HEADER UNKNOWN FUNCTION 23-SEP-04 1VMF TITLE CRYSTAL STRUCTURE OF A YBJQ-LIKE FOLD PROTEIN OF UNKNOWN FUNCTION TITLE 2 (BH3498) FROM BACILLUS HALODURANS AT 1.46 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS; SOURCE 3 ORGANISM_TAXID: 86665; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 27-DEC-23 1VMF 1 REMARK SEQADV LINK REVDAT 7 20-DEC-17 1VMF 1 REMARK REVDAT 6 13-JUL-11 1VMF 1 VERSN REVDAT 5 28-JUL-10 1VMF 1 HEADER TITLE KEYWDS REVDAT 4 24-FEB-09 1VMF 1 VERSN REVDAT 3 28-MAR-06 1VMF 1 JRNL REVDAT 2 18-JAN-05 1VMF 1 AUTHOR KEYWDS REMARK REVDAT 1 05-OCT-04 1VMF 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN (10176122) FROM JRNL TITL 2 BACILLUS HALODURANS AT 1.46 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC (5.2.0005) REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 74793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3955 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4762 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 268 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3225 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 417 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.137 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3375 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3010 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4585 ; 1.368 ; 1.915 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6987 ; 0.826 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 404 ; 5.902 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;31.922 ;23.938 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;12.275 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;10.902 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 535 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3687 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 667 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 573 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3099 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1614 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1982 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 311 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.091 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.166 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 63 ; 0.280 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2033 ; 1.608 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 838 ; 0.435 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3332 ; 2.692 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1390 ; 3.950 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1253 ; 6.223 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 49.2630 17.1620 6.1090 REMARK 3 T TENSOR REMARK 3 T11: -0.0479 T22: -0.0235 REMARK 3 T33: 0.0127 T12: -0.0100 REMARK 3 T13: -0.0015 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.5315 L22: 0.6189 REMARK 3 L33: 0.9850 L12: -0.0917 REMARK 3 L13: 0.1709 L23: 0.0141 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: 0.0904 S13: 0.0211 REMARK 3 S21: -0.1219 S22: -0.0211 S23: -0.0059 REMARK 3 S31: -0.0967 S32: 0.0379 S33: 0.0413 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): 41.6700 8.6360 22.5560 REMARK 3 T TENSOR REMARK 3 T11: -0.0476 T22: -0.0223 REMARK 3 T33: 0.0298 T12: -0.0223 REMARK 3 T13: -0.0058 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.5410 L22: 0.6822 REMARK 3 L33: 1.2397 L12: -0.0620 REMARK 3 L13: 0.3037 L23: 0.2767 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.0825 S13: -0.0642 REMARK 3 S21: 0.1078 S22: -0.0145 S23: 0.0868 REMARK 3 S31: 0.1509 S32: -0.1569 S33: -0.0213 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -1 C 133 REMARK 3 ORIGIN FOR THE GROUP (A): 61.1300 12.7690 21.6580 REMARK 3 T TENSOR REMARK 3 T11: -0.0533 T22: -0.0152 REMARK 3 T33: 0.0335 T12: 0.0028 REMARK 3 T13: -0.0190 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.6213 L22: 0.7085 REMARK 3 L33: 1.1067 L12: 0.0640 REMARK 3 L13: 0.4468 L23: 0.2780 REMARK 3 S TENSOR REMARK 3 S11: 0.0392 S12: 0.0506 S13: -0.0321 REMARK 3 S21: 0.0614 S22: 0.0097 S23: -0.1361 REMARK 3 S31: 0.0516 S32: 0.2062 S33: -0.0489 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000002011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-04; 27-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; SSRL REMARK 200 BEAMLINE : 8.3.1; BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980075; REMARK 200 0.97957,0.979694,1.019859 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR; DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : FLAT MIRROR; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, SCALA 5.0), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78750 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 29.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: TWO CRYSTALS WERE USED FOR THE SOLUTION OF THIS STRUCTURE. REMARK 200 2 A MAD DATA COLLECTED FROM ONE CRYSTAL WAS USED TO PHASE THE REMARK 200 STRUCTURE. THE INITIAL MODEL WAS THEN EXTENDED AND REBUILT WITH REMARK 200 ARP/WARP USING THE AMPLITUDES FROM A SECOND CRYSTAL THAT REMARK 200 DIFFRACTED TO 1.46 A. REFINEMENT WAS AGAINST THE 1.46 A DATA. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8.0% ETHYLENE GLYCOL, 10.0% PEG 8000, REMARK 280 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, REMARK 280 TEMPERATURE 277K. 0.2M NACL, 30.0% PEG 400, 0.1M HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.80050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.48200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.47550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.48200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.80050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.47550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 ASP C -8 REMARK 465 LYS C -7 REMARK 465 ILE C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 9 OE1 NE2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 GLN B 9 CD OE1 NE2 REMARK 470 ARG B 26 CD NE CZ NH1 NH2 REMARK 470 ARG B 76 NE CZ NH1 NH2 REMARK 470 GLU B 79 CD OE1 OE2 REMARK 470 LYS B 125 NZ REMARK 470 ARG C 26 CD NE CZ NH1 NH2 REMARK 470 ARG C 58 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 118 42.16 -142.28 REMARK 500 ASN B 49 -165.92 -162.98 REMARK 500 ASP B 118 45.77 -143.46 REMARK 500 ASN C 49 -167.25 -161.80 REMARK 500 ASP C 118 38.86 -144.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 134 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 90 O REMARK 620 2 HOH A 137 O 86.0 REMARK 620 3 THR B 90 O 96.4 174.1 REMARK 620 4 HOH B 140 O 91.4 89.2 85.3 REMARK 620 5 THR C 90 O 96.5 87.8 97.3 171.4 REMARK 620 6 HOH C 138 O 173.7 87.9 89.5 87.0 84.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE C 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 136 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 356786 RELATED DB: TARGETDB DBREF 1VMF A 1 133 UNP Q9K772 Q9K772_BACHD 1 133 DBREF 1VMF B 1 133 UNP Q9K772 Q9K772_BACHD 1 133 DBREF 1VMF C 1 133 UNP Q9K772 Q9K772_BACHD 1 133 SEQADV 1VMF MET A -11 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF GLY A -10 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF SER A -9 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF ASP A -8 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF LYS A -7 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF ILE A -6 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS A -5 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS A -4 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS A -3 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS A -2 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS A -1 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS A 0 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF MET B -11 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF GLY B -10 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF SER B -9 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF ASP B -8 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF LYS B -7 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF ILE B -6 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS B -5 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS B -4 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS B -3 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS B -2 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS B -1 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS B 0 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF MET C -11 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF GLY C -10 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF SER C -9 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF ASP C -8 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF LYS C -7 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF ILE C -6 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS C -5 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS C -4 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS C -3 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS C -2 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS C -1 UNP Q9K772 EXPRESSION TAG SEQADV 1VMF HIS C 0 UNP Q9K772 EXPRESSION TAG SEQRES 1 A 145 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 145 LYS THR PHE HIS LEU THR THR GLN SER ARG ASP GLU MET SEQRES 3 A 145 VAL ASP ILE THR SER GLN ILE GLU THR TRP ILE ARG GLU SEQRES 4 A 145 THR GLY VAL THR ASN GLY VAL ALA ILE VAL SER SER LEU SEQRES 5 A 145 HIS THR THR ALA GLY ILE THR VAL ASN GLU ASN ALA ASP SEQRES 6 A 145 PRO ASP VAL LYS ARG ASP MET ILE MET ARG LEU ASP GLU SEQRES 7 A 145 VAL TYR PRO TRP HIS HIS GLU ASN ASP ARG HIS MET GLU SEQRES 8 A 145 GLY ASN THR ALA ALA HIS LEU LYS THR SER THR VAL GLY SEQRES 9 A 145 HIS ALA GLN THR LEU ILE ILE SER GLU GLY ARG LEU VAL SEQRES 10 A 145 LEU GLY THR TRP GLN GLY VAL TYR PHE CYS GLU PHE ASP SEQRES 11 A 145 GLY PRO ARG THR ASN ARG LYS PHE VAL VAL LYS LEU LEU SEQRES 12 A 145 THR ASP SEQRES 1 B 145 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 145 LYS THR PHE HIS LEU THR THR GLN SER ARG ASP GLU MET SEQRES 3 B 145 VAL ASP ILE THR SER GLN ILE GLU THR TRP ILE ARG GLU SEQRES 4 B 145 THR GLY VAL THR ASN GLY VAL ALA ILE VAL SER SER LEU SEQRES 5 B 145 HIS THR THR ALA GLY ILE THR VAL ASN GLU ASN ALA ASP SEQRES 6 B 145 PRO ASP VAL LYS ARG ASP MET ILE MET ARG LEU ASP GLU SEQRES 7 B 145 VAL TYR PRO TRP HIS HIS GLU ASN ASP ARG HIS MET GLU SEQRES 8 B 145 GLY ASN THR ALA ALA HIS LEU LYS THR SER THR VAL GLY SEQRES 9 B 145 HIS ALA GLN THR LEU ILE ILE SER GLU GLY ARG LEU VAL SEQRES 10 B 145 LEU GLY THR TRP GLN GLY VAL TYR PHE CYS GLU PHE ASP SEQRES 11 B 145 GLY PRO ARG THR ASN ARG LYS PHE VAL VAL LYS LEU LEU SEQRES 12 B 145 THR ASP SEQRES 1 C 145 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 C 145 LYS THR PHE HIS LEU THR THR GLN SER ARG ASP GLU MET SEQRES 3 C 145 VAL ASP ILE THR SER GLN ILE GLU THR TRP ILE ARG GLU SEQRES 4 C 145 THR GLY VAL THR ASN GLY VAL ALA ILE VAL SER SER LEU SEQRES 5 C 145 HIS THR THR ALA GLY ILE THR VAL ASN GLU ASN ALA ASP SEQRES 6 C 145 PRO ASP VAL LYS ARG ASP MET ILE MET ARG LEU ASP GLU SEQRES 7 C 145 VAL TYR PRO TRP HIS HIS GLU ASN ASP ARG HIS MET GLU SEQRES 8 C 145 GLY ASN THR ALA ALA HIS LEU LYS THR SER THR VAL GLY SEQRES 9 C 145 HIS ALA GLN THR LEU ILE ILE SER GLU GLY ARG LEU VAL SEQRES 10 C 145 LEU GLY THR TRP GLN GLY VAL TYR PHE CYS GLU PHE ASP SEQRES 11 C 145 GLY PRO ARG THR ASN ARG LYS PHE VAL VAL LYS LEU LEU SEQRES 12 C 145 THR ASP HET NA A 134 1 HET ACT A 135 4 HET ACT B 134 4 HET EDO B 135 4 HET EDO C 134 4 HET EPE C 135 15 HET EDO C 136 4 HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EDO ETHYLENE GLYCOL HETSYN EPE HEPES FORMUL 4 NA NA 1+ FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 EDO 3(C2 H6 O2) FORMUL 9 EPE C8 H18 N2 O4 S FORMUL 11 HOH *417(H2 O) HELIX 1 1 ILE A 17 GLY A 29 1 13 HELIX 2 2 ASP A 53 TYR A 68 1 16 HELIX 3 3 ASN A 81 GLY A 92 1 12 HELIX 4 4 ILE B 17 GLY B 29 1 13 HELIX 5 5 ASP B 53 TYR B 68 1 16 HELIX 6 6 ASN B 81 GLY B 92 1 12 HELIX 7 7 ILE C 17 GLY C 29 1 13 HELIX 8 8 ASP C 53 TYR C 68 1 16 HELIX 9 9 ASN C 81 GLY C 92 1 12 SHEET 1 A 5 MET A 1 LEU A 6 0 SHEET 2 A 5 ARG A 124 THR A 132 -1 O PHE A 126 N PHE A 4 SHEET 3 A 5 GLY A 33 SER A 39 -1 N ILE A 36 O LYS A 129 SHEET 4 A 5 ALA A 94 SER A 100 -1 O LEU A 97 N ALA A 35 SHEET 5 A 5 ARG A 103 LEU A 104 -1 O ARG A 103 N SER A 100 SHEET 1 B 3 GLU A 13 ASP A 16 0 SHEET 2 B 3 GLN A 110 GLU A 116 -1 O GLU A 116 N GLU A 13 SHEET 3 B 3 ALA A 44 GLU A 50 -1 N THR A 47 O TYR A 113 SHEET 1 C 5 MET B 1 LEU B 6 0 SHEET 2 C 5 ARG B 124 THR B 132 -1 O PHE B 126 N PHE B 4 SHEET 3 C 5 GLY B 33 SER B 39 -1 N ILE B 36 O LYS B 129 SHEET 4 C 5 ALA B 94 SER B 100 -1 O LEU B 97 N ALA B 35 SHEET 5 C 5 ARG B 103 LEU B 104 -1 O ARG B 103 N SER B 100 SHEET 1 D 3 GLU B 13 ASP B 16 0 SHEET 2 D 3 GLN B 110 GLU B 116 -1 O GLU B 116 N GLU B 13 SHEET 3 D 3 ALA B 44 GLU B 50 -1 N THR B 47 O TYR B 113 SHEET 1 E 5 MET C 1 LEU C 6 0 SHEET 2 E 5 ARG C 124 THR C 132 -1 O PHE C 126 N PHE C 4 SHEET 3 E 5 GLY C 33 SER C 39 -1 N ILE C 36 O LYS C 129 SHEET 4 E 5 ALA C 94 SER C 100 -1 O LEU C 97 N ALA C 35 SHEET 5 E 5 ARG C 103 LEU C 104 -1 O ARG C 103 N SER C 100 SHEET 1 F 3 GLU C 13 ASP C 16 0 SHEET 2 F 3 GLN C 110 GLU C 116 -1 O GLU C 116 N GLU C 13 SHEET 3 F 3 ALA C 44 GLU C 50 -1 N THR C 47 O TYR C 113 LINK O THR A 90 NA NA A 134 1555 1555 2.31 LINK NA NA A 134 O HOH A 137 1555 1555 2.39 LINK NA NA A 134 O THR B 90 1555 1555 2.29 LINK NA NA A 134 O HOH B 140 1555 1555 2.29 LINK NA NA A 134 O THR C 90 1555 1555 2.32 LINK NA NA A 134 O HOH C 138 1555 1555 2.40 CISPEP 1 GLY A 119 PRO A 120 0 -1.70 CISPEP 2 GLY B 119 PRO B 120 0 -2.82 CISPEP 3 GLY C 119 PRO C 120 0 -4.20 SITE 1 AC1 6 THR A 90 HOH A 137 THR B 90 HOH B 140 SITE 2 AC1 6 THR C 90 HOH C 138 SITE 1 AC2 6 HOH A 269 HIS B 41 THR B 42 THR B 43 SITE 2 AC2 6 ARG B 124 HOH B 138 SITE 1 AC3 6 HIS A 41 THR A 42 THR A 43 ARG A 124 SITE 2 AC3 6 HOH A 154 TRP C 109 SITE 1 AC4 6 THR B 108 TRP B 109 ILE C 61 MET C 62 SITE 2 AC4 6 HOH C 162 HOH C 169 SITE 1 AC5 13 ASN A 74 GLU B 50 TRP B 109 HOH B 254 SITE 2 AC5 13 HIS C 41 THR C 42 THR C 43 HIS C 77 SITE 3 AC5 13 GLU C 79 ARG C 124 HOH C 150 HOH C 229 SITE 4 AC5 13 HOH C 235 SITE 1 AC6 6 GLY B 107 THR B 108 LEU C 40 HIS C 41 SITE 2 AC6 6 HOH C 193 HOH C 231 SITE 1 AC7 5 GLU B 101 ARG B 103 HOH B 225 PRO C 120 SITE 2 AC7 5 ARG C 121 CRYST1 57.601 58.951 134.964 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017361 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007409 0.00000