HEADER ANTIVIRAL PROTEIN 25-MAR-99 1VMP TITLE STRUCTURE OF THE ANTI-HIV CHEMOKINE VMIP-II COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (ANTI-HIV CHEMOKINE MIP VII); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VMIP-II; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8; SOURCE 3 ORGANISM_TAXID: 37296; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: BL21; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET32A+; SOURCE 8 OTHER_DETAILS: SYNTHETIC GENE KEYWDS VMIP-II, CHEMOKINE, MONOMER, SARCOMA, HERPESVIRUS, HHV-8, KAPOSI'S, KEYWDS 2 ANTIVIRAL PROTEIN EXPDTA SOLUTION NMR AUTHOR A.C.LIWANG,Z.-X.WANG,Y.SUN,S.C.PEIPER,P.J.LIWANG REVDAT 6 20-NOV-24 1VMP 1 REMARK REVDAT 5 27-DEC-23 1VMP 1 REMARK REVDAT 4 02-MAR-22 1VMP 1 REMARK REVDAT 3 24-FEB-09 1VMP 1 VERSN REVDAT 2 01-APR-03 1VMP 1 JRNL REVDAT 1 24-NOV-99 1VMP 0 JRNL AUTH A.C.LIWANG,Z.X.WANG,Y.SUN,S.C.PEIPER,P.J.LIWANG JRNL TITL THE SOLUTION STRUCTURE OF THE ANTI-HIV CHEMOKINE VMIP-II. JRNL REF PROTEIN SCI. V. 8 2270 1999 JRNL REFN ISSN 0961-8368 JRNL PMID 10595530 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES WERE CALCULATED USING THE SIMULATED ANNEALING REMARK 3 PROTOCOL OF REMARK 3 NILGES ET AL. (1988) FEBS LETT. 229, 129-136 USING THE PROGRAM REMARK 3 XPLOR 3.1 ( REMARK 3 BRUNGER) MODIFIED TO INCORPORATE COUPLING CONSTANTS (GARRETT EL REMARK 3 AL. (1984) J. REMARK 3 MAGN. RESON. SER. B 104, 99-103) AND A CONFORMATIONAL DATA BASE REMARK 3 POTENTIAL ( REMARK 3 KUSZEWSKI ET AL. (1996) PROTEIN SCI 5, 1067- 1080 AND (1997) J. REMARK 3 MAGN. RESON. REMARK 3 125, 171-177). REMARK 4 REMARK 4 1VMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-99. REMARK 100 THE DEPOSITION ID IS D_1000000754. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.4 REMARK 210 IONIC STRENGTH : 0.01 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D NOESY; 4D NOESY; 3D TOCSY; REMARK 210 HNHA; HNHB; HACAHB; HBHACONH; REMARK 210 CBCACONH; CBCANH; HCCHCOSY; REMARK 210 HCCHTOCSY; CC(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR MODIFIED REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMIZED MEAN STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REMARK 210 MEAN STRUCTURE. THE STRUCTURE WAS DETERMINED USING TRIPLE- REMARK 210 RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED VMIP-II REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H THR A 34 O GLY A 42 1.54 REMARK 500 O PRO A 24 H LEU A 27 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 25 -57.41 -9.45 REMARK 500 CYS A 38 -151.94 -72.37 REMARK 500 LYS A 48 -9.17 -58.68 REMARK 500 ASP A 60 -70.70 -47.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 1VMP A 4 74 UNP Q98157 VMI2_HHV8 24 94 SEQRES 1 A 71 LEU GLY ALA SER TRP HIS ARG PRO ASP LYS CYS CYS LEU SEQRES 2 A 71 GLY TYR GLN LYS ARG PRO LEU PRO GLN VAL LEU LEU SER SEQRES 3 A 71 SER TRP TYR PRO THR SER GLN LEU CYS SER LYS PRO GLY SEQRES 4 A 71 VAL ILE PHE LEU THR LYS ARG GLY ARG GLN VAL CYS ALA SEQRES 5 A 71 ASP LYS SER LYS ASP TRP VAL LYS LYS LEU MET GLN GLN SEQRES 6 A 71 LEU PRO VAL THR ALA ARG HELIX 1 1 GLN A 25 LEU A 27 5 3 HELIX 2 2 ASP A 60 GLN A 68 1 9 SHEET 1 A 2 LEU A 28 THR A 34 0 SHEET 2 A 2 GLY A 42 THR A 47 -1 N LEU A 46 O SER A 29 SSBOND 1 CYS A 14 CYS A 38 1555 1555 2.02 SSBOND 2 CYS A 15 CYS A 54 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000