HEADER ELECTRON TRANSPORT 13-SEP-04 1VM9 TITLE THE X-RAY STRUCTURE OF THE CYS84ALA CYS85ALA DOUBLE MUTANT OF THE TITLE 2 [2FE-2S] FERREDOXIN SUBUNIT OF TOLUENE-4-MONOOXYGENASE FROM TITLE 3 PSEUDOMONAS MENDOCINA KR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS MENDOCINA; SOURCE 3 ORGANISM_TAXID: 300; SOURCE 4 STRAIN: KR1; SOURCE 5 GENE: TMOC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT4CD15BTET(C84AC85A) KEYWDS STRUCTURAL GENOMICS, CESG, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 2 FERREDOXIN, FES, [2FE-2S] CLUSTER, RIESKE PROTEIN, TOLUENE-4- KEYWDS 3 MONOOXYGENASE SUBUNIT, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, KEYWDS 4 ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR G.E.WESENBERG,D.W.SMITH,G.N.PHILLIPS JR.,C.A.BINGMAN,S.T.M.ALLARD, AUTHOR 2 L.A.MOE,B.G.FOX,CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 8 27-DEC-23 1VM9 1 REMARK REVDAT 7 20-OCT-21 1VM9 1 REMARK SEQADV LINK REVDAT 6 04-OCT-17 1VM9 1 REMARK REVDAT 5 24-FEB-09 1VM9 1 VERSN REVDAT 4 01-AUG-06 1VM9 1 JRNL REVDAT 3 21-FEB-06 1VM9 1 AUTHOR REVDAT 2 05-JUL-05 1VM9 1 REMARK REVDAT 1 21-SEP-04 1VM9 0 JRNL AUTH L.A.MOE,C.A.BINGMAN,G.E.WESENBERG,G.N.PHILLIPS,B.G.FOX JRNL TITL STRUCTURE OF T4MOC, THE RIESKE-TYPE FERREDOXIN COMPONENT OF JRNL TITL 2 TOLUENE 4-MONOOXYGENASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 476 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 16627939 JRNL DOI 10.1107/S0907444906006056 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.048 REMARK 3 FREE R VALUE TEST SET COUNT : 838 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 835 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28800 REMARK 3 B22 (A**2) : 0.69200 REMARK 3 B33 (A**2) : -0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.070 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 878 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 747 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1188 ; 2.427 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1759 ; 0.995 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 109 ; 6.121 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 131 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 974 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 157 ; 0.022 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 164 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 860 ; 0.255 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 420 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 496 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 89 ; 0.236 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.272 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 542 ; 1.683 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 224 ; 0.357 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 877 ; 2.884 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 742 ; 1.399 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 336 ; 4.240 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 523 ; 0.975 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 308 ; 6.608 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1017 ; 2.973 ; 8.000 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000002005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-04; 03-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : APS; ROTATING ANODE REMARK 200 BEAMLINE : 32-ID; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924; 1.5418 REMARK 200 MONOCHROMATOR : DIAMOND 111 MIRROR; OSMIC CMF12 REMARK 200 -38CU6 REMARK 200 OPTICS : RH MIRROR; MULTILAYER REMARK 200 REMARK 200 DETECTOR TYPE : CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM; RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16626 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 0.27700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.06, RESOLVE 2.06 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 0.100M MES-ACETATE, REMARK 280 0.16M MAGNESIUM CHLORIDE, 24 PERCENT W/V MEPEG 5000, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.77800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.77800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.25500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.25500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.77800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.25500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.20000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.77800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.25500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 26.20000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A MONOMER WITH NO HIGHER REMARK 300 OLIGOMERIC STATE APPARENT FROM SYMMETRY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 111 REMARK 465 SER A 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 930 O HOH A 1035 2.08 REMARK 500 O HOH A 920 O HOH A 1030 2.08 REMARK 500 OE1 GLU A 35 O HOH A 1035 2.10 REMARK 500 O HOH A 990 O HOH A 1033 2.11 REMARK 500 O HOH A 937 O HOH A 1024 2.15 REMARK 500 O HOH A 1002 O HOH A 1010 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 961 O HOH A 1035 5545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 97 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 7 -178.42 -171.15 REMARK 500 ILE A 79 -66.95 -102.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 900 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 45 SG REMARK 620 2 FES A 900 S1 110.9 REMARK 620 3 FES A 900 S2 110.3 105.8 REMARK 620 4 CYS A 64 SG 107.5 111.7 110.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 900 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 ND1 REMARK 620 2 FES A 900 S1 113.0 REMARK 620 3 FES A 900 S2 117.4 104.0 REMARK 620 4 HIS A 67 ND1 86.3 116.7 119.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 53 O REMARK 620 2 HOH A 903 O 81.5 REMARK 620 3 HOH A 904 O 165.2 86.8 REMARK 620 4 HOH A 905 O 93.6 87.2 94.8 REMARK 620 5 HOH A 906 O 104.2 171.3 88.6 85.9 REMARK 620 6 HOH A 907 O 85.3 94.1 86.6 178.2 93.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 96 OD2 REMARK 620 2 ASP A 97 OD1 91.0 REMARK 620 3 HOH A 908 O 95.3 88.5 REMARK 620 4 HOH A 909 O 78.4 91.9 173.7 REMARK 620 5 HOH A 910 O 171.6 91.6 92.8 93.5 REMARK 620 6 HOH A 911 O 85.8 176.7 91.3 87.9 91.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.34660 RELATED DB: TARGETDB DBREF 1VM9 A 2 112 UNP Q00458 TMOC_PSEME 1 111 SEQADV 1VM9 ALA A 84 UNP Q00458 CYS 83 ENGINEERED MUTATION SEQADV 1VM9 ALA A 85 UNP Q00458 CYS 84 ENGINEERED MUTATION SEQRES 1 A 111 SER PHE GLU LYS ILE CYS SER LEU ASP ASP ILE TRP VAL SEQRES 2 A 111 GLY GLU MET GLU THR PHE GLU THR SER ASP GLY THR GLU SEQRES 3 A 111 VAL LEU ILE VAL ASN SER GLU GLU HIS GLY VAL LYS ALA SEQRES 4 A 111 TYR GLN ALA MET CYS PRO HIS GLN GLU ILE LEU LEU SER SEQRES 5 A 111 GLU GLY SER TYR GLU GLY GLY VAL ILE THR CYS ARG ALA SEQRES 6 A 111 HIS LEU TRP THR PHE ASN ASP GLY THR GLY HIS GLY ILE SEQRES 7 A 111 ASN PRO ASP ASP ALA ALA LEU ALA GLU TYR PRO VAL GLU SEQRES 8 A 111 VAL LYS GLY ASP ASP ILE TYR VAL SER THR LYS GLY ILE SEQRES 9 A 111 LEU PRO ASN LYS ALA HIS SER HET MG A 901 1 HET MG A 902 1 HET FES A 900 4 HET EDO A 801 4 HET EDO A 802 4 HET EDO A 803 4 HETNAM MG MAGNESIUM ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG 2(MG 2+) FORMUL 4 FES FE2 S2 FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *133(H2 O) HELIX 1 1 ASP A 10 ILE A 12 5 3 HELIX 2 2 LEU A 51 GLY A 55 5 5 SHEET 1 A 3 GLU A 4 SER A 8 0 SHEET 2 A 3 ASP A 97 VAL A 100 -1 O ILE A 98 N ILE A 6 SHEET 3 A 3 VAL A 91 LYS A 94 -1 N GLU A 92 O TYR A 99 SHEET 1 B 4 GLU A 16 GLU A 21 0 SHEET 2 B 4 GLU A 27 SER A 33 -1 O ILE A 30 N GLU A 18 SHEET 3 B 4 GLY A 37 GLN A 42 -1 O LYS A 39 N VAL A 31 SHEET 4 B 4 GLU A 88 TYR A 89 -1 O TYR A 89 N ALA A 40 SHEET 1 C 3 SER A 56 GLU A 58 0 SHEET 2 C 3 VAL A 61 THR A 63 -1 O THR A 63 N SER A 56 SHEET 3 C 3 THR A 70 ASN A 72 -1 O PHE A 71 N ILE A 62 LINK SG CYS A 45 FE1 FES A 900 1555 1555 2.27 LINK ND1 HIS A 47 FE2 FES A 900 1555 1555 2.10 LINK O SER A 53 MG MG A 901 1555 1555 2.11 LINK SG CYS A 64 FE1 FES A 900 1555 1555 2.33 LINK ND1 HIS A 67 FE2 FES A 900 1555 1555 2.07 LINK OD2 ASP A 96 MG MG A 902 1555 1555 2.13 LINK OD1 ASP A 97 MG MG A 902 1555 1555 2.15 LINK MG MG A 901 O HOH A 903 1555 1555 2.41 LINK MG MG A 901 O HOH A 904 1555 1555 2.23 LINK MG MG A 901 O HOH A 905 1555 1555 2.18 LINK MG MG A 901 O HOH A 906 1555 1555 2.12 LINK MG MG A 901 O HOH A 907 1555 1555 2.11 LINK MG MG A 902 O HOH A 908 1555 1555 2.10 LINK MG MG A 902 O HOH A 909 1555 1555 2.02 LINK MG MG A 902 O HOH A 910 1555 1555 1.92 LINK MG MG A 902 O HOH A 911 1555 1555 2.15 CISPEP 1 ASN A 80 PRO A 81 0 -2.99 SITE 1 AC1 6 SER A 53 HOH A 903 HOH A 904 HOH A 905 SITE 2 AC1 6 HOH A 906 HOH A 907 SITE 1 AC2 6 ASP A 96 ASP A 97 HOH A 908 HOH A 909 SITE 2 AC2 6 HOH A 910 HOH A 911 SITE 1 AC3 6 CYS A 45 HIS A 47 GLN A 48 CYS A 64 SITE 2 AC3 6 HIS A 67 TRP A 69 SITE 1 AC4 4 SER A 56 THR A 63 ARG A 65 HOH A1006 SITE 1 AC5 3 TRP A 69 PRO A 81 ASP A 83 SITE 1 AC6 6 VAL A 14 ASN A 32 SER A 33 GLU A 34 SITE 2 AC6 6 GLY A 37 HOH A1016 CRYST1 44.510 52.400 83.556 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022467 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011968 0.00000