GLY A 125 PHE A 132 1 ? 8 HELX_P HELX_P9 9 SER A 151 ? ARG A 156 ? SER A 139 ARG A 144 1 ? 6 HELX_P HELX_P10 10 LEU A 163 ? GLY A 165 ? LEU A 151 GLY A 153 5 ? 3 HELX_P HELX_P11 11 HIS A 173 ? ASN A 180 ? HIS A 161 ASN A 168 1 ? 8 HELX_P HELX_P12 12 SER A 182 ? SER A 198 ? SER A 170 SER A 186 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 13 C ? ? ? 1_555 A TYR 14 N ? ? A MSE 1 A TYR 2 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A LEU 19 C ? ? ? 1_555 A MSE 20 N ? ? A LEU 7 A MSE 8 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale3 covale both ? A MSE 20 C ? ? ? 1_555 A GLU 21 N ? ? A MSE 8 A GLU 9 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale4 covale both ? A GLY 76 C ? ? ? 1_555 A MSE 77 N ? ? A GLY 64 A MSE 65 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale5 covale both ? A MSE 77 C ? ? ? 1_555 A LEU 78 N ? ? A MSE 65 A LEU 66 1_555 ? ? ? ? ? ? ? 1.324 ? ? metalc1 metalc ? ? A CYS 30 SG ? ? ? 1_555 B SF4 . FE2 ? ? A CYS 18 A SF4 201 1_555 ? ? ? ? ? ? ? 2.397 ? ? metalc2 metalc ? ? A CYS 33 SG ? ? ? 1_555 B SF4 . FE4 ? ? A CYS 21 A SF4 201 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc3 metalc ? ? A CYS 101 SG ? ? ? 1_555 B SF4 . FE3 ? ? A CYS 89 A SF4 201 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc4 metalc ? ? A CYS 117 SG ? ? ? 1_555 B SF4 . FE1 ? ? A CYS 105 A SF4 201 1_555 ? ? ? ? ? ? ? 2.229 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 30 ? A CYS 18 ? 1_555 FE2 ? B SF4 . ? A SF4 201 ? 1_555 S1 ? B SF4 . ? A SF4 201 ? 1_555 117.9 ? 2 SG ? A CYS 30 ? A CYS 18 ? 1_555 FE2 ? B SF4 . ? A SF4 201 ? 1_555 S3 ? B SF4 . ? A SF4 201 ? 1_555 108.6 ? 3 S1 ? B SF4 . ? A SF4 201 ? 1_555 FE2 ? B SF4 . ? A SF4 201 ? 1_555 S3 ? B SF4 . ? A SF4 201 ? 1_555 106.0 ? 4 SG ? A CYS 30 ? A CYS 18 ? 1_555 FE2 ? B SF4 . ? A SF4 201 ? 1_555 S4 ? B SF4 . ? A SF4 201 ? 1_555 110.1 ? 5 S1 ? B SF4 . ? A SF4 201 ? 1_555 FE2 ? B SF4 . ? A SF4 201 ? 1_555 S4 ? B SF4 . ? A SF4 201 ? 1_555 105.5 ? 6 S3 ? B SF4 . ? A SF4 201 ? 1_555 FE2 ? B SF4 . ? A SF4 201 ? 1_555 S4 ? B SF4 . ? A SF4 201 ? 1_555 108.4 ? 7 SG ? A CYS 33 ? A CYS 21 ? 1_555 FE4 ? B SF4 . ? A SF4 201 ? 1_555 S1 ? B SF4 . ? A SF4 201 ? 1_555 112.7 ? 8 SG ? A CYS 33 ? A CYS 21 ? 1_555 FE4 ? B SF4 . ? A SF4 201 ? 1_555 S2 ? B SF4 . ? A SF4 201 ? 1_555 105.3 ? 9 S1 ? B SF4 . ? A SF4 201 ? 1_555 FE4 ? B SF4 . ? A SF4 201 ? 1_555 S2 ? B SF4 . ? A SF4 201 ? 1_555 105.6 ? 10 SG ? A CYS 33 ? A CYS 21 ? 1_555 FE4 ? B SF4 . ? A SF4 201 ? 1_555 S3 ? B SF4 . ? A SF4 201 ? 1_555 120.1 ? 11 S1 ? B SF4 . ? A SF4 201 ? 1_555 FE4 ? B SF4 . ? A SF4 201 ? 1_555 S3 ? B SF4 . ? A SF4 201 ? 1_555 104.9 ? 12 S2 ? B SF4 . ? A SF4 201 ? 1_555 FE4 ? B SF4 . ? A SF4 201 ? 1_555 S3 ? B SF4 . ? A SF4 201 ? 1_555 107.2 ? 13 SG ? A CYS 101 ? A CYS 89 ? 1_555 FE3 ? B SF4 . ? A SF4 201 ? 1_555 S1 ? B SF4 . ? A SF4 201 ? 1_555 120.1 ? 14 SG ? A CYS 101 ? A CYS 89 ? 1_555 FE3 ? B SF4 . ? A SF4 201 ? 1_555 S2 ? B SF4 . ? A SF4 201 ? 1_555 105.9 ? 15 S1 ? B SF4 . ? A SF4 201 ? 1_555 FE3 ? B SF4 . ? A SF4 201 ? 1_555 S2 ? B SF4 . ? A SF4 201 ? 1_555 105.4 ? 16 SG ? A CYS 101 ? A CYS 89 ? 1_555 FE3 ? B SF4 . ? A SF4 201 ? 1_555 S4 ? B SF4 . ? A SF4 201 ? 1_555 114.9 ? 17 S1 ? B SF4 . ? A SF4 201 ? 1_555 FE3 ? B SF4 . ? A SF4 201 ? 1_555 S4 ? B SF4 . ? A SF4 201 ? 1_555 104.1 ? 18 S2 ? B SF4 . ? A SF4 201 ? 1_555 FE3 ? B SF4 . ? A SF4 201 ? 1_555 S4 ? B SF4 . ? A SF4 201 ? 1_555 105.2 ? 19 SG ? A CYS 117 ? A CYS 105 ? 1_555 FE1 ? B SF4 . ? A SF4 201 ? 1_555 S2 ? B SF4 . ? A SF4 201 ? 1_555 112.0 ? 20 SG ? A CYS 117 ? A CYS 105 ? 1_555 FE1 ? B SF4 . ? A SF4 201 ? 1_555 S3 ? B SF4 . ? A SF4 201 ? 1_555 112.9 ? 21 S2 ? B SF4 . ? A SF4 201 ? 1_555 FE1 ? B SF4 . ? A SF4 201 ? 1_555 S3 ? B SF4 . ? A SF4 201 ? 1_555 105.4 ? 22 SG ? A CYS 117 ? A CYS 105 ? 1_555 FE1 ? B SF4 . ? A SF4 201 ? 1_555 S4 ? B SF4 . ? A SF4 201 ? 1_555 115.2 ? 23 S2 ? B SF4 . ? A SF4 201 ? 1_555 FE1 ? B SF4 . ? A SF4 201 ? 1_555 S4 ? B SF4 . ? A SF4 201 ? 1_555 103.2 ? 24 S3 ? B SF4 . ? A SF4 201 ? 1_555 FE1 ? B SF4 . ? A SF4 201 ? 1_555 S4 ? B SF4 . ? A SF4 201 ? 1_555 107.3 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 13 ? . . . . MSE A 1 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 20 ? . . . . MSE A 8 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 77 ? . . . . MSE A 65 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 46 ? GLY A 47 ? GLU A 34 GLY A 35 A 2 TYR A 94 ? ASN A 97 ? TYR A 82 ASN A 85 A 3 ILE A 53 ? GLY A 57 ? ILE A 41 GLY A 45 A 4 VAL A 132 ? LEU A 136 ? VAL A 120 LEU A 124 A 5 LYS A 167 ? THR A 171 ? LYS A 155 THR A 159 A 6 ILE A 160 ? ASP A 161 ? ILE A 148 ASP A 149 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 46 ? N GLU A 34 O ILE A 95 ? O ILE A 83 A 2 3 O TYR A 94 ? O TYR A 82 N PHE A 55 ? N PHE A 43 A 3 4 N VAL A 56 ? N VAL A 44 O LEU A 136 ? O LEU A 124 A 4 5 N ALA A 135 ? N ALA A 123 O THR A 171 ? O THR A 159 A 5 6 O VAL A 168 ? O VAL A 156 N ILE A 160 ? N ILE A 148 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SF4 201 ? 5 'BINDING SITE FOR RESIDUE SF4 A 201' AC2 Software A UNL 301 ? 5 'BINDING SITE FOR RESIDUE UNL A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CYS A 30 ? CYS A 18 . ? 1_555 ? 2 AC1 5 CYS A 33 ? CYS A 21 . ? 1_555 ? 3 AC1 5 HIS A 36 ? HIS A 24 . ? 1_555 ? 4 AC1 5 CYS A 101 ? CYS A 89 . ? 1_555 ? 5 AC1 5 CYS A 117 ? CYS A 105 . ? 1_555 ? 6 AC2 5 GLU A 58 ? GLU A 46 . ? 1_555 ? 7 AC2 5 GLY A 59 ? GLY A 47 . ? 1_555 ? 8 AC2 5 HIS A 173 ? HIS A 161 . ? 1_555 ? 9 AC2 5 HOH D . ? HOH A 305 . ? 1_555 ? 10 AC2 5 HOH D . ? HOH A 319 . ? 1_555 ? # _pdbx_entry_details.entry_id 1VK2 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 134 ? ? CG A ASP 134 ? ? OD2 A ASP 134 ? ? 123.73 118.30 5.43 0.90 N 2 1 NE A ARG 167 ? ? CZ A ARG 167 ? ? NH1 A ARG 167 ? ? 124.46 120.30 4.16 0.50 N 3 1 NE A ARG 167 ? ? CZ A ARG 167 ? ? NH2 A ARG 167 ? ? 114.48 120.30 -5.82 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TRP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 150 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -110.31 _pdbx_validate_torsion.psi -165.55 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 20 A MSE 8 ? MET SELENOMETHIONINE 3 A MSE 77 A MSE 65 ? MET SELENOMETHIONINE # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details . _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 52.7080 _pdbx_refine_tls.origin_y 21.5221 _pdbx_refine_tls.origin_z 73.6181 _pdbx_refine_tls.T[1][1] 0.0066 _pdbx_refine_tls.T[2][2] 0.0575 _pdbx_refine_tls.T[3][3] 0.0393 _pdbx_refine_tls.T[1][2] -0.0035 _pdbx_refine_tls.T[1][3] 0.0035 _pdbx_refine_tls.T[2][3] -0.0075 _pdbx_refine_tls.L[1][1] 1.7978 _pdbx_refine_tls.L[2][2] 1.7406 _pdbx_refine_tls.L[3][3] 2.3389 _pdbx_refine_tls.L[1][2] -0.3729 _pdbx_refine_tls.L[1][3] -0.9715 _pdbx_refine_tls.L[2][3] 0.0869 _pdbx_refine_tls.S[1][1] 0.1389 _pdbx_refine_tls.S[2][2] -0.0970 _pdbx_refine_tls.S[3][3] -0.0419 _pdbx_refine_tls.S[1][2] 0.1117 _pdbx_refine_tls.S[1][3] -0.0024 _pdbx_refine_tls.S[2][3] 0.1638 _pdbx_refine_tls.S[2][1] -0.0610 _pdbx_refine_tls.S[3][1] -0.1049 _pdbx_refine_tls.S[3][2] -0.1420 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 13 _pdbx_refine_tls_group.end_label_asym_id B _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 201 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _pdbx_database_remark.id 600 _pdbx_database_remark.text ;HETEROGEN AN UNIDENTIFIED ENTITY AT THE ACTIVE SITE IS MODELED AS A UNL, UNKNOWN LIGAND, RESIDUE. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -11 ? A MET 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A HIS -2 ? A HIS 10 11 1 Y 1 A HIS -1 ? A HIS 11 12 1 Y 1 A HIS 0 ? A HIS 12 13 1 Y 1 A GLY 192 ? A GLY 204 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MSE N N N N 250 MSE CA C N S 251 MSE C C N N 252 MSE O O N N 253 MSE OXT O N N 254 MSE CB C N N 255 MSE CG C N N 256 MSE SE SE N N 257 MSE CE C N N 258 MSE H H N N 259 MSE H2 H N N 260 MSE HA H N N 261 MSE HXT H N N 262 MSE HB2 H N N 263 MSE HB3 H N N 264 MSE HG2 H N N 265 MSE HG3 H N N 266 MSE HE1 H N N 267 MSE HE2 H N N 268 MSE HE3 H N N 269 PHE N N N N 270 PHE CA C N S 271 PHE C C N N 272 PHE O O N N 273 PHE CB C N N 274 PHE CG C Y N 275 PHE CD1 C Y N 276 PHE CD2 C Y N 277 PHE CE1 C Y N 278 PHE CE2 C Y N 279 PHE CZ C Y N 280 PHE OXT O N N 281 PHE H H N N 282 PHE H2 H N N 283 PHE HA H N N 284 PHE HB2 H N N 285 PHE HB3 H N N 286 PHE HD1 H N N 287 PHE HD2 H N N 288 PHE HE1 H N N 289 PHE HE2 H N N 290 PHE HZ H N N 291 PHE HXT H N N 292 PRO N N N N 293 PRO CA C N S 294 PRO C C N N 295 PRO O O N N 296 PRO CB C N N 297 PRO CG C N N 298 PRO CD C N N 299 PRO OXT O N N 300 PRO H H N N 301 PRO HA H N N 302 PRO HB2 H N N 303 PRO HB3 H N N 304 PRO HG2 H N N 305 PRO HG3 H N N 306 PRO HD2 H N N 307 PRO HD3 H N N 308 PRO HXT H N N 309 SER N N N N 310 SER CA C N S 311 SER C C N N 312 SER O O N N 313 SER CB C N N 314 SER OG O N N 315 SER OXT O N N 316 SER H H N N 317 SER H2 H N N 318 SER HA H N N 319 SER HB2 H N N 320 SER HB3 H N N 321 SER HG H N N 322 SER HXT H N N 323 SF4 FE1 FE N N 324 SF4 FE2 FE N N 325 SF4 FE3 FE N N 326 SF4 FE4 FE N N 327 SF4 S1 S N N 328 SF4 S2 S N N 329 SF4 S3 S N N 330 SF4 S4 S N N 331 THR N N N N 332 THR CA C N S 333 THR C C N N 334 THR O O N N 335 THR CB C N R 336 THR OG1 O N N 337 THR CG2 C N N 338 THR OXT O N N 339 THR H H N N 340 THR H2 H N N 341 THR HA H N N 342 THR HB H N N 343 THR HG1 H N N 344 THR HG21 H N N 345 THR HG22 H N N 346 THR HG23 H N N 347 THR HXT H N N 348 TRP N N N N 349 TRP CA C N S 350 TRP C C N N 351 TRP O O N N 352 TRP CB C N N 353 TRP CG C Y N 354 TRP CD1 C Y N 355 TRP CD2 C Y N 356 TRP NE1 N Y N 357 TRP CE2 C Y N 358 TRP CE3 C Y N 359 TRP CZ2 C Y N 360 TRP CZ3 C Y N 361 TRP CH2 C Y N 362 TRP OXT O N N 363 TRP H H N N 364 TRP H2 H N N 365 TRP HA H N N 366 TRP HB2 H N N 367 TRP HB3 H N N 368 TRP HD1 H N N 369 TRP HE1 H N N 370 TRP HE3 H N N 371 TRP HZ2 H N N 372 TRP HZ3 H N N 373 TRP HH2 H N N 374 TRP HXT H N N 375 TYR N N N N 376 TYR CA C N S 377 TYR C C N N 378 TYR O O N N 379 TYR CB C N N 380 TYR CG C Y N 381 TYR CD1 C Y N 382 TYR CD2 C Y N 383 TYR CE1 C Y N 384 TYR CE2 C Y N 385 TYR CZ C Y N 386 TYR OH O N N 387 TYR OXT O N N 388 TYR H H N N 389 TYR H2 H N N 390 TYR HA H N N 391 TYR HB2 H N N 392 TYR HB3 H N N 393 TYR HD1 H N N 394 TYR HD2 H N N 395 TYR HE1 H N N 396 TYR HE2 H N N 397 TYR HH H N N 398 TYR HXT H N N 399 VAL N N N N 400 VAL CA C N S 401 VAL C C N N 402 VAL O O N N 403 VAL CB C N N 404 VAL CG1 C N N 405 VAL CG2 C N N 406 VAL OXT O N N 407 VAL H H N N 408 VAL H2 H N N 409 VAL HA H N N 410 VAL HB H N N 411 VAL HG11 H N N 412 VAL HG12 H N N 413 VAL HG13 H N N 414 VAL HG21 H N N 415 VAL HG22 H N N 416 VAL HG23 H N N 417 VAL HXT H N N 418 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 MSE N CA sing N N 237 MSE N H sing N N 238 MSE N H2 sing N N 239 MSE CA C sing N N 240 MSE CA CB sing N N 241 MSE CA HA sing N N 242 MSE C O doub N N 243 MSE C OXT sing N N 244 MSE OXT HXT sing N N 245 MSE CB CG sing N N 246 MSE CB HB2 sing N N 247 MSE CB HB3 sing N N 248 MSE CG SE sing N N 249 MSE CG HG2 sing N N 250 MSE CG HG3 sing N N 251 MSE SE CE sing N N 252 MSE CE HE1 sing N N 253 MSE CE HE2 sing N N 254 MSE CE HE3 sing N N 255 PHE N CA sing N N 256 PHE N H sing N N 257 PHE N H2 sing N N 258 PHE CA C sing N N 259 PHE CA CB sing N N 260 PHE CA HA sing N N 261 PHE C O doub N N 262 PHE C OXT sing N N 263 PHE CB CG sing N N 264 PHE CB HB2 sing N N 265 PHE CB HB3 sing N N 266 PHE CG CD1 doub Y N 267 PHE CG CD2 sing Y N 268 PHE CD1 CE1 sing Y N 269 PHE CD1 HD1 sing N N 270 PHE CD2 CE2 doub Y N 271 PHE CD2 HD2 sing N N 272 PHE CE1 CZ doub Y N 273 PHE CE1 HE1 sing N N 274 PHE CE2 CZ sing Y N 275 PHE CE2 HE2 sing N N 276 PHE CZ HZ sing N N 277 PHE OXT HXT sing N N 278 PRO N CA sing N N 279 PRO N CD sing N N 280 PRO N H sing N N 281 PRO CA C sing N N 282 PRO CA CB sing N N 283 PRO CA HA sing N N 284 PRO C O doub N N 285 PRO C OXT sing N N 286 PRO CB CG sing N N 287 PRO CB HB2 sing N N 288 PRO CB HB3 sing N N 289 PRO CG CD sing N N 290 PRO CG HG2 sing N N 291 PRO CG HG3 sing N N 292 PRO CD HD2 sing N N 293 PRO CD HD3 sing N N 294 PRO OXT HXT sing N N 295 SER N CA sing N N 296 SER N H sing N N 297 SER N H2 sing N N 298 SER CA C sing N N 299 SER CA CB sing N N 300 SER CA HA sing N N 301 SER C O doub N N 302 SER C OXT sing N N 303 SER CB OG sing N N 304 SER CB HB2 sing N N 305 SER CB HB3 sing N N 306 SER OG HG sing N N 307 SER OXT HXT sing N N 308 SF4 FE1 S2 sing N N 309 SF4 FE1 S3 sing N N 310 SF4 FE1 S4 sing N N 311 SF4 FE2 S1 sing N N 312 SF4 FE2 S3 sing N N 313 SF4 FE2 S4 sing N N 314 SF4 FE3 S1 sing N N 315 SF4 FE3 S2 sing N N 316 SF4 FE3 S4 sing N N 317 SF4 FE4 S1 sing N N 318 SF4 FE4 S2 sing N N 319 SF4 FE4 S3 sing N N 320 THR N CA sing N N 321 THR N H sing N N 322 THR N H2 sing N N 323 THR CA C sing N N 324 THR CA CB sing N N 325 THR CA HA sing N N 326 THR C O doub N N 327 THR C OXT sing N N 328 THR CB OG1 sing N N 329 THR CB CG2 sing N N 330 THR CB HB sing N N 331 THR OG1 HG1 sing N N 332 THR CG2 HG21 sing N N 333 THR CG2 HG22 sing N N 334 THR CG2 HG23 sing N N 335 THR OXT HXT sing N N 336 TRP N CA sing N N 337 TRP N H sing N N 338 TRP N H2 sing N N 339 TRP CA C sing N N 340 TRP CA CB sing N N 341 TRP CA HA sing N N 342 TRP C O doub N N 343 TRP C OXT sing N N 344 TRP CB CG sing N N 345 TRP CB HB2 sing N N 346 TRP CB HB3 sing N N 347 TRP CG CD1 doub Y N 348 TRP CG CD2 sing Y N 349 TRP CD1 NE1 sing Y N 350 TRP CD1 HD1 sing N N 351 TRP CD2 CE2 doub Y N 352 TRP CD2 CE3 sing Y N 353 TRP NE1 CE2 sing Y N 354 TRP NE1 HE1 sing N N 355 TRP CE2 CZ2 sing Y N 356 TRP CE3 CZ3 doub Y N 357 TRP CE3 HE3 sing N N 358 TRP CZ2 CH2 doub Y N 359 TRP CZ2 HZ2 sing N N 360 TRP CZ3 CH2 sing Y N 361 TRP CZ3 HZ3 sing N N 362 TRP CH2 HH2 sing N N 363 TRP OXT HXT sing N N 364 TYR N CA sing N N 365 TYR N H sing N N 366 TYR N H2 sing N N 367 TYR CA C sing N N 368 TYR CA CB sing N N 369 TYR CA HA sing N N 370 TYR C O doub N N 371 TYR C OXT sing N N 372 TYR CB CG sing N N 373 TYR CB HB2 sing N N 374 TYR CB HB3 sing N N 375 TYR CG CD1 doub Y N 376 TYR CG CD2 sing Y N 377 TYR CD1 CE1 sing Y N 378 TYR CD1 HD1 sing N N 379 TYR CD2 CE2 doub Y N 380 TYR CD2 HD2 sing N N 381 TYR CE1 CZ doub Y N 382 TYR CE1 HE1 sing N N 383 TYR CE2 CZ sing Y N 384 TYR CE2 HE2 sing N N 385 TYR CZ OH sing N N 386 TYR OH HH sing N N 387 TYR OXT HXT sing N N 388 VAL N CA sing N N 389 VAL N H sing N N 390 VAL N H2 sing N N 391 VAL CA C sing N N 392 VAL CA CB sing N N 393 VAL CA HA sing N N 394 VAL C O doub N N 395 VAL C OXT sing N N 396 VAL CB CG1 sing N N 397 VAL CB CG2 sing N N 398 VAL CB HB sing N N 399 VAL CG1 HG11 sing N N 400 VAL CG1 HG12 sing N N 401 VAL CG1 HG13 sing N N 402 VAL CG2 HG21 sing N N 403 VAL CG2 HG22 sing N N 404 VAL CG2 HG23 sing N N 405 VAL OXT HXT sing N N 406 # _atom_sites.entry_id 1VK2 _atom_sites.fract_transf_matrix[1][1] 0.016380 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016380 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007843 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S SE # loop_