HEADER    ANTIVIRAL PROTEIN                       25-MAR-99   1VMP              
TITLE     STRUCTURE OF THE ANTI-HIV CHEMOKINE VMIP-II                           
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PROTEIN (ANTI-HIV CHEMOKINE MIP VII);                      
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: VMIP-II;                                                    
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8;                            
SOURCE   3 ORGANISM_TAXID: 37296;                                               
SOURCE   4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   5 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   6 EXPRESSION_SYSTEM_CELL_LINE: BL21;                                   
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: PET32A+;                                  
SOURCE   8 OTHER_DETAILS: SYNTHETIC GENE                                        
KEYWDS    VMIP-II, CHEMOKINE, MONOMER, SARCOMA, HERPESVIRUS, HHV-8, KAPOSI'S,   
KEYWDS   2 ANTIVIRAL PROTEIN                                                    
EXPDTA    SOLUTION NMR                                                          
AUTHOR    A.C.LIWANG,Z.-X.WANG,Y.SUN,S.C.PEIPER,P.J.LIWANG                      
REVDAT   6   20-NOV-24 1VMP    1       REMARK                                   
REVDAT   5   27-DEC-23 1VMP    1       REMARK                                   
REVDAT   4   02-MAR-22 1VMP    1       REMARK                                   
REVDAT   3   24-FEB-09 1VMP    1       VERSN                                    
REVDAT   2   01-APR-03 1VMP    1       JRNL                                     
REVDAT   1   24-NOV-99 1VMP    0                                                
JRNL        AUTH   A.C.LIWANG,Z.X.WANG,Y.SUN,S.C.PEIPER,P.J.LIWANG              
JRNL        TITL   THE SOLUTION STRUCTURE OF THE ANTI-HIV CHEMOKINE VMIP-II.    
JRNL        REF    PROTEIN SCI.                  V.   8  2270 1999              
JRNL        REFN                   ISSN 0961-8368                               
JRNL        PMID   10595530                                                     
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : X-PLOR 3.1                                           
REMARK   3   AUTHORS     : BRUNGER                                              
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS:                                           
REMARK   3  THE STRUCTURES WERE CALCULATED USING THE SIMULATED ANNEALING        
REMARK   3  PROTOCOL OF                                                         
REMARK   3  NILGES ET AL. (1988) FEBS LETT. 229, 129-136 USING THE PROGRAM      
REMARK   3  XPLOR 3.1 (                                                         
REMARK   3  BRUNGER) MODIFIED TO INCORPORATE COUPLING CONSTANTS (GARRETT EL     
REMARK   3  AL. (1984) J.                                                       
REMARK   3  MAGN. RESON. SER. B 104, 99-103) AND A CONFORMATIONAL DATA BASE     
REMARK   3  POTENTIAL (                                                         
REMARK   3  KUSZEWSKI ET AL. (1996) PROTEIN SCI 5, 1067- 1080 AND (1997) J.     
REMARK   3  MAGN. RESON.                                                        
REMARK   3  125, 171-177).                                                      
REMARK   4                                                                      
REMARK   4 1VMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-99.                  
REMARK 100 THE DEPOSITION ID IS D_1000000754.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 5.4                                
REMARK 210  IONIC STRENGTH                 : 0.01                               
REMARK 210  PRESSURE                       : 1 ATM                              
REMARK 210  SAMPLE CONTENTS                : NULL                               
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D NOESY; 4D NOESY; 3D TOCSY;      
REMARK 210                                   HNHA; HNHB; HACAHB; HBHACONH;      
REMARK 210                                   CBCACONH; CBCANH; HCCHCOSY;        
REMARK 210                                   HCCHTOCSY; CC(CO)NH                
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : UNITYPLUS                          
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : X-PLOR MODIFIED                    
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 30                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 1                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : MINIMIZED MEAN STRUCTURE           
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK:                                                              
REMARK 210  MEAN STRUCTURE. THE STRUCTURE WAS DETERMINED USING TRIPLE-          
REMARK 210  RESONANCE NMR                                                       
REMARK 210  SPECTROSCOPY ON 13C, 15N-LABELED VMIP-II                            
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   H    THR A    34     O    GLY A    42              1.54            
REMARK 500   O    PRO A    24     H    LEU A    27              1.57            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    GLN A  25      -57.41     -9.45                                   
REMARK 500    CYS A  38     -151.94    -72.37                                   
REMARK 500    LYS A  48       -9.17    -58.68                                   
REMARK 500    ASP A  60      -70.70    -47.81                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  1VMP A    4    74  UNP    Q98157   VMI2_HHV8       24     94             
SEQRES   1 A   71  LEU GLY ALA SER TRP HIS ARG PRO ASP LYS CYS CYS LEU          
SEQRES   2 A   71  GLY TYR GLN LYS ARG PRO LEU PRO GLN VAL LEU LEU SER          
SEQRES   3 A   71  SER TRP TYR PRO THR SER GLN LEU CYS SER LYS PRO GLY          
SEQRES   4 A   71  VAL ILE PHE LEU THR LYS ARG GLY ARG GLN VAL CYS ALA          
SEQRES   5 A   71  ASP LYS SER LYS ASP TRP VAL LYS LYS LEU MET GLN GLN          
SEQRES   6 A   71  LEU PRO VAL THR ALA ARG                                      
HELIX    1   1 GLN A   25  LEU A   27  5                                   3    
HELIX    2   2 ASP A   60  GLN A   68  1                                   9    
SHEET    1   A 2 LEU A  28  THR A  34  0                                        
SHEET    2   A 2 GLY A  42  THR A  47 -1  N  LEU A  46   O  SER A  29           
SSBOND   1 CYS A   14    CYS A   38                          1555   1555  2.02  
SSBOND   2 CYS A   15    CYS A   54                          1555   1555  2.02  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000