HEADER DEHYDROGENASE 20-JUL-04 1VLC TITLE CRYSTAL STRUCTURE OF 3-ISOPROPYLMALATE DEHYDROGENASE (TM0556) FROM TITLE 2 THERMOTOGA MARITIMA AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-ISOPROPYLMALATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-IPM DEHYDROGENASE, IMDH, 3-IPM-DH; COMPND 5 EC: 1.1.1.85; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: LEUB, TM0556; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0556, 3-ISOPROPYLMALATE DEHYDROGENASE, STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, DEHYDROGENASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 1VLC 1 REMARK SEQADV REVDAT 6 04-OCT-17 1VLC 1 REMARK REVDAT 5 13-JUL-11 1VLC 1 VERSN REVDAT 4 24-FEB-09 1VLC 1 VERSN REVDAT 3 28-MAR-06 1VLC 1 JRNL REVDAT 2 18-JAN-05 1VLC 1 AUTHOR KEYWDS REMARK REVDAT 1 21-SEP-04 1VLC 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF 3-ISOPROPYLMALATE DEHYDROGENASE JRNL TITL 2 (TM0556) FROM THERMOTOGA MARITIMA AT 1.90 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 34079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1801 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2207 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2723 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 39.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.45000 REMARK 3 B22 (A**2) : 1.45000 REMARK 3 B33 (A**2) : -2.18000 REMARK 3 B12 (A**2) : 0.73000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.093 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2785 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2647 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3775 ; 1.673 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6101 ; 0.872 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 6.197 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;31.297 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 472 ;13.779 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.243 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 435 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3092 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 543 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 556 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2660 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1392 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1671 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 99 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.146 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 65 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.129 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1845 ; 2.902 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 736 ; 0.748 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2882 ; 3.795 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1061 ; 6.495 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 893 ; 8.908 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -7 A 354 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1169 86.0493 21.2791 REMARK 3 T TENSOR REMARK 3 T11: -0.0666 T22: -0.0592 REMARK 3 T33: 0.0526 T12: -0.0005 REMARK 3 T13: 0.0279 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.3492 L22: 2.2755 REMARK 3 L33: 0.3667 L12: -0.3432 REMARK 3 L13: -0.0573 L23: 0.4393 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: -0.0637 S13: 0.0768 REMARK 3 S21: -0.0791 S22: 0.0112 S23: -0.3824 REMARK 3 S31: 0.0599 S32: 0.0158 S33: 0.0032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS 2. THE DENSITY FOR LOOP 78-83,330-335 ARE POOR, REMARK 3 MODEL FOR THESE TWO LOOPS ARE LESS RELIABLE 3. BIOLOGICAL UNIT REMARK 3 AS A DIMER IS INFERRED FROM HOMOLOGOUS PROTEINS (1A05,1CM7) REMARK 4 REMARK 4 1VLC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000001978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-04; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL11-1; BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979454; 0.979251, 0.979508, REMARK 200 0.885567 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR; NULL REMARK 200 OPTICS : FLAT MIRROR; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36394 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 41.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.68400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP, SOLOMON, SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25.0% PEG-4000, 0.2M LI2SO4, 0.1M TRIS REMARK 280 PH 9.0 , VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE REMARK 280 277K. 20.0% PEG-8000, 0.1M HEPES PH 7.5, VAPOR DIFFUSION,SITTING REMARK 280 DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 205.73299 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 56.69900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A -7 CB CG CD CE NZ REMARK 470 LYS A 21 NZ REMARK 470 GLU A 24 CD OE1 OE2 REMARK 470 LYS A 28 CD CE NZ REMARK 470 LYS A 29 CE NZ REMARK 470 LYS A 59 CD CE NZ REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 ASP A 78 CG OD1 OD2 REMARK 470 ASP A 79 CB CG OD1 OD2 REMARK 470 LEU A 80 CG CD1 CD2 REMARK 470 PRO A 82 CB CG CD REMARK 470 GLU A 83 OE1 OE2 REMARK 470 LYS A 84 CD CE NZ REMARK 470 ARG A 85 NE CZ NH1 NH2 REMARK 470 LYS A 96 NZ REMARK 470 LYS A 108 CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 VAL A 123 CG1 REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 LYS A 152 CE NZ REMARK 470 LYS A 176 NZ REMARK 470 LYS A 181 CD CE NZ REMARK 470 SER A 276 OG REMARK 470 ASP A 279 CG OD1 OD2 REMARK 470 LYS A 283 CE NZ REMARK 470 GLU A 307 CD OE1 OE2 REMARK 470 LYS A 311 CE NZ REMARK 470 GLU A 313 CD OE1 OE2 REMARK 470 ASP A 328 CB CG OD1 OD2 REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 ASP A 332 CG OD1 OD2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 ASP A 344 CG OD1 OD2 REMARK 470 LYS A 348 CG CD CE NZ REMARK 470 GLU A 351 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 65 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 155 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 247 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 79 -16.96 96.05 REMARK 500 PRO A 81 -136.84 -48.75 REMARK 500 PRO A 82 -64.12 -101.60 REMARK 500 TYR A 138 -143.92 -151.52 REMARK 500 ASP A 149 -163.02 -125.79 REMARK 500 ARG A 178 -121.17 -122.32 REMARK 500 VAL A 190 -33.07 -137.40 REMARK 500 LYS A 228 68.18 -155.40 REMARK 500 ASP A 233 -87.78 -112.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 355 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282429 RELATED DB: TARGETDB DBREF 1VLC A 1 354 UNP Q9WZ26 LEU3_THEMA 1 354 SEQADV 1VLC MET A -11 UNP Q9WZ26 EXPRESSION TAG SEQADV 1VLC GLY A -10 UNP Q9WZ26 EXPRESSION TAG SEQADV 1VLC SER A -9 UNP Q9WZ26 EXPRESSION TAG SEQADV 1VLC ASP A -8 UNP Q9WZ26 EXPRESSION TAG SEQADV 1VLC LYS A -7 UNP Q9WZ26 EXPRESSION TAG SEQADV 1VLC ILE A -6 UNP Q9WZ26 EXPRESSION TAG SEQADV 1VLC HIS A -5 UNP Q9WZ26 EXPRESSION TAG SEQADV 1VLC HIS A -4 UNP Q9WZ26 EXPRESSION TAG SEQADV 1VLC HIS A -3 UNP Q9WZ26 EXPRESSION TAG SEQADV 1VLC HIS A -2 UNP Q9WZ26 EXPRESSION TAG SEQADV 1VLC HIS A -1 UNP Q9WZ26 EXPRESSION TAG SEQADV 1VLC HIS A 0 UNP Q9WZ26 EXPRESSION TAG SEQRES 1 A 366 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 366 LYS ILE ALA VAL LEU PRO GLY ASP GLY ILE GLY PRO GLU SEQRES 3 A 366 VAL VAL ARG GLU ALA LEU LYS VAL LEU GLU VAL VAL GLU SEQRES 4 A 366 LYS LYS THR GLY LYS THR PHE GLU LYS VAL PHE GLY HIS SEQRES 5 A 366 ILE GLY GLY ASP ALA ILE ASP ARG PHE GLY GLU PRO LEU SEQRES 6 A 366 PRO GLU GLU THR LYS LYS ILE CYS LEU GLU ALA ASP ALA SEQRES 7 A 366 ILE PHE LEU GLY SER VAL GLY GLY PRO LYS TRP ASP ASP SEQRES 8 A 366 LEU PRO PRO GLU LYS ARG PRO GLU ILE GLY GLY LEU LEU SEQRES 9 A 366 ALA LEU ARG LYS MET LEU ASN LEU TYR ALA ASN ILE ARG SEQRES 10 A 366 PRO ILE LYS VAL TYR ARG SER LEU VAL HIS VAL SER PRO SEQRES 11 A 366 LEU LYS GLU LYS VAL ILE GLY SER GLY VAL ASP LEU VAL SEQRES 12 A 366 THR VAL ARG GLU LEU SER TYR GLY VAL TYR TYR GLY GLN SEQRES 13 A 366 PRO ARG GLY LEU ASP GLU GLU LYS GLY PHE ASP THR MET SEQRES 14 A 366 ILE TYR ASP ARG LYS THR VAL GLU ARG ILE ALA ARG THR SEQRES 15 A 366 ALA PHE GLU ILE ALA LYS ASN ARG ARG LYS LYS VAL THR SEQRES 16 A 366 SER VAL ASP LYS ALA ASN VAL LEU TYR SER SER MET LEU SEQRES 17 A 366 TRP ARG LYS VAL VAL ASN GLU VAL ALA ARG GLU TYR PRO SEQRES 18 A 366 ASP VAL GLU LEU THR HIS ILE TYR VAL ASP ASN ALA ALA SEQRES 19 A 366 MET GLN LEU ILE LEU LYS PRO SER GLN PHE ASP VAL ILE SEQRES 20 A 366 LEU THR THR ASN MET PHE GLY ASP ILE LEU SER ASP GLU SEQRES 21 A 366 SER ALA ALA LEU PRO GLY SER LEU GLY LEU LEU PRO SER SEQRES 22 A 366 ALA SER PHE GLY ASP LYS ASN LEU TYR GLU PRO ALA GLY SEQRES 23 A 366 GLY SER ALA PRO ASP ILE ALA GLY LYS ASN ILE ALA ASN SEQRES 24 A 366 PRO ILE ALA GLN ILE LEU SER LEU ALA MET MET LEU GLU SEQRES 25 A 366 HIS SER PHE GLY MET VAL GLU GLU ALA ARG LYS ILE GLU SEQRES 26 A 366 ARG ALA VAL GLU LEU VAL ILE GLU GLU GLY TYR ARG THR SEQRES 27 A 366 ARG ASP ILE ALA GLU ASP PRO GLU LYS ALA VAL SER THR SEQRES 28 A 366 SER GLN MET GLY ASP LEU ILE CYS LYS LYS LEU GLU GLU SEQRES 29 A 366 ILE TRP HET CL A 355 1 HETNAM CL CHLORIDE ION FORMUL 2 CL CL 1- FORMUL 3 HOH *106(H2 O) HELIX 1 1 GLY A 10 GLY A 31 1 22 HELIX 2 2 GLY A 42 GLY A 50 1 9 HELIX 3 3 PRO A 54 ALA A 64 1 11 HELIX 4 4 GLY A 74 ASP A 78 5 5 HELIX 5 5 ARG A 85 GLY A 90 1 6 HELIX 6 6 GLY A 90 LEU A 98 1 9 HELIX 7 7 TYR A 110 SER A 117 5 8 HELIX 8 8 LYS A 120 GLY A 125 1 6 HELIX 9 9 TYR A 138 TYR A 142 5 5 HELIX 10 10 ASP A 160 ASN A 177 1 18 HELIX 11 11 LEU A 191 ARG A 206 1 16 HELIX 12 12 VAL A 218 LYS A 228 1 11 HELIX 13 13 PRO A 229 PHE A 232 5 4 HELIX 14 14 THR A 238 ALA A 250 1 13 HELIX 15 15 SER A 255 LEU A 258 5 4 HELIX 16 16 PRO A 288 GLY A 304 1 17 HELIX 17 17 MET A 305 GLU A 322 1 18 HELIX 18 18 THR A 326 ALA A 330 5 5 HELIX 19 19 ASP A 332 ALA A 336 5 5 HELIX 20 20 SER A 338 TRP A 354 1 17 SHEET 1 A10 THR A 33 PHE A 38 0 SHEET 2 A10 HIS A 0 GLY A 8 1 N MET A 1 O GLU A 35 SHEET 3 A10 ALA A 66 SER A 71 1 O PHE A 68 N LEU A 6 SHEET 4 A10 ASN A 268 PRO A 272 1 O TYR A 270 N ILE A 67 SHEET 5 A10 PRO A 260 PHE A 264 -1 N SER A 263 O LEU A 269 SHEET 6 A10 ALA A 102 LYS A 108 -1 N ILE A 104 O ALA A 262 SHEET 7 A10 ASP A 129 GLU A 135 -1 O LEU A 130 N ILE A 107 SHEET 8 A10 VAL A 234 THR A 237 1 O ILE A 235 N VAL A 133 SHEET 9 A10 LYS A 181 ASP A 186 1 N THR A 183 O VAL A 234 SHEET 10 A10 GLU A 212 TYR A 217 1 O GLU A 212 N VAL A 182 SHEET 1 B 2 GLY A 143 LEU A 148 0 SHEET 2 B 2 GLY A 153 THR A 156 -1 O PHE A 154 N GLY A 147 CISPEP 1 GLN A 144 PRO A 145 0 -3.93 SITE 1 AC1 3 GLY A 139 VAL A 140 MET A 240 CRYST1 118.780 118.780 56.699 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008419 0.004861 0.000000 0.00000 SCALE2 0.000000 0.009721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017637 0.00000