data_1VM3 # _entry.id 1VM3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VM3 pdb_00001vm3 10.2210/pdb1vm3/pdb RCSB RCSB001999 ? ? WWPDB D_1000001999 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-12-07 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-06-24 5 'Structure model' 1 4 2023-12-27 6 'Structure model' 1 5 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Source and taxonomy' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_entity_src_syn 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref 6 4 'Structure model' struct_ref_seq 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' database_2 10 5 'Structure model' struct_site 11 6 'Structure model' pdbx_entry_details 12 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 2 4 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 3 4 'Structure model' '_pdbx_entity_src_syn.pdbx_beg_seq_num' 4 4 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_database_2.pdbx_DOI' 7 5 'Structure model' '_database_2.pdbx_database_accession' 8 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 1VM3 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2004-08-31 _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1O53 'NMR structure of the membrane anchor' unspecified PDB 1vm2 . unspecified PDB 1vm4 . unspecified PDB 1vm5 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, G.' 1 'Li, X.' 2 # _citation.id primary _citation.title ;Correlation of Three-dimensional Structures with the Antibacterial Activity of a Group of Peptides Designed Based on a Nontoxic Bacterial Membrane Anchor. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 5803 _citation.page_last 5811 _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15572363 _citation.pdbx_database_id_DOI 10.1074/jbc.M410116200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, G.' 1 ? primary 'Li, Y.' 2 ? primary 'Li, X.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'peptide A3' _entity.formula_weight 1438.668 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GLFDIVKSLVSDF(NH2)' _entity_poly.pdbx_seq_one_letter_code_can GLFDIVKSLVSDFX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 PHE n 1 4 ASP n 1 5 ILE n 1 6 VAL n 1 7 LYS n 1 8 SER n 1 9 LEU n 1 10 VAL n 1 11 SER n 1 12 ASP n 1 13 PHE n 1 14 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'The peptide was synthesized using the solid-phase method and purified by HPLC.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 NH2 14 14 14 NH2 NH2 A . n # _cell.entry_id 1VM3 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VM3 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1VM3 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1VM3 _struct.title 'Solution structure of a membrane-targeting peptide designed based on the N-terminal sequence of E. coli enzyme IIA (Glucose)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'amphipathic helix, antimicrobial peptide, bacterial membrane anchor, membrane binding, ANTIBIOTIC' _struct_keywords.entry_id 1VM3 _struct_keywords.pdbx_keywords ANTIBIOTIC # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1VM3 _struct_ref.pdbx_db_accession 1VM3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VM3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 14 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1VM3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 14 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id LEU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 2 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id VAL _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 10 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id LEU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 2 _struct_conf.end_auth_comp_id VAL _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 10 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id PHE _struct_conn.ptnr1_label_seq_id 13 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id NH2 _struct_conn.ptnr2_label_seq_id 14 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PHE _struct_conn.ptnr1_auth_seq_id 13 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NH2 _struct_conn.ptnr2_auth_seq_id 14 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.306 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id NH2 _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 14 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id PHE _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 13 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id NH2 _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 14 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id PHE _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 13 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id PHE _pdbx_modification_feature.ref_pcm_id 15 _pdbx_modification_feature.ref_comp_id NH2 _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Terminal amidation' # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NH2 _struct_site.pdbx_auth_seq_id 14 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE NH2 A 14' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 VAL A 10 ? VAL A 10 . ? 1_555 ? 2 AC1 3 ASP A 12 ? ASP A 12 . ? 1_555 ? 3 AC1 3 PHE A 13 ? PHE A 13 . ? 1_555 ? # _pdbx_entry_details.entry_id 1VM3 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 2 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLY _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 H _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASP _pdbx_validate_close_contact.auth_seq_id_2 4 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 12 ? ? -87.57 -87.59 2 2 LEU A 2 ? ? -44.90 -19.19 3 2 ASP A 12 ? ? -89.97 -79.01 4 3 ASP A 12 ? ? -89.84 -74.50 5 4 ASP A 12 ? ? -90.71 -84.30 6 5 ASP A 12 ? ? -90.94 -83.53 # _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.conformer_selection_criteria ;No NOE violations greater than 0.50 A, rms difference for bond deviations from ideality less than 0.01 A, rms difference for angle deviations from ideality less than 5 degrees, Structures with the lowerest energies in the ensemble. ; _pdbx_nmr_ensemble.entry_id 1VM3 _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'most resemble the average structure' _pdbx_nmr_representative.entry_id 1VM3 # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2mM peptide, 80mM sodium dodecylsulfate, 90% H2O and 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O and 10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 5.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 TOCSY 3 1 1 DQF-COSY 4 1 1 '(1H,15N)HSQC' 5 1 1 '(1H,13C)HSQC' # _pdbx_nmr_details.text ;This structure was determined using standard 2D homonuclear NMR techniques, plus the use of backbone angle restraints derived from a set of heteronuclear chemical shifts measured on the natural abundance peptide bound to micelles. ; _pdbx_nmr_details.entry_id 1VM3 # _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;The structures are based on 104 distances derived from the NOESY spectra, 20 backbone dihedral angles derived from a set of chemical shifts using the NMR program TALOS, and 5 chi1 angle restraints. ; _pdbx_nmr_refine.entry_id 1VM3 _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal NMRPipe/nmrDraw 2.1 'data processing' 'Delaglio, F.' 1 PIPP 1.0 'noe picking' 'Garrett, D.' 2 XPLOR-NIH 1.06 refinement 'Schwieters, C.D., Kuszewski, J., Tjandra, N, Clore, G.M.' 3 MOLMOL 2K.1 'structural analysis and viewing' 'Koradi, R.' 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASP N N N N 1 ASP CA C N S 2 ASP C C N N 3 ASP O O N N 4 ASP CB C N N 5 ASP CG C N N 6 ASP OD1 O N N 7 ASP OD2 O N N 8 ASP OXT O N N 9 ASP H H N N 10 ASP H2 H N N 11 ASP HA H N N 12 ASP HB2 H N N 13 ASP HB3 H N N 14 ASP HD2 H N N 15 ASP HXT H N N 16 GLY N N N N 17 GLY CA C N N 18 GLY C C N N 19 GLY O O N N 20 GLY OXT O N N 21 GLY H H N N 22 GLY H2 H N N 23 GLY HA2 H N N 24 GLY HA3 H N N 25 GLY HXT H N N 26 ILE N N N N 27 ILE CA C N S 28 ILE C C N N 29 ILE O O N N 30 ILE CB C N S 31 ILE CG1 C N N 32 ILE CG2 C N N 33 ILE CD1 C N N 34 ILE OXT O N N 35 ILE H H N N 36 ILE H2 H N N 37 ILE HA H N N 38 ILE HB H N N 39 ILE HG12 H N N 40 ILE HG13 H N N 41 ILE HG21 H N N 42 ILE HG22 H N N 43 ILE HG23 H N N 44 ILE HD11 H N N 45 ILE HD12 H N N 46 ILE HD13 H N N 47 ILE HXT H N N 48 LEU N N N N 49 LEU CA C N S 50 LEU C C N N 51 LEU O O N N 52 LEU CB C N N 53 LEU CG C N N 54 LEU CD1 C N N 55 LEU CD2 C N N 56 LEU OXT O N N 57 LEU H H N N 58 LEU H2 H N N 59 LEU HA H N N 60 LEU HB2 H N N 61 LEU HB3 H N N 62 LEU HG H N N 63 LEU HD11 H N N 64 LEU HD12 H N N 65 LEU HD13 H N N 66 LEU HD21 H N N 67 LEU HD22 H N N 68 LEU HD23 H N N 69 LEU HXT H N N 70 LYS N N N N 71 LYS CA C N S 72 LYS C C N N 73 LYS O O N N 74 LYS CB C N N 75 LYS CG C N N 76 LYS CD C N N 77 LYS CE C N N 78 LYS NZ N N N 79 LYS OXT O N N 80 LYS H H N N 81 LYS H2 H N N 82 LYS HA H N N 83 LYS HB2 H N N 84 LYS HB3 H N N 85 LYS HG2 H N N 86 LYS HG3 H N N 87 LYS HD2 H N N 88 LYS HD3 H N N 89 LYS HE2 H N N 90 LYS HE3 H N N 91 LYS HZ1 H N N 92 LYS HZ2 H N N 93 LYS HZ3 H N N 94 LYS HXT H N N 95 NH2 N N N N 96 NH2 HN1 H N N 97 NH2 HN2 H N N 98 PHE N N N N 99 PHE CA C N S 100 PHE C C N N 101 PHE O O N N 102 PHE CB C N N 103 PHE CG C Y N 104 PHE CD1 C Y N 105 PHE CD2 C Y N 106 PHE CE1 C Y N 107 PHE CE2 C Y N 108 PHE CZ C Y N 109 PHE OXT O N N 110 PHE H H N N 111 PHE H2 H N N 112 PHE HA H N N 113 PHE HB2 H N N 114 PHE HB3 H N N 115 PHE HD1 H N N 116 PHE HD2 H N N 117 PHE HE1 H N N 118 PHE HE2 H N N 119 PHE HZ H N N 120 PHE HXT H N N 121 SER N N N N 122 SER CA C N S 123 SER C C N N 124 SER O O N N 125 SER CB C N N 126 SER OG O N N 127 SER OXT O N N 128 SER H H N N 129 SER H2 H N N 130 SER HA H N N 131 SER HB2 H N N 132 SER HB3 H N N 133 SER HG H N N 134 SER HXT H N N 135 VAL N N N N 136 VAL CA C N S 137 VAL C C N N 138 VAL O O N N 139 VAL CB C N N 140 VAL CG1 C N N 141 VAL CG2 C N N 142 VAL OXT O N N 143 VAL H H N N 144 VAL H2 H N N 145 VAL HA H N N 146 VAL HB H N N 147 VAL HG11 H N N 148 VAL HG12 H N N 149 VAL HG13 H N N 150 VAL HG21 H N N 151 VAL HG22 H N N 152 VAL HG23 H N N 153 VAL HXT H N N 154 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP N CA sing N N 1 ASP N H sing N N 2 ASP N H2 sing N N 3 ASP CA C sing N N 4 ASP CA CB sing N N 5 ASP CA HA sing N N 6 ASP C O doub N N 7 ASP C OXT sing N N 8 ASP CB CG sing N N 9 ASP CB HB2 sing N N 10 ASP CB HB3 sing N N 11 ASP CG OD1 doub N N 12 ASP CG OD2 sing N N 13 ASP OD2 HD2 sing N N 14 ASP OXT HXT sing N N 15 GLY N CA sing N N 16 GLY N H sing N N 17 GLY N H2 sing N N 18 GLY CA C sing N N 19 GLY CA HA2 sing N N 20 GLY CA HA3 sing N N 21 GLY C O doub N N 22 GLY C OXT sing N N 23 GLY OXT HXT sing N N 24 ILE N CA sing N N 25 ILE N H sing N N 26 ILE N H2 sing N N 27 ILE CA C sing N N 28 ILE CA CB sing N N 29 ILE CA HA sing N N 30 ILE C O doub N N 31 ILE C OXT sing N N 32 ILE CB CG1 sing N N 33 ILE CB CG2 sing N N 34 ILE CB HB sing N N 35 ILE CG1 CD1 sing N N 36 ILE CG1 HG12 sing N N 37 ILE CG1 HG13 sing N N 38 ILE CG2 HG21 sing N N 39 ILE CG2 HG22 sing N N 40 ILE CG2 HG23 sing N N 41 ILE CD1 HD11 sing N N 42 ILE CD1 HD12 sing N N 43 ILE CD1 HD13 sing N N 44 ILE OXT HXT sing N N 45 LEU N CA sing N N 46 LEU N H sing N N 47 LEU N H2 sing N N 48 LEU CA C sing N N 49 LEU CA CB sing N N 50 LEU CA HA sing N N 51 LEU C O doub N N 52 LEU C OXT sing N N 53 LEU CB CG sing N N 54 LEU CB HB2 sing N N 55 LEU CB HB3 sing N N 56 LEU CG CD1 sing N N 57 LEU CG CD2 sing N N 58 LEU CG HG sing N N 59 LEU CD1 HD11 sing N N 60 LEU CD1 HD12 sing N N 61 LEU CD1 HD13 sing N N 62 LEU CD2 HD21 sing N N 63 LEU CD2 HD22 sing N N 64 LEU CD2 HD23 sing N N 65 LEU OXT HXT sing N N 66 LYS N CA sing N N 67 LYS N H sing N N 68 LYS N H2 sing N N 69 LYS CA C sing N N 70 LYS CA CB sing N N 71 LYS CA HA sing N N 72 LYS C O doub N N 73 LYS C OXT sing N N 74 LYS CB CG sing N N 75 LYS CB HB2 sing N N 76 LYS CB HB3 sing N N 77 LYS CG CD sing N N 78 LYS CG HG2 sing N N 79 LYS CG HG3 sing N N 80 LYS CD CE sing N N 81 LYS CD HD2 sing N N 82 LYS CD HD3 sing N N 83 LYS CE NZ sing N N 84 LYS CE HE2 sing N N 85 LYS CE HE3 sing N N 86 LYS NZ HZ1 sing N N 87 LYS NZ HZ2 sing N N 88 LYS NZ HZ3 sing N N 89 LYS OXT HXT sing N N 90 NH2 N HN1 sing N N 91 NH2 N HN2 sing N N 92 PHE N CA sing N N 93 PHE N H sing N N 94 PHE N H2 sing N N 95 PHE CA C sing N N 96 PHE CA CB sing N N 97 PHE CA HA sing N N 98 PHE C O doub N N 99 PHE C OXT sing N N 100 PHE CB CG sing N N 101 PHE CB HB2 sing N N 102 PHE CB HB3 sing N N 103 PHE CG CD1 doub Y N 104 PHE CG CD2 sing Y N 105 PHE CD1 CE1 sing Y N 106 PHE CD1 HD1 sing N N 107 PHE CD2 CE2 doub Y N 108 PHE CD2 HD2 sing N N 109 PHE CE1 CZ doub Y N 110 PHE CE1 HE1 sing N N 111 PHE CE2 CZ sing Y N 112 PHE CE2 HE2 sing N N 113 PHE CZ HZ sing N N 114 PHE OXT HXT sing N N 115 SER N CA sing N N 116 SER N H sing N N 117 SER N H2 sing N N 118 SER CA C sing N N 119 SER CA CB sing N N 120 SER CA HA sing N N 121 SER C O doub N N 122 SER C OXT sing N N 123 SER CB OG sing N N 124 SER CB HB2 sing N N 125 SER CB HB3 sing N N 126 SER OG HG sing N N 127 SER OXT HXT sing N N 128 VAL N CA sing N N 129 VAL N H sing N N 130 VAL N H2 sing N N 131 VAL CA C sing N N 132 VAL CA CB sing N N 133 VAL CA HA sing N N 134 VAL C O doub N N 135 VAL C OXT sing N N 136 VAL CB CG1 sing N N 137 VAL CB CG2 sing N N 138 VAL CB HB sing N N 139 VAL CG1 HG11 sing N N 140 VAL CG1 HG12 sing N N 141 VAL CG1 HG13 sing N N 142 VAL CG2 HG21 sing N N 143 VAL CG2 HG22 sing N N 144 VAL CG2 HG23 sing N N 145 VAL OXT HXT sing N N 146 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 1VM3 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_